MD04G1206800.v1.1

Glucose and ribitol

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
29235744 .. 29237536
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1206800.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGCTTCAGGTGGAAAGCAGCAATTCCCTCCTCAAAGGCAAGGAACTCAGCCAGGGAAAGAACATGCCATGGATCCCACTCCTCAGTTCACAAACCCTGATTACAAACCCTCCAATAAGCTCCAAGGTAAGGTGGCGCTTGTGACAGGTGGCGACTCCGGGATCGGCCCAACGGTGTGCCATCTGTTTGCTCAGGAGGGTGCAACGGTGGCCTTCACGTATGTGAAGGGACATGAGGACAAGGACGCAAAGGAGACGCTCCAAGCGATCAAGCAGGTCAAGGCTTCTGATGCCAAGGAGCCCATGGCTCTTGCTGCTGATCTGGGATTTGATGAAAATTGCAAGAAGGTTGTCGATGAGGTTGCCAACGCGTACGGCCGCATTGATATTCTGGTTAACAATGCCGCCGAGCAGTACAAGGCGGGCTCTGTTGAGGATATTGATGAGGCCCGTTTGGAGAGGGTGTTTAGGACCAACATATTTTCTTGTTTCTTCATGACAGGGCATGCACTGAAGCACATGAAAGAAGGTGGCTCCGTTATTTGCACAACATCGATCGTCGCGTACAAGGGAAGTGACAGCCTACTTGATTACTGTGCAACTAAGGGCGCCATCGTAGCTTTCATAAGAGGACTTGCACTGCAGCAGGTTAAACGAGGCATTCGAGTTAATGGTGTAGCTCCTGGACCGATATGGACCCCGTTGATTCCAGCATCTTTCGATGAGGAGGAGGTCCAACGATTTGGGAACGAAGTGCCAATGCAGCGCGCCGGGCAGCCGTATGAGGTTGGACCGACCTACGTCTTCCTTGCTTCAGAAGCTTTCTCTTCTTACTACACCGGCCAAGTCTTCCATCCCGACGGTGGCGTTATAGTAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

295

Amino Acids

31.76

Weight (kDa)

