Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

4157126 .. 4158816

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG061500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCTGGTGGCAATCAGAAATTTCCTCCTCAGAAGCAAGAATCTCAGCCTGGAAAAGAGCATGTCATGAACCCTAATCCTCAGTACTCAAACCCGGATTACAAACCCTCCGATAAGCTCCAAGGGAAGGTAGCACTAGTGACAGGTGGAGACTCCGGGATAGGGCGAGCGGTGTGCCATTGCTTTGCTCAGGAGGGTGCAACAGTGGCCTTCACCTTTGTGAAGGGTCAGGAGGACCAGGATGCACACGACACGCTTGAAATGATCAAGAAGGTGAAAACTCCTGATTCCAAGGATCCAATGGCAGTTGCAGCTGATCTTGGTTTTGATGAGAATTGCAAGAAGGCCGTAGAGGAGGTGACAAAAGCATATGGATGCATTGATATTCTGGTTAACAATGCAGCAGAGCAGTACAAGAACAGCTCGGTGGCAGAGATTGATGAGTCTCGTCTTGAAAGGGTGTTCAGAACCAATATCTTTTCTTACTTTTTTGTGACAAGGCATGCTTTGAAGCACATGAAAAAAGGCAGCAGCATAATTTGCTCAACATCAGTTAATGCATACAAGGGAAACCAGAAGCTGCTTGATTATACAGCAACAAAGGGAGCCATTGTGGCATTTGTAAGAGGATTGTCACTTGAGCTAGTGAACGAAGGCATCCGTGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCATTGATTCCAGCATCTTTCGATGAGGAGGAAACTGCAAACTTTGGCTCTGAAGTGCCAATGCAGCGAGCTGGGCAGCCCTGTGAGGTTGCGCCATCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTATATAAGTGGCCAAGTGATCCATCCTAATGGCGGGGTTGTAGTAAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

294

Amino Acids

31.8

Weight (kDa)

