Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Forward (+)

46042810 .. 46050025

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGACTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAATCTCAGCCTGGAAAAGAACACGCCATGAACCCTAACCCTCAGTTCTCAAACCCAGATTACAAACCCTCTAACAAGCTTCAAGGAAAGGTGGCGATAGTGACCGGAGGAGACTCCGGTGTAGGGCGAGCAGTAAGCCATTACTTTGCTCAGGAGGGTGCAACTGTGGCCTTCACTTATGTGAAGGGCCAGGAGGACACGGATGCACGTGACACACTCGAAATGATCAAGAAGGTGAAAACTTCTGATGCCAAAGACCCTATTGCAATTGCAGCTGATCTCGGTTTCGATGAGAATTGCAGGAGGGTTGTGGAGGAGGTGCAGTACAAGACCAGCTCGGTGGAAGATATCGATGAGGCTCGTATTGAAAGGGTGTTTAGGACCAACATCTTTGCTTACTTTTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATCGGTTGTGGCCTACAAAGGAAATGAGAAGCTGCTTGATTATACAGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGGCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGGTTCCGGCATCTTTTGATGAGGAGGAGACTGCAAAGTATGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTAATGTTCTGGTACTGGTCTGTAGTGTGCTCGCATTTTCTTACTGTTATGTAATTTATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

291

Amino Acids

31.98

Weight (kDa)

