Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Forward (+)

68171666 .. 68172542

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035543

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCTGGTGGCAATAAGAAATTTCCTCCTCAAAAGCAAGAATCTCAGTCTGGAAAAGAGCATGTCATGAAACCTAACCCTCAGTACTCAAACCCGGATTACAAACCCTCCAATAAGCTCCAAGGGAAGGGTCAGGAGGACCAGGATGCACACAACACATTTGAAATGATCAAGAAGGTGAAAACTCCTAATTCCACGGATCCAATTGCAGTCGCAGCTGACCTCGGTTTTAATGAGAATTGCAAGAAGATCGTAGAGGAGGTGACAAAAGCATATGGATGCATTGATATTCTGGTTAACAATGCAGCAGAGCAGTACAAGAACAGCTCGGTGGCAGAGATTGATGAGCCTAGTCTTGAAAGGGTGTTCAGAACCATTAATGCATACAAGAGAAACCAGAAGCTGCTTGATTATATAGCAACCAAGGGAGCCATTGTGGCATTCGTGAGAGGATTGTCACTTGAGTTATTAGTGAACAAAGGCATCAGTGTCAATGGTGTAGCTCCTAGACCAATATGGAAGCCGTTGATTCCAGCATCTTTTGATGAGGAGGAAACTACAAACTTCGGCTCTCAAGTGCCAATGCAACGAGCTGGGCAGTCCTGTGAGGTTGCGCCATACTATGTCTTCCTTGCTTCCAATGCTTTCTTTTCTTATATTACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

224

Amino Acids

24.66

Weight (kDa)

7.63

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	56 - 126	2.5e-07	short chain dehydrogenase
adh_short_C2	PF13561	138 - 223	1.7e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	197, 210
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	2 cut(s)	89, 320
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	167, 362
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	6 cut(s)	121, 221, 330, 406, 506, 596
AluI	AGCT	6 cut(s)	121, 221, 330, 406, 506, 596
AlwI	GGATC	2 cut(s)	197, 210
AlwNI	CAGNNNCTG	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	218, 308, 406
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	193, 277
AvaII	GGWCC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	3 cut(s)	230, 320, 393
BceAI	ACGGC	1 cut(s)	511
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	2 cut(s)	354, 510
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	219, 309, 407
BlsI	GCNGC	3 cut(s)	220, 310, 408
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	98, 146
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	204, 433
BmrFI	CCNGG	2 cut(s)	98, 146
BmsI	GCATC	4 cut(s)	139, 272, 495, 548
BpiI	GAAGAC	1 cut(s)	622
BpuEI	CTTGAG	2 cut(s)	485, 561
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	124, 198, 226, 426
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	124, 198, 226, 426
BseGI	GGATG	2 cut(s)	154, 287
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	62, 98
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	3 cut(s)	21, 275, 566
BseXI	GCAGC	3 cut(s)	230, 320, 393
BseYI	CCCAGC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	171, 202, 252
BspCNI	CTCAG	2 cut(s)	61, 97
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	204, 433
BspPI	GGATC	2 cut(s)	197, 210
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	4 cut(s)	124, 198, 226, 426
BssMI	GATC	3 cut(s)	171, 202, 252
BssT1I	CCWWGG	2 cut(s)	124, 426
Bst2UI	CCWGG	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	48, 84
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	154, 287
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	3 cut(s)	174, 205, 255
BstMBI	GATC	3 cut(s)	171, 202, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 440, 644
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	96, 144
BstV1I	GCAGC	3 cut(s)	230, 320, 393
BstV2I	GAAGAC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	154, 287
BtsIMutI	CAGTG	1 cut(s)	496
CaiI	CAGNNNCTG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	88, 319
CviAII	CATG	2 cut(s)	65, 70
CviQI	GTAC	2 cut(s)	88, 319
DdeI	CTNAG	2 cut(s)	48, 84
DpnI	GATC	3 cut(s)	173, 204, 254
DpnII	GATC	3 cut(s)	171, 202, 252
Eco130I	CCWWGG	2 cut(s)	124, 426
Eco47I	GGWCC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	124, 426
EcoT22I	ATGCAT	2 cut(s)	287, 388
ErhI	CCWWGG	2 cut(s)	124, 426
FaeI	CATG	2 cut(s)	68, 73
FatI	CATG	2 cut(s)	64, 69
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	219, 309, 407
FokI	GGATG	2 cut(s)	161, 294
Fsp4HI	GCNGC	3 cut(s)	219, 309, 407
FspBI	CTAG	2 cut(s)	354, 510
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	3 cut(s)	219, 309, 407
GsaI	CCCAGC	1 cut(s)	600
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	68, 73
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	44, 532
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	193, 277
Hpy166II	GTNNAC	2 cut(s)	301, 478
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	6 cut(s)	54, 70, 137, 175, 359, 448
Hpy8I	GTNNAC	2 cut(s)	301, 478
HpyAV	CCTTC	2 cut(s)	124, 172
HpyCH4V	TGCA	7 cut(s)	152, 212, 246, 285, 308, 386, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 440, 644
HpyF3I	CTNAG	2 cut(s)	48, 84
Hsp92II	CATG	2 cut(s)	68, 73
HspAI	GCGC	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	171
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	171, 202, 252
LmnI	GCTCC	3 cut(s)	126, 431, 511
Lsp1109I	GCAGC	3 cut(s)	230, 320, 393
LweI	GCATC	4 cut(s)	139, 272, 495, 548
MaeI	CTAG	2 cut(s)	354, 510
MaeIII	GTNAC	2 cut(s)	265, 459
MalI	GATC	3 cut(s)	173, 204, 254
MboI	GATC	3 cut(s)	171, 202, 252
MboII	GAAGA	2 cut(s)	262, 622
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	4 cut(s)	23, 193, 207, 241
Mph1103I	ATGCAT	2 cut(s)	287, 388
MseI	TTAA	3 cut(s)	234, 300, 381
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	98, 146
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	218, 440, 644
NciI	CCSGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	171, 202, 252
NlaIII	CATG	2 cut(s)	68, 73
NlaIV	GGNNCC	2 cut(s)	204, 433
NmuCI	GTSAC	2 cut(s)	265, 459
NsiI	ATGCAT	2 cut(s)	287, 388
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	1 cut(s)	69
PctI	GAATGC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	44, 532
PkrI	GCNGC	3 cut(s)	220, 310, 408
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	204, 433
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	89, 320
RsaNI	GTAC	2 cut(s)	88, 319
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	234, 300, 381
SatI	GCNGC	3 cut(s)	219, 309, 407
Sau3AI	GATC	3 cut(s)	171, 202, 252
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	98, 146
SfaNI	GCATC	4 cut(s)	139, 272, 495, 548
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	464, 576
SmoI	CTYRAG	2 cut(s)	464, 576
Sse9I	AATT	4 cut(s)	23, 193, 207, 241
SspMI	CTAG	2 cut(s)	354, 510
StyD4I	CCNGG	2 cut(s)	96, 144
StyI	CCWWGG	2 cut(s)	124, 426
TasI	AATT	4 cut(s)	23, 193, 207, 241
TatI	WGTACW	2 cut(s)	87, 318
TfiI	GAWTC	2 cut(s)	44, 532
Tru1I	TTAA	3 cut(s)	234, 300, 381
Tru9I	TTAA	3 cut(s)	234, 300, 381
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	265, 459
TseI	GCWGC	3 cut(s)	218, 308, 406
Tsp45I	GTSAC	2 cut(s)	265, 459
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	2 cut(s)	354, 510
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	287, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.