Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

4130249 .. 4131763

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATCAAGAAGGTGAAAACTTCTGATGCCAAAGACCCTATTGCAATTGCAGCTGATCTCGGTTTCGATGAGAATTGCAGGAGGGTTGTGGAGGAGGTGGTGAAAGCGTACGGGCGCATTGATATTCTGGTTAACAATGCGGCTGAGCAGTACAAGACCAGCTCGGTGGAAGATATCGATGAGGCTCGTATTGAAAGGGTGTTTAGGACCAACATCTTTGCTTACTTTTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATCGGTTGTGGCCTACAAAGGAAATGAGAAGCTGCTTGATTATACAGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGGCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGATTCCGGCATGTTTTGATGAGGAGGAGACTGCAAAGTATGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTGGGGTTATAGTAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

206

Amino Acids

22.55

Weight (kDa)

6.32

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	3 - 148	9.8e-35	short chain dehydrogenase
adh_short_C2	PF13561	12 - 202	4.8e-48	Enoyl-(Acyl carrier protein) reductase
SDR	PF23441	16 - 159	1.9e-07	SDR-like rossmann domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	110, 152
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	194, 250
AjnI	CCWGG	2 cut(s)	418, 505
AluBI	AGCT	5 cut(s)	53, 162, 319, 382, 416
AluI	AGCT	5 cut(s)	53, 162, 319, 382, 416
Alw26I	GTCTC	1 cut(s)	461
AoxI	GGCC	2 cut(s)	297, 577
ApeKI	GCWGC	4 cut(s)	50, 267, 319, 499
AspLEI	GCGC	2 cut(s)	117, 529
AspS9I	GGNCC	3 cut(s)	207, 422, 432
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	25, 112
AvaII	GGWCC	3 cut(s)	207, 422, 432
BbsI	GAAGAC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	62, 279, 306, 511
BccI	CCATC	1 cut(s)	597
BciT130I	CCWGG	2 cut(s)	420, 507
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	5 cut(s)	51, 141, 268, 320, 500
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	5 cut(s)	52, 142, 269, 321, 501
Bme1390I	CCNGG	3 cut(s)	401, 420, 507
Bme18I	GGWCC	3 cut(s)	207, 422, 432
BmgT120I	GGNCC	3 cut(s)	207, 422, 432
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	3 cut(s)	401, 420, 507
BmsI	GCATC	2 cut(s)	16, 405
BpiI	GAAGAC	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse118I	RCCGGY	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	420, 507
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	3 cut(s)	396, 585, 589
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	107, 476, 479
BseXI	GCAGC	4 cut(s)	62, 279, 306, 511
BshFI	GGCC	2 cut(s)	299, 579
BshVI	ATCGAT	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	400, 446, 576
BsiWI	CGTACG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	299, 579
Bsp143I	GATC	2 cut(s)	3, 55
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	299, 579
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	3, 55
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	420, 507
Bst6I	CTCTTC	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	243, 531
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	396, 585, 589
BstHHI	GCGC	2 cut(s)	117, 529
BstKTI	GATC	2 cut(s)	6, 58
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	3, 55
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 242, 353, 499, 554
BstNI	CCWGG	2 cut(s)	420, 507
BstNSI	RCATGY	2 cut(s)	245, 453
BstSCI	CCNGG	3 cut(s)	399, 418, 505
BstV1I	GCAGC	4 cut(s)	62, 279, 306, 511
BstV2I	GAAGAC	1 cut(s)	532
BstXI	CCANNNNNNTGG	2 cut(s)	166, 596
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	299, 579
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	396, 585, 589
Cac8I	GCNNGC	2 cut(s)	243, 531
CfoI	GCGC	2 cut(s)	117, 529
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	207, 422, 432
ClaI	ATCGAT	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	109, 151