5.91

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	39 - 245	8.9e-10	SDR-like rossmann domain
adh_short	PF00106	44 - 240	1.5e-43	short chain dehydrogenase
KR	PF08659	46 - 210	1.9e-08	KR domain
adh_short_C2	PF13561	52 - 290	1.4e-51	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	2 cut(s)	173, 864
AclWI	GGATC	3 cut(s)	293, 306, 844
AcoI	YGGCCR	1 cut(s)	841
AcsI	RAATTY	2 cut(s)	23, 877
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	2 cut(s)	89, 416
AfiI	CCNNNNNNNGG	3 cut(s)	130, 165, 863
AgsI	TTSAA	3 cut(s)	263, 458, 514
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	52, 240, 682
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	7 cut(s)	121, 317, 426, 583, 646, 680, 770
AluI	AGCT	7 cut(s)	121, 317, 426, 583, 646, 680, 770
Alw26I	GTCTC	2 cut(s)	147, 453
AlwI	GGATC	3 cut(s)	293, 306, 844
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	210, 348, 841
ApeKI	GCWGC	7 cut(s)	314, 404, 531, 534, 583, 763, 775
ApoI	RAATTY	2 cut(s)	23, 877
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	3 cut(s)	238, 686, 696
AsuC2I	CCSGG	2 cut(s)	98, 160
AsuHPI	GGTGA	3 cut(s)	208, 289, 373
AvaII	GGWCC	3 cut(s)	238, 686, 696
BalI	TGGCCA	1 cut(s)	843
BamHI	GGATCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	796
BbvI	GCAGC	7 cut(s)	326, 416, 543, 546, 570, 775, 787
BccI	CCATC	2 cut(s)	802, 861
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	3 cut(s)	54, 242, 684
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	2 cut(s)	98, 160
BcoDI	GTCTC	2 cut(s)	147, 453
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	140, 647
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	7 cut(s)	315, 405, 532, 535, 584, 764, 776
BlsI	GCNGC	7 cut(s)	316, 406, 533, 536, 585, 765, 777
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	5 cut(s)	54, 98, 160, 242, 684
Bme18I	GGWCC	3 cut(s)	238, 686, 696
BmgT120I	GGNCC	3 cut(s)	238, 686, 696
BmiI	GGNNCC	3 cut(s)	300, 610, 698
BmrFI	CCNGG	5 cut(s)	54, 98, 160, 242, 684
BmsI	GCATC	4 cut(s)	235, 368, 669, 722
BpiI	GAAGAC	1 cut(s)	796
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	2 cut(s)	98, 160
BsaJI	CCNNGG	2 cut(s)	124, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 165, 863
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	3 cut(s)	54, 242, 684
BseDI	CCNNGG	2 cut(s)	124, 294
BseGI	GGATG	5 cut(s)	250, 383, 660, 794, 853
BseLI	CCNNNNNNNGG	3 cut(s)	130, 165, 863
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	4 cut(s)	47, 62, 98, 206
BseRI	GAGGAG	3 cut(s)	21, 371, 740
BseXI	GCAGC	7 cut(s)	326, 416, 543, 546, 570, 775, 787
BseYI	CCCAGC	1 cut(s)	770
BshFI	GGCC	3 cut(s)	212, 350, 843
BsiSI	CCGG	2 cut(s)	98, 159
BslI	CCNNNNNNNGG	3 cut(s)	130, 165, 863
BsmAI	GTCTC	2 cut(s)	147, 453
BsnI	GGCC	3 cut(s)	212, 350, 843
Bsp143I	GATC	4 cut(s)	267, 298, 319, 849
BspACI	CCGC	2 cut(s)	173, 864
BspANI	GGCC	3 cut(s)	212, 350, 843
BspCNI	CTCAG	4 cut(s)	46, 61, 97, 205
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	300, 610, 698
BspPI	GGATC	3 cut(s)	293, 306, 844
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	124, 294
BssMI	GATC	4 cut(s)	267, 298, 319, 849
BssT1I	CCWWGG	2 cut(s)	124, 294
Bst2UI	CCWGG	3 cut(s)	54, 242, 684
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	832
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	171, 507, 768
BstDEI	CTNAG	4 cut(s)	33, 48, 84, 192
BstF5I	GGATG	5 cut(s)	250, 383, 660, 794, 853
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	4 cut(s)	270, 301, 322, 852
BstMAI	GTCTC	2 cut(s)	147, 453
BstMBI	GATC	4 cut(s)	267, 298, 319, 849
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 314, 543, 617, 763, 772, 818
BstNI	CCWGG	3 cut(s)	54, 242, 684
BstNSI	RCATGY	2 cut(s)	68, 509
BstSCI	CCNGG	5 cut(s)	52, 96, 158, 240, 682
BstV1I	GCAGC	7 cut(s)	326, 416, 543, 546, 570, 775, 787
BstV2I	GAAGAC	1 cut(s)	796
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	212, 350, 843
BtsCI	GGATG	5 cut(s)	250, 383, 660, 794, 853
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	171, 507, 768
CaiI	CAGNNNCTG	1 cut(s)	583
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	793
Cfr13I	GGNCC	3 cut(s)	238, 686, 696
Csp6I	GTAC	2 cut(s)	88, 415
CviAII	CATG	4 cut(s)	65, 70, 506, 520
CviQI	GTAC	2 cut(s)	88, 415
DdeI	CTNAG	4 cut(s)	33, 48, 84, 192
DpnI	GATC	4 cut(s)	269, 300, 321, 851
DpnII	GATC	4 cut(s)	267, 298, 319, 849
EaeI	YGGCCR	1 cut(s)	841
Eam1104I	CTCTTC	1 cut(s)	832
EarI	CTCTTC	1 cut(s)	832
Eco130I	CCWWGG	2 cut(s)	124, 294
Eco47I	GGWCC	3 cut(s)	238, 686, 696
Eco57I	CTGAAG	1 cut(s)	771
EcoRII	CCWGG	3 cut(s)	52, 240, 682
EcoT14I	CCWWGG	2 cut(s)	124, 294
