Rh3CG060500

Glucose and ribitol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005382
Physical Location & Seq
Reverse (-)
4162824 .. 4163989
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG060500.1

Sequence Viewer

Length: 798 bp
ATGGACTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAATCTCAGCCTGGAAAAGAACACGCCATGAACCCTAACCCTCAGTTCTCAAACCCAGATTACAAACCCTCTAACAAGCTTCAAGGAAAGGTGGCGATAGTGACCGGAGGAGACTCCGGTATAGGGCGGGCGGTAAGCCATTACTTTGCTCAGGAGGGTGCAACTGTGGCCTTCACTTATGTGAAGGGCCAGGAGGAAACGGATGCACGTGACACACTCGAAATGATCAAGAAGGTGGTGAAAGCGTACGGGCGCATTGATATTCTGGTTAACAATGCGGCTGAGCAGTACAAGACCAGCTCGGTGGAAGATATCGATGAGGCTCGTATTGAAAGGGTGTTTAGGACCAACATCTTTGCTTACTTTTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATCGGTTGTGGCCTACAAAGGAAATGAGAAGCTGCTTGATTATACAGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGGCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGATTCCGGCATGTTTTGATGAGGAGGAGACTGCAAAGTATGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTTCCTATGTCTTCCTTGCTTCCAATGCTTTCGCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTGGGGTTATAGTAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

265

Amino Acids

28.95

Weight (kDa)

