Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

1497483 .. 1499096

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAAGTGGGTTTCCGCCGCAGAAGCAAGAGACACAACCAGGGATACAACATGTCATGGAACCAACTCCCGAGTTCTCTAGTTCTAACTATAAACCTTCCAACAAACTTCATGGAAAAGTGGCACTCGTGACAGGAGGAGACTCAGGGATAGGTAAAGCAGTGTGTCACTGCTATGCACTTGAAGGAGCGAGCGTGGCTTTCACGTACGTTAAAGGTAGAGAGGACAAAGACGCAGAAGAAACGCTGCGTTTGCTTCACGAGGTTAAGACAAGGGAAGCTAAAGAGCCGATCATGATCGCTACTGATTTAGGGTTTGAAGAGAATTGCAAGAGGGTCGTTGAGGAAGTTGTGAACTCCTTTGGACGCATCGATGTGCTTGTGAATTGTGCAGCTGAGCAGCATGAGGTTTCCATTGAGGATATCGATGAGGCTAGGCTTGAGAGAGTGTTCCGTACCAACATCTTCTCGCAGTTTTTCTTGGTTAAATATGCGTTAAAGCACATGAAGGAAGGGAGCAGCATCATCAATACGACGTCGGTTGTTGCATACGCAGGAAACTCAAGCTTACTAGAGTACACAGCTACGAAAGGAGCCATCGTTTCTTTCACACGTGGGTTAGCTCTTCAGCTTGCACCAAAGGGCATTCGTGTGAACGGTGTCGCTCCTGGTCCGGTCTGGACTCCACTGATACCCGCATCGTTCTCTGAAGAAGCGATCAAACAGTTTGGGTCAGAGACACCGATGAAAAGAGCGGCTCAGCCTGTGGAAGTGGCTCCTTCCTACGTTTTCTTGGCTTGTAACCATTGCTCATCTTACTACACCGGCCAAATCCTCCATCCAAACGGTGGTCTTATCGTGAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004033 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008106 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0016614 GO:0016616 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

289

Amino Acids

31.45

Weight (kDa)

