Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Forward (+)

45760250 .. 45761451

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAATCTCAGCCTGGAAAAGAACACGCCATGAACCCTAACCCTCAGTTCTCAAACCCAGATTACAAACCCTCTCACAAGCTTCAAGGAAAGGTGGCGATAGTGACCGGAGGAGACTCCGGTATAGGGCGGGCGGTAAGCCATTACTTTGCTCAGGAGGGTGCAACTGTGGCCTTCACTTATGTGAAGGGCCAGGAGGCAACGGATGCACATGACACACTCGAAATGATCAAGAAGGTGAAAACTTCTGATGCAAAAGACCCTATTGCAATTGCAGCTGATCTCGGTTTCGATGAGAATTGCAGGAGGGTTGTGGAGGAGGTGGTGAAAGCGTACGGGCGCATTGATATTCTGGTTAATAATGCGGCTGAGCAGTACAAGACCAGCTCGGTGGAACATATCGATGAGGCTCGTATTGAAAGGGTGTTTAGGACCAACATCTTTGCTTACTTTTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATCGGTTGTGGCCTACAAAGGAAATGAGAAGCTGCTTGATTATACTGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGGCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGATTCCGGCATCTTTTGATGAGGAGGAGACTGCAAAGTATGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTAATGTTCTGGAGTCTCCTGGCCGGTGGTCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

299

Amino Acids

32.65

Weight (kDa)