EcoT22I	ATGCAT	2 cut(s)	383, 565
ErhI	CCWWGG	2 cut(s)	124, 294
FaeI	CATG	4 cut(s)	68, 73, 509, 523
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FatI	CATG	4 cut(s)	64, 69, 505, 519
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	7 cut(s)	315, 405, 532, 535, 584, 764, 776
FokI	GGATG	5 cut(s)	257, 390, 647, 781, 840
Fsp4HI	GCNGC	7 cut(s)	315, 405, 532, 535, 584, 764, 776
FspBI	CTAG	2 cut(s)	140, 647
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	7 cut(s)	315, 405, 532, 535, 584, 764, 776
GsaI	CCCAGC	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	212, 350, 843
HapII	CCGG	2 cut(s)	98, 159
HhaI	GCGC	1 cut(s)	793
Hin1II	CATG	4 cut(s)	68, 73, 509, 523
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	5 cut(s)	44, 155, 290, 446, 706
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	98, 159
HphI	GGTGA	3 cut(s)	208, 289, 373
Hpy166II	GTNNAC	2 cut(s)	397, 652
Hpy188I	TCNGA	5 cut(s)	21, 36, 115, 470, 751
Hpy188III	TCNNGA	7 cut(s)	70, 194, 233, 271, 287, 455, 882
Hpy8I	GTNNAC	2 cut(s)	397, 652
HpyAV	CCTTC	6 cut(s)	124, 220, 223, 268, 340, 650
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	9 cut(s)	203, 248, 314, 342, 381, 404, 563, 737, 763
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 314, 543, 617, 763, 772, 818
HpyF3I	CTNAG	4 cut(s)	33, 48, 84, 192
Hsp92II	CATG	4 cut(s)	68, 73, 509, 523
HspAI	GCGC	1 cut(s)	791
Ksp22I	TGATCA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	267, 298, 319, 849
LmnI	GCTCC	3 cut(s)	126, 608, 685
Lsp1109I	GCAGC	7 cut(s)	326, 416, 543, 546, 570, 775, 787
LweI	GCATC	4 cut(s)	235, 368, 669, 722
MaeI	CTAG	2 cut(s)	140, 647
MaeIII	GTNAC	4 cut(s)	142, 361, 496, 636
MalI	GATC	4 cut(s)	269, 300, 321, 851
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	4 cut(s)	267, 298, 319, 849
MboII	GAAGA	2 cut(s)	796, 819
MflI	RGATCY	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	843
MluCI	AATT	4 cut(s)	23, 337, 540, 877
MluNI	TGGCCA	1 cut(s)	843
MlyI	GAGTC	2 cut(s)	149, 455
Mox20I	TGGCCA	1 cut(s)	843
Mph1103I	ATGCAT	2 cut(s)	383, 565
MscI	TGGCCA	1 cut(s)	843
MseI	TTAA	2 cut(s)	396, 558
MslI	CAYNNNNRTG	3 cut(s)	221, 376, 858
Msp20I	TGGCCA	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	98, 159
MspR9I	CCNGG	5 cut(s)	54, 98, 160, 242, 684
MvaI	CCWGG	3 cut(s)	54, 242, 684
MwoI	GCNNNNNNNGC	7 cut(s)	209, 314, 543, 617, 763, 772, 818
NciI	CCSGG	2 cut(s)	98, 160
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	4 cut(s)	267, 298, 319, 849
NlaIII	CATG	4 cut(s)	68, 73, 509, 523
NlaIV	GGNNCC	3 cut(s)	300, 610, 698
NmuCI	GTSAC	4 cut(s)	142, 361, 496, 636
NsiI	ATGCAT	2 cut(s)	383, 565
NspI	RCATGY	2 cut(s)	68, 509
OliI	CACNNNNGTG	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	44, 290, 706
PfoI	TCCNGGA	2 cut(s)	158, 682
PkrI	GCNGC	7 cut(s)	316, 406, 533, 536, 585, 765, 777
PleI	GAGTC	2 cut(s)	149, 454
PpsI	GAGTC	2 cut(s)	149, 454
Psp6I	CCWGG	3 cut(s)	52, 240, 682
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	3 cut(s)	52, 240, 682
PspN4I	GGNNCC	3 cut(s)	300, 610, 698
PspPI	GGNCC	3 cut(s)	238, 686, 696
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	2 cut(s)	89, 416
RsaNI	GTAC	2 cut(s)	88, 415
RseI	CAYNNNNRTG	3 cut(s)	221, 376, 858
SaqAI	TTAA	2 cut(s)	396, 558
SatI	GCNGC	7 cut(s)	315, 405, 532, 535, 584, 764, 776
Sau3AI	GATC	4 cut(s)	267, 298, 319, 849
Sau96I	GGNCC	3 cut(s)	238, 686, 696
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	2 cut(s)	149, 455
ScrFI	CCNGG	5 cut(s)	54, 98, 160, 242, 684
SfaNI	GCATC	4 cut(s)	235, 368, 669, 722
SinI	GGWCC	3 cut(s)	238, 686, 696
SmiMI	CAYNNNNRTG	3 cut(s)	221, 376, 858
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	139
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	4 cut(s)	23, 337, 540, 877
SsiI	CCGC	2 cut(s)	173, 864
SspMI	CTAG	2 cut(s)	140, 647
StyD4I	CCNGG	5 cut(s)	52, 96, 158, 240, 682
StyI	CCWWGG	2 cut(s)	124, 294
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	720
TasI	AATT	4 cut(s)	23, 337, 540, 877
TatI	WGTACW	2 cut(s)	87, 414
TfiI	GAWTC	3 cut(s)	44, 290, 706
Tru1I	TTAA	2 cut(s)	396, 558
Tru9I	TTAA	2 cut(s)	396, 558
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	4 cut(s)	142, 361, 496, 636
TseI	GCWGC	7 cut(s)	314, 404, 531, 534, 583, 763, 775
Tsp45I	GTSAC	4 cut(s)	142, 361, 496, 636
TspDTI	ATGAA	2 cut(s)	86, 536
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	238, 686, 696
XapI	RAATTY	2 cut(s)	23, 877
XceI	RCATGY	2 cut(s)	68, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	2 cut(s)	140, 647
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	383, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.