6.09

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	34 - 239	6.8e-10	SDR-like rossmann domain
adh_short	PF00106	40 - 234	8.1e-46	short chain dehydrogenase
KR	PF08659	42 - 203	1.1e-08	KR domain
adh_short_C2	PF13561	48 - 285	1.2e-52	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	755
AciI	CCGC	4 cut(s)	17, 20, 696, 755
AcoI	YGGCCR	1 cut(s)	826
AcuI	CTGAAG	2 cut(s)	611, 729
AcvI	CACGTG	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	3 cut(s)	209, 457, 578
AfiI	CCNNNNNNNGG	1 cut(s)	848
AflIII	ACRYGT	2 cut(s)	52, 611
AgsI	TTSAA	2 cut(s)	185, 320
AjnI	CCWGG	2 cut(s)	40, 667
AluBI	AGCT	6 cut(s)	281, 395, 567, 584, 623, 631
AluI	AGCT	6 cut(s)	281, 395, 567, 584, 623, 631
Alw26I	GTCTC	3 cut(s)	26, 135, 731
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	4 cut(s)	247, 392, 400, 519
AspS9I	GGNCC	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	671
BauI	CACGAG	2 cut(s)	128, 260
BbrPI	CACGTG	1 cut(s)	614
BbvI	GCAGC	4 cut(s)	234, 404, 412, 531
BccI	CCATC	2 cut(s)	605, 846
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	2 cut(s)	42, 669
BciVI	GTATCC	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	26, 135, 731
BfaI	CTAG	3 cut(s)	81, 435, 572
BfuI	GTATCC	1 cut(s)	39
BisI	GCNGC	6 cut(s)	20, 248, 393, 401, 520, 756
BlpI	GCTNAGC	2 cut(s)	396, 759
BlsI	GCNGC	6 cut(s)	21, 249, 394, 402, 521, 757
Bme1390I	CCNGG	2 cut(s)	42, 669
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	3 cut(s)	63, 595, 777
BmrFI	CCNGG	2 cut(s)	42, 669
BmsI	GCATC	3 cut(s)	378, 531, 707
Bpu1102I	GCTNAGC	2 cut(s)	396, 759
BpuEI	CTTGAG	2 cut(s)	461, 547
Bsa29I	ATCGAT	2 cut(s)	372, 426
BsaAI	YACGTR	2 cut(s)	207, 614
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	848
Bse118I	RCCGGY	1 cut(s)	824
Bse3DI	GCAATG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	42, 669
BseCI	ATCGAT	2 cut(s)	372, 426
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	838
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	848
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	3 cut(s)	159, 387, 773
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	234, 404, 412, 531
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	828
BshVI	ATCGAT	2 cut(s)	372, 426
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	674, 825
BsiWI	CGTACG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	848
BsmAI	GTCTC	3 cut(s)	26, 135, 731
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	828
BsoBI	CYCGRG	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	291, 297, 717
Bsp1720I	GCTNAGC	2 cut(s)	396, 759
BspACI	CCGC	4 cut(s)	17, 20, 696, 755
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	3 cut(s)	158, 388, 772
BspDI	ATCGAT	2 cut(s)	372, 426
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	63, 595, 777
BspQI	GCTCTTC	1 cut(s)	630
BsrBI	CCGCTC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	291, 297, 717
BssNI	GRCGYC	1 cut(s)	536
BssSI	CACGAG	2 cut(s)	128, 260
Bst2BI	CACGAG	2 cut(s)	128, 260
Bst2UI	CCWGG	2 cut(s)	42, 669
Bst4CI	ACNGT	3 cut(s)	659, 726, 848
Bst6I	CTCTTC	2 cut(s)	315, 630
BstACI	GRCGYC	1 cut(s)	536
BstBAI	YACGTR	2 cut(s)	207, 614
BstC8I	GCNNGC	2 cut(s)	193, 633
BstDEI	CTNAG	3 cut(s)	145, 396, 759
BstF5I	GGATG	1 cut(s)	838
BstKTI	GATC	3 cut(s)	294, 300, 720
BstMAI	GTCTC	3 cut(s)	26, 135, 731
BstMBI	GATC	3 cut(s)	291, 297, 717
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 197, 253
BstNI	CCWGG	2 cut(s)	42, 669
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	40, 667
BstV1I	GCAGC	4 cut(s)	234, 404, 412, 531
Bsu15I	ATCGAT	2 cut(s)	372, 426
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	828
BsuTUI	ATCGAT	2 cut(s)	372, 426
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	2 cut(s)	168, 169
BtsIMutI	CAGTG	3 cut(s)	168, 169, 686
Cac8I	GCNNGC	2 cut(s)	193, 633
CciI	TCATGA	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	671
ClaI	ATCGAT	2 cut(s)	372, 426
CseI	GACGC	2 cut(s)	242, 375
Csp6I	GTAC	3 cut(s)	208, 456, 577
CviAII	CATG	6 cut(s)	53, 58, 113, 295, 404, 505
CviQI	GTAC	3 cut(s)	208, 456, 577
DdeI	CTNAG	3 cut(s)	145, 396, 759
DpnI	GATC	3 cut(s)	293, 299, 719
DpnII	GATC	3 cut(s)	291, 297, 717
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	315, 630
EarI	CTCTTC	2 cut(s)	315, 630
EciI	GGCGGA	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	611, 729
Eco72I	CACGTG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	40, 667