6.24

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	43 - 225	8.9e-31	short chain dehydrogenase
adh_short_C2	PF13561	51 - 270	3.5e-40	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	790
AcuI	CTGAAG	1 cut(s)	720
AcvI	CACGTG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	365, 825
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	122, 407, 463
AjnI	CCWGG	4 cut(s)	49, 228, 631, 718
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	118, 314, 375, 532, 595, 629
AluI	AGCT	6 cut(s)	118, 314, 375, 532, 595, 629
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	2 cut(s)	144, 674
AoxI	GGCC	4 cut(s)	207, 226, 510, 790
ApeKI	GCWGC	4 cut(s)	311, 480, 532, 712
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	4 cut(s)	226, 420, 635, 645
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	3 cut(s)	420, 635, 645
BbrPI	CACGTG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	4 cut(s)	323, 492, 519, 724
BccI	CCATC	2 cut(s)	5, 810
BciT130I	CCWGG	4 cut(s)	51, 230, 633, 720
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	144, 674
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	832
BisI	GCNGC	4 cut(s)	312, 481, 533, 713
BlsI	GCNGC	4 cut(s)	313, 482, 534, 714
Bme1390I	CCNGG	5 cut(s)	51, 230, 614, 633, 720
Bme18I	GGWCC	3 cut(s)	420, 635, 645
BmgT120I	GGNCC	4 cut(s)	226, 420, 635, 645
BmiI	GGNNCC	2 cut(s)	647, 657
BmrFI	CCNGG	5 cut(s)	51, 230, 614, 633, 720
BmsI	GCATC	4 cut(s)	232, 277, 618, 671
BpiI	GAAGAC	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	614
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	2 cut(s)	143, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	831
BseBI	CCWGG	4 cut(s)	51, 230, 633, 720
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	4 cut(s)	247, 609, 798, 802
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	59, 95, 203
BseNI	ACTGG	1 cut(s)	831
BseRI	GAGGAG	5 cut(s)	18, 162, 368, 689, 692
BseXI	GCAGC	4 cut(s)	323, 492, 519, 724
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	209, 228, 512, 792
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	5 cut(s)	144, 156, 613, 659, 789
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	144, 674
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	4 cut(s)	209, 228, 512, 792
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	2 cut(s)	264, 316
BspANI	GGCC	4 cut(s)	209, 228, 512, 792
BspCNI	CTCAG	3 cut(s)	58, 94, 202
BspDI	ATCGAT	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	647, 657
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	831
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	2 cut(s)	264, 316
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	4 cut(s)	51, 230, 633, 720
Bst4CI	ACNGT	2 cut(s)	205, 857
Bst6I	CTCTTC	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	168, 456, 744, 843
BstDEI	CTNAG	3 cut(s)	45, 81, 189
BstF5I	GGATG	4 cut(s)	247, 609, 798, 802
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	2 cut(s)	267, 319
BstMAI	GTCTC	2 cut(s)	144, 674
BstMBI	GATC	2 cut(s)	264, 316
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 311, 455, 566, 712, 767
BstNI	CCWGG	4 cut(s)	51, 230, 633, 720
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	5 cut(s)	49, 228, 612, 631, 718
BstSFI	CTRYAG	1 cut(s)	832
BstV1I	GCAGC	4 cut(s)	323, 492, 519, 724
BstV2I	GAAGAC	1 cut(s)	745
BstXI	CCANNNNNNTGG	2 cut(s)	379, 809
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	4 cut(s)	209, 228, 512, 792
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	4 cut(s)	247, 609, 798, 802
Cac8I	GCNNGC	4 cut(s)	168, 456, 744, 843
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	4 cut(s)	226, 420, 635, 645
ClaI	ATCGAT	1 cut(s)	390
CsiI	ACCWGGT	1 cut(s)	718
Csp6I	GTAC	2 cut(s)	364, 824
CviAII	CATG	4 cut(s)	67, 445, 455, 469
CviQI	GTAC	2 cut(s)	364, 824
DdeI	CTNAG	3 cut(s)	45, 81, 189
DpnI	GATC	2 cut(s)	266, 318
DpnII	GATC	2 cut(s)	264, 316
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	420, 635, 645
Eco57I	CTGAAG	1 cut(s)	720
Eco72I	CACGTG	1 cut(s)	248
EcoRII	CCWGG	4 cut(s)	49, 228, 631, 718
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	70, 448, 458, 472
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	4 cut(s)	66, 444, 454, 468
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	312, 481, 533, 713
FokI	GGATG	4 cut(s)	254, 596, 785, 789
Fsp4HI	GCNGC	4 cut(s)	312, 481, 533, 713
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	4 cut(s)	312, 481, 533, 713
HaeIII	GGCC	4 cut(s)	209, 228, 512, 792
HapII	CCGG	5 cut(s)	144, 156, 613, 659, 789
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	4 cut(s)	70, 448, 458, 472
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	5, 41, 152
HpaII	CCGG	5 cut(s)	144, 156, 613, 659, 789
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	3 cut(s)	10, 286, 700
Hpy188III	TCNNGA	3 cut(s)	191, 268, 574
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	4 cut(s)	217, 220, 265, 470
HpyCH4III	ACNGT	2 cut(s)	205, 857
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	9 cut(s)	200, 245, 305, 311, 339, 361, 495, 686, 712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 311, 455, 566, 712, 767
HpyF3I	CTNAG	3 cut(s)	45, 81, 189
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	70, 448, 458, 472
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 316
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	4 cut(s)	323, 492, 519, 724
LweI	GCATC	4 cut(s)	232, 277, 618, 671
MabI	ACCWGGT	1 cut(s)	718
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	139, 248
MalI	GATC	2 cut(s)	266, 318
MboI	GATC	2 cut(s)	264, 316
MboII	GAAGA	3 cut(s)	395, 745, 768
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	4 cut(s)	306, 334, 489, 864
MlyI	GAGTC	1 cut(s)	146
MslI	CAYNNNNRTG	2 cut(s)	218, 807
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	5 cut(s)	144, 156, 613, 659, 789
MspR9I	CCNGG	5 cut(s)	51, 230, 614, 633, 720
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	4 cut(s)	51, 230, 633, 720
MwoI	GCNNNNNNNGC	6 cut(s)	206, 311, 455, 566, 712, 767
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	2 cut(s)	264, 316
NlaIII	CATG	4 cut(s)	70, 448, 458, 472
NlaIV	GGNNCC	2 cut(s)	647, 657
NmuCI	GTSAC	2 cut(s)	139, 248
NspI	RCATGY	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	720
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	313, 482, 534, 714
PleI	GAGTC	1 cut(s)	146
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	4 cut(s)	49, 228, 631, 718
PspCI	CACGTG	1 cut(s)	248
PspGI	CCWGG	4 cut(s)	49, 228, 631, 718
PspN4I	GGNNCC	2 cut(s)	647, 657
PspPI	GGNCC	4 cut(s)	226, 420, 635, 645
PsyI	GACNNNGTC	1 cut(s)	720
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	365, 825
RsaNI	GTAC	2 cut(s)	364, 824
RseI	CAYNNNNRTG	2 cut(s)	218, 807
SatI	GCNGC	4 cut(s)	312, 481, 533, 713
Sau3AI	GATC	2 cut(s)	264, 316
Sau96I	GGNCC	4 cut(s)	226, 420, 635, 645
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	5 cut(s)	51, 230, 614, 633, 720
SduI	GDGCHC	1 cut(s)	843
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	4 cut(s)	232, 277, 618, 671
SfcI	CTRYAG	1 cut(s)	832
SinI	GGWCC	3 cut(s)	420, 635, 645
SmiMI	CAYNNNNRTG	2 cut(s)	218, 807
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	306, 334, 489, 864
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	5 cut(s)	49, 228, 612, 631, 718
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	205, 857
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	258, 327, 390
TasI	AATT	4 cut(s)	306, 334, 489, 864
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	139, 248
TseI	GCWGC	4 cut(s)	311, 480, 532, 712
Tsp45I	GTSAC	2 cut(s)	139, 248
TspDTI	ATGAA	3 cut(s)	83, 433, 485
TspGWI	ACGGA	1 cut(s)	254
Tth111I	GACNNNGTC	1 cut(s)	720
VpaK11BI	GGWCC	3 cut(s)	420, 635, 645
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.