5.73

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 38 - 243 8.4e-08 SDR-like rossmann domain
adh_short PF00106 44 - 240 3.5e-43 short chain dehydrogenase
KR PF08659 46 - 211 1.1e-08 KR domain
adh_short_C2 PF13561 52 - 290 1.4e-53 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 265, 637
AccB1I GGYRCC 1 cut(s) 608
AccII CGCG 3 cut(s) 371, 563, 768
AciI CCGC 3 cut(s) 379, 405, 422
AclWI GGATC 3 cut(s) 68, 81, 170
AcoI YGGCCR 2 cut(s) 376, 841
AcuI CTGAAG 2 cut(s) 533, 798
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 3 cut(s) 374, 416, 566
AfiI CCNNNNNNNGG 2 cut(s) 130, 863
AflIII ACRYGT 1 cut(s) 369
AjnI CCWGG 2 cut(s) 52, 682
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 4 cut(s) 121, 620, 680, 821
AluI AGCT 4 cut(s) 121, 620, 680, 821
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 3 cut(s) 68, 81, 170
AoxI GGCC 5 cut(s) 166, 210, 376, 447, 841
ApeKI GCWGC 5 cut(s) 19, 314, 643, 763, 775
AspLEI GCGC 4 cut(s) 139, 611, 768, 770
AspS9I GGNCC 7 cut(s) 167, 448, 471, 686, 696, 733, 791
AsuC2I CCSGG 2 cut(s) 160, 772
AvaII GGWCC 5 cut(s) 471, 686, 696, 733, 791
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 2 cut(s) 303, 428
BbsI GAAGAC 2 cut(s) 796, 841
BbvI GCAGC 5 cut(s) 31, 301, 655, 775, 787
BccI CCATC 3 cut(s) 189, 620, 861
BceAI ACGGC 2 cut(s) 391, 763
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 54, 684
BcnI CCSGG 2 cut(s) 160, 772
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 641
BfoI RGCGCY 2 cut(s) 140, 612
BfuAI ACCTGC 2 cut(s) 265, 637
BisI GCNGC 7 cut(s) 20, 315, 379, 405, 644, 764, 776
BlsI GCNGC 7 cut(s) 21, 316, 380, 406, 645, 765, 777
Bme1390I CCNGG 4 cut(s) 54, 160, 684, 772
Bme18I GGWCC 5 cut(s) 471, 686, 696, 733, 791
BmgT120I GGNCC 7 cut(s) 167, 448, 471, 686, 696, 733, 791
BmiI GGNNCC 5 cut(s) 75, 300, 535, 610, 698
BmrFI CCNGG 4 cut(s) 54, 160, 684, 772
BmsI GCATC 2 cut(s) 280, 722
BoxI GACNNNNGTC 1 cut(s) 800
BpiI GAAGAC 2 cut(s) 796, 841
Bpu10I CCTNAGC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 160, 772
Bsa29I ATCGAT 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 5 cut(s) 53, 69, 124, 294, 303
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 863
Bse118I RCCGGY 1 cut(s) 839
BseBI CCWGG 2 cut(s) 54, 684
BseCI ATCGAT 1 cut(s) 554
BseDI CCNNGG 5 cut(s) 53, 69, 124, 294, 303
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 2 cut(s) 130, 863
BseMII CTCAG 3 cut(s) 62, 98, 206
BsePI GCGCGC 1 cut(s) 766
BseRI GAGGAG 4 cut(s) 21, 72, 740, 743
BseX3I CGGCCG 1 cut(s) 376
BseXI GCAGC 5 cut(s) 31, 301, 655, 775, 787
Bsh1236I CGCG 3 cut(s) 371, 563, 768
Bsh1285I CGRYCG 2 cut(s) 379, 558
BshFI GGCC 5 cut(s) 168, 212, 378, 449, 843
BshNI GGYRCC 1 cut(s) 608
BshVI ATCGAT 1 cut(s) 554
BsiEI CGRYCG 2 cut(s) 379, 558
BsiSI CCGG 3 cut(s) 159, 771, 840
BsiWI CGTACG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 130, 863
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 660
BsnI GGCC 5 cut(s) 168, 212, 378, 449, 843
Bsp1286I GDGCHC 2 cut(s) 303, 428
Bsp143I GATC 5 cut(s) 73, 162, 267, 319, 555
Bsp19I CCATGG 2 cut(s) 69, 303
BspACI CCGC 3 cut(s) 379, 405, 422
BspANI GGCC 5 cut(s) 168, 212, 378, 449, 843
BspCNI CTCAG 3 cut(s) 61, 97, 205
BspDI ATCGAT 1 cut(s) 554
BspFNI CGCG 3 cut(s) 371, 563, 768
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 5 cut(s) 75, 300, 535, 610, 698
BspMAI CTGCAG 1 cut(s) 645
BspMI ACCTGC 2 cut(s) 265, 637
BspPI GGATC 3 cut(s) 68, 81, 170
BspT107I GGYRCC 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 839
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 5 cut(s) 53, 69, 124, 294, 303
BssHII GCGCGC 1 cut(s) 766
BssMI GATC 5 cut(s) 73, 162, 267, 319, 555