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	6 cut(s)	56, 61, 116, 298, 407, 508
FatI	CATG	6 cut(s)	52, 57, 112, 294, 403, 504
FauI	CCCGC	1 cut(s)	703
Fnu4HI	GCNGC	6 cut(s)	20, 248, 393, 401, 520, 756
FokI	GGATG	1 cut(s)	825
Fsp4HI	GCNGC	6 cut(s)	20, 248, 393, 401, 520, 756
FspBI	CTAG	3 cut(s)	81, 435, 572
GluI	GCNGC	6 cut(s)	20, 248, 393, 401, 520, 756
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	2 cut(s)	674, 825
HgaI	GACGC	2 cut(s)	242, 375
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	6 cut(s)	56, 61, 116, 298, 407, 508
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	2 cut(s)	143, 682
HpaII	CCGG	2 cut(s)	674, 825
Hpy166II	GTNNAC	4 cut(s)	355, 579, 655, 862
Hpy188I	TCNGA	2 cut(s)	709, 736
Hpy188III	TCNNGA	6 cut(s)	71, 130, 260, 295, 679, 859
Hpy8I	GTNNAC	4 cut(s)	355, 579, 655, 862
Hpy99I	CGWCG	2 cut(s)	538, 541
HpyAV	CCTTC	5 cut(s)	108, 179, 502, 506, 789
HpyCH4III	ACNGT	3 cut(s)	659, 726, 848
HpyCH4IV	ACGT	5 cut(s)	206, 210, 536, 613, 786
HpyCH4V	TGCA	5 cut(s)	179, 330, 392, 548, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 197, 253
HpyF3I	CTNAG	3 cut(s)	145, 396, 759
HpySE526I	ACGT	5 cut(s)	206, 210, 536, 613, 786
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	6 cut(s)	56, 61, 116, 298, 407, 508
Kzo9I	GATC	3 cut(s)	291, 297, 717
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	5 cut(s)	188, 516, 593, 670, 781
Lsp1109I	GCAGC	4 cut(s)	234, 404, 412, 531
LweI	GCATC	3 cut(s)	378, 531, 707
MaeI	CTAG	3 cut(s)	81, 435, 572
MaeII	ACGT	5 cut(s)	206, 210, 536, 613, 786
MaeIII	GTNAC	3 cut(s)	130, 167, 800
MalI	GATC	3 cut(s)	293, 299, 719
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	3 cut(s)	291, 297, 717
MboII	GAAGA	5 cut(s)	251, 332, 457, 617, 722
MluCI	AATT	2 cut(s)	325, 385
MlyI	GAGTC	2 cut(s)	137, 676
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	131, 217, 256, 327, 337, 400, 412, 424, 845
MseI	TTAA	4 cut(s)	213, 267, 486, 497
MslI	CAYNNNNRTG	3 cut(s)	174, 374, 650
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	674, 825
MspR9I	CCNGG	2 cut(s)	42, 669
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	42, 669
MwoI	GCNNNNNNNGC	3 cut(s)	25, 197, 253
NdeII	GATC	3 cut(s)	291, 297, 717
NlaIII	CATG	6 cut(s)	56, 61, 116, 298, 407, 508
NlaIV	GGNNCC	3 cut(s)	63, 595, 777
NmuCI	GTSAC	2 cut(s)	130, 167
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	294
PciI	ACATGT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	645
Pfl23II	CGTACG	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	6 cut(s)	21, 249, 394, 402, 521, 757
PleI	GAGTC	2 cut(s)	137, 676
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
PpsI	GAGTC	2 cut(s)	137, 676
Ppu21I	YACGTR	2 cut(s)	207, 614
PscI	ACATGT	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	40, 667
PspCI	CACGTG	1 cut(s)	614
PspGI	CCWGG	2 cut(s)	40, 667
PspLI	CGTACG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	63, 595, 777
PspPI	GGNCC	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	209, 457, 578
RsaNI	GTAC	3 cut(s)	208, 456, 577
RseI	CAYNNNNRTG	3 cut(s)	174, 374, 650
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	213, 267, 486, 497
SatI	GCNGC	6 cut(s)	20, 248, 393, 401, 520, 756
Sau3AI	GATC	3 cut(s)	291, 297, 717
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	2 cut(s)	137, 676
ScrFI	CCNGG	2 cut(s)	42, 669
SfaNI	GCATC	3 cut(s)	378, 531, 707
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	3 cut(s)	174, 374, 650
SmlI	CTYRAG	2 cut(s)	440, 562
SmoI	CTYRAG	2 cut(s)	440, 562
Sse9I	AATT	2 cut(s)	325, 385
SsiI	CCGC	4 cut(s)	17, 20, 696, 755
SspMI	CTAG	3 cut(s)	81, 435, 572
StyD4I	CCNGG	2 cut(s)	40, 667
TaaI	ACNGT	3 cut(s)	659, 726, 848
TaiI	ACGT	5 cut(s)	209, 213, 539, 616, 789
TaqI	TCGA	2 cut(s)	372, 426
TasI	AATT	2 cut(s)	325, 385
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	22, 758
Tru1I	TTAA	4 cut(s)	213, 267, 486, 497
Tru9I	TTAA	4 cut(s)	213, 267, 486, 497
TscAI	CASTG	3 cut(s)	168, 176, 693
TseFI	GTSAC	2 cut(s)	130, 167
TseI	GCWGC	4 cut(s)	247, 392, 400, 519
Tsp45I	GTSAC	2 cut(s)	130, 167
TspDTI	ATGAA	3 cut(s)	101, 521, 761
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	168, 176, 693
Van91I	CCANNNNNTGG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	671
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XspI	CTAG	3 cut(s)	81, 435, 572
ZraI	GACGTC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.