6.97

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 43 - 73 7.6e-06 short chain dehydrogenase
SDR PF23441 51 - 262 2.9e-08 SDR-like rossmann domain
adh_short PF00106 80 - 207 7.9e-32 short chain dehydrogenase
adh_short_C2 PF13561 81 - 261 4.1e-44 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 166, 170, 317
AcoI YGGCCR 1 cut(s) 754
AcuI CTGAAG 1 cut(s) 684
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 287, 329
AfiI CCNNNNNNNGG 2 cut(s) 162, 776
AgsI TTSAA 3 cut(s) 122, 371, 427
AjnI CCWGG 4 cut(s) 49, 228, 595, 682
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 5 cut(s) 118, 339, 496, 559, 593
AluI AGCT 5 cut(s) 118, 339, 496, 559, 593
Alw26I GTCTC 2 cut(s) 144, 638
AoxI GGCC 4 cut(s) 207, 226, 474, 754
ApeKI GCWGC 3 cut(s) 444, 496, 676
AspLEI GCGC 2 cut(s) 294, 706
AspS9I GGNCC 4 cut(s) 226, 384, 599, 609
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 3 cut(s) 384, 599, 609
BbrPI CACGTG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 709
BbvI GCAGC 3 cut(s) 456, 483, 688
BccI CCATC 2 cut(s) 5, 774
BciT130I CCWGG 4 cut(s) 51, 230, 597, 684
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 578
BcoDI GTCTC 2 cut(s) 144, 638
BfaI CTAG 1 cut(s) 560
BisI GCNGC 4 cut(s) 318, 445, 497, 677
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 4 cut(s) 319, 446, 498, 678
Bme1390I CCNGG 5 cut(s) 51, 230, 578, 597, 684
Bme18I GGWCC 3 cut(s) 384, 599, 609
BmgT120I GGNCC 4 cut(s) 226, 384, 599, 609
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 5 cut(s) 51, 230, 578, 597, 684
BmsI GCATC 2 cut(s) 232, 582
BpiI GAAGAC 1 cut(s) 709
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 578
Bsa29I ATCGAT 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 2 cut(s) 143, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 776
Bse118I RCCGGY 1 cut(s) 752
BseBI CCWGG 4 cut(s) 51, 230, 597, 684
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 4 cut(s) 247, 573, 762, 766
BseLI CCNNNNNNNGG 2 cut(s) 162, 776
BseMII CTCAG 4 cut(s) 59, 95, 203, 312
BseRI GAGGAG 4 cut(s) 18, 162, 653, 656
BseXI GCAGC 3 cut(s) 456, 483, 688
BshFI GGCC 4 cut(s) 209, 228, 476, 756
BshVI ATCGAT 1 cut(s) 354
BsiSI CCGG 5 cut(s) 144, 156, 577, 623, 753
BsiWI CGTACG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 162, 776
BsmAI GTCTC 2 cut(s) 144, 638
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 4 cut(s) 209, 228, 476, 756
Bsp143I GATC 1 cut(s) 264
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 3 cut(s) 166, 170, 317
BspANI GGCC 4 cut(s) 209, 228, 476, 756
BspCNI CTCAG 4 cut(s) 58, 94, 202, 313
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 752
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 4 cut(s) 51, 230, 597, 684
Bst4CI ACNGT 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 168, 420
BstDEI CTNAG 4 cut(s) 45, 81, 189, 321
BstF5I GGATG 4 cut(s) 247, 573, 762, 766
BstHHI GCGC 2 cut(s) 294, 706
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 144, 638
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 5 cut(s) 206, 419, 530, 676, 731
BstNI CCWGG 4 cut(s) 51, 230, 597, 684
BstNSI RCATGY 2 cut(s) 422, 630
BstSCI CCNGG 5 cut(s) 49, 228, 576, 595, 682
BstV1I GCAGC 3 cut(s) 456, 483, 688
BstV2I GAAGAC 1 cut(s) 709
BstXI CCANNNNNNTGG 2 cut(s) 343, 773
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 4 cut(s) 209, 228, 476, 756
BsuTUI ATCGAT 1 cut(s) 354
BtsCI GGATG 4 cut(s) 247, 573, 762, 766
Cac8I GCNNGC 2 cut(s) 168, 420
CfoI GCGC 2 cut(s) 294, 706
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 4 cut(s) 226, 384, 599, 609
ClaI ATCGAT 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 2 cut(s) 286, 328
CviAII CATG 5 cut(s) 67, 409, 419, 433, 627
CviQI GTAC 2 cut(s) 286, 328
DdeI CTNAG 4 cut(s) 45, 81, 189, 321
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 516
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 3 cut(s) 384, 599, 609
Eco57I CTGAAG 1 cut(s) 684
Eco72I CACGTG 1 cut(s) 248
EcoRII CCWGG 4 cut(s) 49, 228, 595, 682
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 5 cut(s) 70, 412, 422, 436, 630
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FatI CATG 5 cut(s) 66, 408, 418, 432, 626
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 318, 445, 497, 677
FokI GGATG 4 cut(s) 254, 560, 749, 753
Fsp4HI GCNGC 4 cut(s) 318, 445, 497, 677
FspBI CTAG 1 cut(s) 560
GlaI GCGC 2 cut(s) 293, 705
GluI GCNGC 4 cut(s) 318, 445, 497, 677
HaeIII GGCC 4 cut(s) 209, 228, 476, 756
HapII CCGG 5 cut(s) 144, 156, 577, 623, 753
HhaI GCGC 2 cut(s) 294, 706
Hin1II CATG 5 cut(s) 70, 412, 422, 436, 630
Hin6I GCGC 2 cut(s) 292, 704
HinP1I GCGC 2 cut(s) 292, 704
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 4 cut(s) 5, 41, 152, 619
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 5 cut(s) 144, 156, 577, 623, 753
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 310, 565
Hpy188I TCNGA 2 cut(s) 10, 664
Hpy188III TCNNGA 4 cut(s) 191, 268, 538, 795
Hpy8I GTNNAC 2 cut(s) 310, 565
HpyAV CCTTC 5 cut(s) 217, 220, 265, 434, 717
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 200, 245, 459, 650, 676
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 419, 530, 676, 731
HpyF3I CTNAG 4 cut(s) 45, 81, 189, 321
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 5 cut(s) 70, 412, 422, 436, 630
HspAI GCGC 2 cut(s) 292, 704
Ksp22I TGATCA 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 3 cut(s) 456, 483, 688
LweI GCATC 2 cut(s) 232, 582
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 139, 248
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 359, 709
MluCI AATT 1 cut(s) 453
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 218, 771
MspI CCGG 5 cut(s) 144, 156, 577, 623, 753
MspR9I CCNGG 5 cut(s) 51, 230, 578, 597, 684
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 4 cut(s) 51, 230, 597, 684
MwoI GCNNNNNNNGC 5 cut(s) 206, 419, 530, 676, 731
NciI CCSGG 1 cut(s) 578
NdeII GATC 1 cut(s) 264
NlaIII CATG 5 cut(s) 70, 412, 422, 436, 630
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 2 cut(s) 139, 248
NspI RCATGY 2 cut(s) 422, 630
OliI CACNNNNGTG 1 cut(s) 218
PaeI GCATGC 1 cut(s) 422
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 41, 619
Pfl23II CGTACG 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 684
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 4 cut(s) 319, 446, 498, 678
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 248
Psp6I CCWGG 4 cut(s) 49, 228, 595, 682
PspCI CACGTG 1 cut(s) 248
PspGI CCWGG 4 cut(s) 49, 228, 595, 682
PspLI CGTACG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 4 cut(s) 226, 384, 599, 609
PsyI GACNNNGTC 1 cut(s) 684
RsaI GTAC 2 cut(s) 287, 329
RsaNI GTAC 2 cut(s) 286, 328
RseI CAYNNNNRTG 2 cut(s) 218, 771
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 318, 445, 497, 677
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 4 cut(s) 226, 384, 599, 609
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 5 cut(s) 51, 230, 578, 597, 684
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 2 cut(s) 232, 582
SinI GGWCC 3 cut(s) 384, 599, 609
SmiMI CAYNNNNRTG 2 cut(s) 218, 771
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SphI GCATGC 1 cut(s) 422
Sse9I AATT 1 cut(s) 453
SsiI CCGC 3 cut(s) 166, 170, 317
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 5 cut(s) 49, 228, 576, 595, 682
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 258, 354
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 2 cut(s) 41, 619
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 2 cut(s) 139, 248
TseI GCWGC 3 cut(s) 444, 496, 676
Tsp45I GTSAC 2 cut(s) 139, 248
TspDTI ATGAA 3 cut(s) 83, 397, 449
TspGWI ACGGA 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 684
VpaK11BI GGWCC 3 cut(s) 384, 599, 609
XceI RCATGY 2 cut(s) 422, 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.