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 4 cut(s) 69, 124, 294, 303
Bst2UI CCWGG 2 cut(s) 54, 684
Bst4CI ACNGT 4 cut(s) 175, 208, 596, 863
Bst6I CTCTTC 1 cut(s) 832
BstACI GRCGYC 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 424, 507, 768
BstDEI CTNAG 4 cut(s) 48, 84, 192, 603
BstDSI CCRYGG 2 cut(s) 69, 303
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 3 cut(s) 371, 563, 768
BstH2I RGCGCY 2 cut(s) 140, 612
BstHHI GCGC 4 cut(s) 139, 611, 768, 770
BstKTI GATC 5 cut(s) 76, 165, 270, 322, 558
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 5 cut(s) 73, 162, 267, 319, 555
BstMCI CGRYCG 2 cut(s) 379, 558
BstMWI GCNNNNNNNGC 7 cut(s) 209, 290, 314, 617, 763, 772, 818
BstNI CCWGG 2 cut(s) 54, 684
BstNSI RCATGY 2 cut(s) 68, 509
BstPAI GACNNNNGTC 1 cut(s) 800
BstSCI CCNGG 4 cut(s) 52, 158, 682, 770
BstSFI CTRYAG 1 cut(s) 641
BstUI CGCG 3 cut(s) 371, 563, 768
BstV1I GCAGC 5 cut(s) 31, 301, 655, 775, 787
BstV2I GAAGAC 2 cut(s) 796, 841
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 554
BsuRI GGCC 5 cut(s) 168, 212, 378, 449, 843
BsuTUI ATCGAT 1 cut(s) 554
BtgI CCRYGG 2 cut(s) 69, 303
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 509, 638
BveI ACCTGC 2 cut(s) 265, 637
Cac8I GCNNGC 3 cut(s) 424, 507, 768
CciI TCATGA 1 cut(s) 495
CfoI GCGC 4 cut(s) 139, 611, 768, 770
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 7 cut(s) 167, 448, 471, 686, 696, 733, 791
ClaI ATCGAT 1 cut(s) 554
CseI GACGC 2 cut(s) 254, 265
Csp6I GTAC 3 cut(s) 373, 415, 565
CviAII CATG 7 cut(s) 65, 70, 233, 304, 496, 506, 520
CviQI GTAC 3 cut(s) 373, 415, 565
DdeI CTNAG 4 cut(s) 48, 84, 192, 603
DinI GGCGCC 1 cut(s) 610
DpnI GATC 5 cut(s) 75, 164, 269, 321, 557
DpnII GATC 5 cut(s) 73, 162, 267, 319, 555
EaeI YGGCCR 2 cut(s) 376, 841
EagI CGGCCG 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
EclXI CGGCCG 1 cut(s) 376
Eco130I CCWWGG 4 cut(s) 69, 124, 294, 303
Eco24I GRGCYC 2 cut(s) 303, 428
Eco47I GGWCC 5 cut(s) 471, 686, 696, 733, 791
Eco52I CGGCCG 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 533, 798
EcoRII CCWGG 2 cut(s) 52, 682
EcoT14I CCWWGG 4 cut(s) 69, 124, 294, 303
EcoT38I GRGCYC 2 cut(s) 303, 428
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 4 cut(s) 69, 124, 294, 303
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 7 cut(s) 68, 73, 236, 307, 499, 509, 523
FaqI GGGAC 1 cut(s) 243
FatI CATG 7 cut(s) 64, 69, 232, 303, 495, 505, 519
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 7 cut(s) 20, 315, 379, 405, 644, 764, 776
FokI GGATG 1 cut(s) 840
FriOI GRGCYC 2 cut(s) 303, 428
Fsp4HI GCNGC 7 cut(s) 20, 315, 379, 405, 644, 764, 776
GlaI GCGC 4 cut(s) 138, 610, 767, 769
GluI GCNGC 7 cut(s) 20, 315, 379, 405, 644, 764, 776
HaeII RGCGCY 2 cut(s) 140, 612
HaeIII GGCC 5 cut(s) 168, 212, 378, 449, 843
HapII CCGG 3 cut(s) 159, 771, 840
HgaI GACGC 2 cut(s) 254, 265
HhaI GCGC 4 cut(s) 139, 611, 768, 770
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 7 cut(s) 68, 73, 236, 307, 499, 509, 523
Hin6I GCGC 4 cut(s) 137, 609, 766, 768
HinP1I GCGC 4 cut(s) 137, 609, 766, 768
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 2 cut(s) 155, 706
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 3 cut(s) 159, 771, 840
Hpy166II GTNNAC 2 cut(s) 90, 397
Hpy188I TCNGA 2 cut(s) 289, 817
Hpy188III TCNNGA 3 cut(s) 194, 496, 857
Hpy8I GTNNAC 2 cut(s) 90, 397
Hpy99I CGWCG 2 cut(s) 563, 863
HpyAV CCTTC 4 cut(s) 220, 223, 340, 521
HpyCH4III ACNGT 4 cut(s) 175, 208, 596, 863
HpyCH4IV ACGT 2 cut(s) 218, 801
HpyCH4V TGCA 8 cut(s) 203, 342, 509, 546, 599, 638, 643, 763
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 290, 314, 617, 763, 772, 818