6.46

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	39 - 245	3e-09	SDR-like rossmann domain
adh_short	PF00106	43 - 239	3.3e-45	short chain dehydrogenase
KR	PF08659	46 - 209	3.3e-09	KR domain
adh_short_C2	PF13561	51 - 286	5e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	166, 170, 401
AcoI	YGGCCR	2 cut(s)	838, 880
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	2 cut(s)	371, 413
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	122, 455, 511
AjnI	CCWGG	5 cut(s)	49, 228, 679, 766, 877
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	118, 314, 423, 580, 643, 677
AluI	AGCT	6 cut(s)	118, 314, 423, 580, 643, 677
Alw26I	GTCTC	3 cut(s)	144, 722, 879
AoxI	GGCC	5 cut(s)	207, 226, 558, 838, 880
ApeKI	GCWGC	4 cut(s)	311, 528, 580, 760
AspLEI	GCGC	2 cut(s)	378, 790
AspS9I	GGNCC	4 cut(s)	226, 468, 683, 693
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	286, 373
AvaII	GGWCC	3 cut(s)	468, 683, 693
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	4 cut(s)	323, 540, 567, 772
BccI	CCATC	2 cut(s)	5, 858
BciT130I	CCWGG	5 cut(s)	51, 230, 681, 768, 879
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	3 cut(s)	144, 722, 879
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	893
BisI	GCNGC	5 cut(s)	312, 402, 529, 581, 761
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	5 cut(s)	313, 403, 530, 582, 762
Bme1390I	CCNGG	6 cut(s)	51, 230, 662, 681, 768, 879
Bme18I	GGWCC	3 cut(s)	468, 683, 693
BmgT120I	GGNCC	4 cut(s)	226, 468, 683, 693
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	6 cut(s)	51, 230, 662, 681, 768, 879
BmsI	GCATC	4 cut(s)	232, 277, 666, 719
BpiI	GAAGAC	1 cut(s)	793
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	2 cut(s)	143, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	836, 882
BseBI	CCWGG	5 cut(s)	51, 230, 681, 768, 879
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	4 cut(s)	247, 657, 846, 850
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	4 cut(s)	59, 95, 203, 396
BseRI	GAGGAG	5 cut(s)	18, 162, 368, 737, 740
BseXI	GCAGC	4 cut(s)	323, 540, 567, 772
BshFI	GGCC	5 cut(s)	209, 228, 560, 840, 882
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	6 cut(s)	144, 156, 661, 707, 837, 883
BsiWI	CGTACG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	3 cut(s)	144, 722, 879
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	5 cut(s)	209, 228, 560, 840, 882
Bsp143I	GATC	2 cut(s)	264, 316
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	166, 170, 401
BspANI	GGCC	5 cut(s)	209, 228, 560, 840, 882
BspCNI	CTCAG	4 cut(s)	58, 94, 202, 397
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	695
BsrFI	RCCGGY	2 cut(s)	836, 882
BssAI	RCCGGY	2 cut(s)	836, 882
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	264, 316
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	5 cut(s)	51, 230, 681, 768, 879
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	829
BstAPI	GCANNNNNTGC	2 cut(s)	242, 503
BstC8I	GCNNGC	3 cut(s)	168, 504, 792
BstDEI	CTNAG	4 cut(s)	45, 81, 189, 405
BstF5I	GGATG	4 cut(s)	247, 657, 846, 850
BstHHI	GCGC	2 cut(s)	378, 790
BstKTI	GATC	2 cut(s)	267, 319
BstMAI	GTCTC	3 cut(s)	144, 722, 879
BstMBI	GATC	2 cut(s)	264, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	206, 242, 311, 503, 614, 760, 815
BstNI	CCWGG	5 cut(s)	51, 230, 681, 768, 879
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	6 cut(s)	49, 228, 660, 679, 766, 877
BstSFI	CTRYAG	1 cut(s)	893
BstV1I	GCAGC	4 cut(s)	323, 540, 567, 772
BstV2I	GAAGAC	1 cut(s)	793
BstXI	CCANNNNNNTGG	2 cut(s)	427, 857
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	209, 228, 560, 840, 882
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	247, 657, 846, 850
Cac8I	GCNNGC	3 cut(s)	168, 504, 792
CfoI	GCGC	2 cut(s)	378, 790
Cfr10I	RCCGGY	2 cut(s)	836, 882
Cfr13I	GGNCC	4 cut(s)	226, 468, 683, 693
ClaI	ATCGAT	1 cut(s)	438
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	2 cut(s)	370, 412
CviAII	CATG	5 cut(s)	67, 248, 493, 503, 517
CviQI	GTAC	2 cut(s)	370, 412
DdeI	CTNAG	4 cut(s)	45, 81, 189, 405
DpnI	GATC	2 cut(s)	266, 318
DpnII	GATC	2 cut(s)	264, 316
EaeI	YGGCCR	2 cut(s)	838, 880
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	468, 683, 693
Eco57I	CTGAAG	1 cut(s)	768
EcoRII	CCWGG	5 cut(s)	49, 228, 679, 766, 877
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	5 cut(s)	70, 251, 496, 506, 520
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FatI	CATG	5 cut(s)	66, 247, 492, 502, 516
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	312, 402, 529, 581, 761
FokI	GGATG	4 cut(s)	254, 644, 833, 837
Fsp4HI	GCNGC	5 cut(s)	312, 402, 529, 581, 761
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	2 cut(s)	377, 789
GluI	GCNGC	5 cut(s)	312, 402, 529, 581, 761
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	5 cut(s)	209, 228, 560, 840, 882
HapII	CCGG	6 cut(s)	144, 156, 661, 707, 837, 883
HhaI	GCGC	2 cut(s)	378, 790
Hin1II	CATG	5 cut(s)	70, 251, 496, 506, 520
Hin6I	GCGC	2 cut(s)	376, 788
HinP1I	GCGC	2 cut(s)	376, 788
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	5, 41, 152, 703, 872
HpaII	CCGG	6 cut(s)	144, 156, 661, 707, 837, 883
HphI	GGTGA	2 cut(s)	286, 373
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	3 cut(s)	10, 286, 748
Hpy188III	TCNNGA	4 cut(s)	191, 268, 622, 869
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	4 cut(s)	217, 220, 265, 518
HpyCH4III	ACNGT	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	7 cut(s)	206, 242, 311, 503, 614, 760, 815
HpyF3I	CTNAG	4 cut(s)	45, 81, 189, 405
Hsp92II	CATG	5 cut(s)	70, 251, 496, 506, 520
HspAI	GCGC	2 cut(s)	376, 788
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 316
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	4 cut(s)	323, 540, 567, 772
LweI	GCATC	4 cut(s)	232, 277, 666, 719
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	1 cut(s)	644
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	266, 318
MboI	GATC	2 cut(s)	264, 316
MboII	GAAGA	2 cut(s)	793, 816
MfeI	CAATTG	1 cut(s)	306
MluCI	AATT	3 cut(s)	306, 334, 537
MlyI	GAGTC	2 cut(s)	146, 881
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	3 cut(s)	218, 438, 855
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	6 cut(s)	144, 156, 661, 707, 837, 883
MspR9I	CCNGG	6 cut(s)	51, 230, 662, 681, 768, 879
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	5 cut(s)	51, 230, 681, 768, 879
MwoI	GCNNNNNNNGC	7 cut(s)	206, 242, 311, 503, 614, 760, 815
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	2 cut(s)	264, 316
NlaIII	CATG	5 cut(s)	70, 251, 496, 506, 520
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	41, 703
Pfl23II	CGTACG	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	768
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	5 cut(s)	313, 403, 530, 582, 762
PleI	GAGTC	2 cut(s)	146, 880
PpsI	GAGTC	2 cut(s)	146, 880
Psp6I	CCWGG	5 cut(s)	49, 228, 679, 766, 877
PspGI	CCWGG	5 cut(s)	49, 228, 679, 766, 877
PspLI	CGTACG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	4 cut(s)	226, 468, 683, 693
PsyI	GACNNNGTC	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	371, 413
RsaNI	GTAC	2 cut(s)	370, 412
RseI	CAYNNNNRTG	3 cut(s)	218, 438, 855
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	5 cut(s)	312, 402, 529, 581, 761
Sau3AI	GATC	2 cut(s)	264, 316
Sau96I	GGNCC	4 cut(s)	226, 468, 683, 693
SchI	GAGTC	2 cut(s)	146, 881
ScrFI	CCNGG	6 cut(s)	51, 230, 662, 681, 768, 879
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	4 cut(s)	232, 277, 666, 719
SfcI	CTRYAG	1 cut(s)	893
SinI	GGWCC	3 cut(s)	468, 683, 693
SmiMI	CAYNNNNRTG	3 cut(s)	218, 438, 855
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	306, 334, 537
SsiI	CCGC	3 cut(s)	166, 170, 401
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	6 cut(s)	49, 228, 660, 679, 766, 877
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	258, 327, 438
TasI	AATT	3 cut(s)	306, 334, 537
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	41, 703
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	311, 528, 580, 760
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	83, 481, 533
TspGWI	ACGGA	1 cut(s)	254
Tth111I	GACNNNGTC	1 cut(s)	768
VpaK11BI	GGWCC	3 cut(s)	468, 683, 693
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.