CviAII	CATG	4 cut(s)	232, 242, 256, 450
CviQI	GTAC	2 cut(s)	109, 151
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	5, 57
DpnII	GATC	2 cut(s)	3, 55
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	207, 422, 432
Eco57I	CTGAAG	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	418, 505
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	4 cut(s)	235, 245, 259, 453
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FatI	CATG	4 cut(s)	231, 241, 255, 449
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	51, 141, 268, 320, 500
FokI	GGATG	3 cut(s)	383, 572, 576
Fsp4HI	GCNGC	5 cut(s)	51, 141, 268, 320, 500
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	2 cut(s)	116, 528
GluI	GCNGC	5 cut(s)	51, 141, 268, 320, 500
HaeIII	GGCC	2 cut(s)	299, 579
HapII	CCGG	3 cut(s)	400, 446, 576
HhaI	GCGC	2 cut(s)	117, 529
Hin1II	CATG	4 cut(s)	235, 245, 259, 453
Hin6I	GCGC	2 cut(s)	115, 527
HinP1I	GCGC	2 cut(s)	115, 527
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	442
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	400, 446, 576
HphI	GGTGA	2 cut(s)	25, 112
Hpy166II	GTNNAC	2 cut(s)	133, 388
Hpy188I	TCNGA	2 cut(s)	25, 487
Hpy188III	TCNNGA	3 cut(s)	7, 361, 618
Hpy8I	GTNNAC	2 cut(s)	133, 388
HpyAV	CCTTC	2 cut(s)	4, 257
HpyCH4V	TGCA	6 cut(s)	44, 50, 78, 282, 473, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 242, 353, 499, 554
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	235, 245, 259, 453
HspAI	GCGC	2 cut(s)	115, 527
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	3, 55
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	4 cut(s)	62, 279, 306, 511
LweI	GCATC	2 cut(s)	16, 405
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	1 cut(s)	383
MalI	GATC	2 cut(s)	5, 57
MboI	GATC	2 cut(s)	3, 55
MboII	GAAGA	3 cut(s)	182, 532, 555
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 73, 276
MnlI	CCTC	8 cut(s)	75, 85, 88, 175, 359, 454, 457, 514
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	3 cut(s)	400, 446, 576
MspR9I	CCNGG	3 cut(s)	401, 420, 507
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	420, 507
MwoI	GCNNNNNNNGC	5 cut(s)	50, 242, 353, 499, 554
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	3, 55
NlaIII	CATG	4 cut(s)	235, 245, 259, 453
NlaIV	GGNNCC	1 cut(s)	434
NspI	RCATGY	2 cut(s)	245, 453
PaeI	GCATGC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	442
Pfl23II	CGTACG	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	507
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	5 cut(s)	52, 142, 269, 321, 501
Psp6I	CCWGG	2 cut(s)	418, 505
PspGI	CCWGG	2 cut(s)	418, 505
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	3 cut(s)	207, 422, 432
PsyI	GACNNNGTC	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	110, 152
RsaNI	GTAC	2 cut(s)	109, 151
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	51, 141, 268, 320, 500
Sau3AI	GATC	2 cut(s)	3, 55
Sau96I	GGNCC	3 cut(s)	207, 422, 432
ScrFI	CCNGG	3 cut(s)	401, 420, 507
SetI	ASST	9 cut(s)	15, 55, 99, 164, 321, 384, 418, 508, 525
SexAI	ACCWGGT	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	16, 405
SinI	GGWCC	3 cut(s)	207, 422, 432
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	45, 73, 276
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	3 cut(s)	399, 418, 505
StyI	CCWWGG	1 cut(s)	339
TaqI	TCGA	2 cut(s)	66, 177
TasI	AATT	3 cut(s)	45, 73, 276
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	4 cut(s)	50, 267, 319, 499
TspDTI	ATGAA	2 cut(s)	220, 272
Tth111I	GACNNNGTC	1 cut(s)	507
VpaK11BI	GGWCC	3 cut(s)	207, 422, 432
XceI	RCATGY	2 cut(s)	245, 453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.