HpyF3I CTNAG 4 cut(s) 48, 84, 192, 603
HpySE526I ACGT 2 cut(s) 218, 801
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 7 cut(s) 68, 73, 236, 307, 499, 509, 523
HspAI GCGC 4 cut(s) 137, 609, 766, 768
KasI GGCGCC 1 cut(s) 608
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 73, 162, 267, 319, 555
LmnI GCTCC 5 cut(s) 126, 264, 298, 539, 685
Lsp1109I GCAGC 5 cut(s) 31, 301, 655, 775, 787
LweI GCATC 2 cut(s) 280, 722
MaeII ACGT 2 cut(s) 218, 801
MaeIII GTNAC 2 cut(s) 142, 575
MalI GATC 5 cut(s) 75, 164, 269, 321, 557
MboI GATC 5 cut(s) 73, 162, 267, 319, 555
MboII GAAGA 4 cut(s) 484, 796, 819, 841
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 303, 428
MluCI AATT 2 cut(s) 23, 337
MluI ACGCGT 1 cut(s) 369
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 760, 769
MseI TTAA 3 cut(s) 396, 651, 669
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 3 cut(s) 159, 771, 840
MspR9I CCNGG 4 cut(s) 54, 160, 684, 772
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 2 cut(s) 54, 684
MvnI CGCG 3 cut(s) 371, 563, 768
MwoI GCNNNNNNNGC 7 cut(s) 209, 290, 314, 617, 763, 772, 818
NarI GGCGCC 1 cut(s) 609
NciI CCSGG 2 cut(s) 160, 772
NcoI CCATGG 2 cut(s) 69, 303
NdeII GATC 5 cut(s) 73, 162, 267, 319, 555
NlaIII CATG 7 cut(s) 68, 73, 236, 307, 499, 509, 523
NlaIV GGNNCC 5 cut(s) 75, 300, 535, 610, 698
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 142, 575
NspI RCATGY 2 cut(s) 68, 509
OliI CACNNNNGTG 1 cut(s) 221
PaeI GCATGC 1 cut(s) 509
PagI TCATGA 1 cut(s) 495
PauI GCGCGC 1 cut(s) 766
PcsI WCGNNNNNNNCGW 3 cut(s) 263, 560, 661
PctI GAATGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 706
Pfl23II CGTACG 1 cut(s) 372
PfoI TCCNGGA 2 cut(s) 158, 682
PkrI GCNGC 7 cut(s) 21, 316, 380, 406, 645, 765, 777
Ple19I CGATCG 1 cut(s) 558
PleI GAGTC 1 cut(s) 149
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 52, 682
PspGI CCWGG 2 cut(s) 52, 682
PspLI CGTACG 1 cut(s) 372
PspN4I GGNNCC 5 cut(s) 75, 300, 535, 610, 698
PspPI GGNCC 7 cut(s) 167, 448, 471, 686, 696, 733, 791
PstI CTGCAG 1 cut(s) 645
PsuI RGATCY 1 cut(s) 73
PteI GCGCGC 1 cut(s) 766
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 3 cut(s) 374, 416, 566
RsaNI GTAC 3 cut(s) 373, 415, 565
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 3 cut(s) 396, 651, 669
SatI GCNGC 7 cut(s) 20, 315, 379, 405, 644, 764, 776
Sau3AI GATC 5 cut(s) 73, 162, 267, 319, 555
Sau96I GGNCC 7 cut(s) 167, 448, 471, 686, 696, 733, 791
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 54, 160, 684, 772
SduI GDGCHC 2 cut(s) 303, 428
SfaNI GCATC 2 cut(s) 280, 722
SfcI CTRYAG 1 cut(s) 641
SfoI GGCGCC 1 cut(s) 610
SinI GGWCC 5 cut(s) 471, 686, 696, 733, 791
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 509
Sse9I AATT 2 cut(s) 23, 337
SsiI CCGC 3 cut(s) 379, 405, 422
SspDI GGCGCC 1 cut(s) 608
StyD4I CCNGG 4 cut(s) 52, 158, 682, 770
StyI CCWWGG 4 cut(s) 69, 124, 294, 303
TaaI ACNGT 4 cut(s) 175, 208, 596, 863
TaiI ACGT 2 cut(s) 221, 804
TaqI TCGA 4 cut(s) 354, 554, 664, 720
TaqII GACCGA 2 cut(s) 703, 808
TasI AATT 2 cut(s) 23, 337
TatI WGTACW 1 cut(s) 414
TauI GCSGC 2 cut(s) 381, 407
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 3 cut(s) 396, 651, 669
Tru9I TTAA 3 cut(s) 396, 651, 669
TscAI CASTG 2 cut(s) 516, 645
TseFI GTSAC 2 cut(s) 142, 575
TseI GCWGC 5 cut(s) 19, 314, 643, 763, 775
Tsp45I GTSAC 2 cut(s) 142, 575
TspDTI ATGAA 4 cut(s) 348, 484, 536, 613
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 2 cut(s) 516, 645
VpaK11BI GGWCC 5 cut(s) 471, 686, 696, 733, 791
XceI RCATGY 2 cut(s) 68, 509
XcmI CCANNNNNNNNNTGG 2 cut(s) 301, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.