Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

3227788 .. 3229326

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAGGCTCAGCCTGGAAAAGAACATGCTATGGACCCAAACCCTCAGTTCTCAAACCCGGATTACATGCCCTCCAACAAGCTTCAAGGAAAGGTGGCGCTGGTGACCGGAGGAGACTCCGGGATAGGAAGATCGGTGTGTCATTACTTTGCTCAGGAGGGTGCAACAGTGGCCTTCACTTATGTGAAGGGCCAGGAGGACAAGGATGCACGTGAGACTCTTGAAATGATCAAGCAGGTGAAAACTTCTGATGCCAAGGACCCTATTGCAGTTGCAGCTGATCTTGGTTTCGATGAAAATTGCAAGAGGGTTGTGGAGGAGGTGGTGAAAGCGTACAACCGCATTGATATTCTGGTTAACAATGCAGCCGAGCAGTACAAGACCGGCTCGGTGCAAGACATTGATGAGGCTCGTATTGAAAGGGTGTTCAGGACCAACATATTTGCTTACTTCTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGAAGCAACATAATATGCACAACATCAGTTGTGGCCTATAAGGGAAATCCCAAGCTGCTTGATTACACAGCAACCAAGGGCGCCATTGTGGCATTTGTGAGAGGACTGGCACTTGAGCTAGTGAACAAAGGCATCCGCGTTAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGATTCCAGCATCTTTTGATGAGGAGGAGACTGCAAAGTTTGGCTCTGAAGTGCCAATGCAGCGACCTGGGCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTGGGGTTATTGTAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

294

Amino Acids

31.95

Weight (kDa)

6.24

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	37 - 248	1.3e-11	SDR-like rossmann domain
adh_short	PF00106	43 - 239	4e-46	short chain dehydrogenase
KR	PF08659	45 - 209	1.6e-10	KR domain
adh_short_C2	PF13561	51 - 289	2.5e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	605
AccII	CGCG	1 cut(s)	663
AciI	CCGC	2 cut(s)	376, 661
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	768
AcvI	CACGTG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	2 cut(s)	371, 413
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	4 cut(s)	122, 260, 455, 511
AjnI	CCWGG	4 cut(s)	49, 228, 679, 766
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	5 cut(s)	118, 314, 580, 643, 677
AluI	AGCT	5 cut(s)	118, 314, 580, 643, 677
Alw26I	GTCTC	3 cut(s)	144, 245, 722
AoxI	GGCC	4 cut(s)	207, 226, 558, 838
ApeKI	GCWGC	5 cut(s)	311, 401, 580, 760, 772
ApoI	RAATTY	1 cut(s)	874
AspLEI	GCGC	3 cut(s)	136, 608, 790
AspS9I	GGNCC	6 cut(s)	70, 226, 295, 468, 683, 693
AsuC2I	CCSGG	2 cut(s)	95, 157
AsuHPI	GGTGA	3 cut(s)	151, 286, 373
AvaII	GGWCC	5 cut(s)	70, 295, 468, 683, 693
BanI	GGYRCC	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	5 cut(s)	323, 413, 567, 772, 784
BccI	CCATC	2 cut(s)	5, 858
BciT130I	CCWGG	4 cut(s)	51, 230, 681, 768
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	2 cut(s)	95, 157
BcoDI	GTCTC	3 cut(s)	144, 245, 722
BfaI	CTAG	1 cut(s)	644
BfoI	RGCGCY	2 cut(s)	137, 609
BfuAI	ACCTGC	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	5 cut(s)	312, 402, 581, 761, 773
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	313, 403, 582, 762, 774
Bme1390I	CCNGG	6 cut(s)	51, 95, 157, 230, 681, 768
Bme18I	GGWCC	5 cut(s)	70, 295, 468, 683, 693
BmgT120I	GGNCC	6 cut(s)	70, 226, 295, 468, 683, 693
BmiI	GGNNCC	4 cut(s)	72, 297, 607, 695
BmrFI	CCNGG	6 cut(s)	51, 95, 157, 230, 681, 768
BmsI	GCATC	4 cut(s)	232, 277, 666, 719
BpiI	GAAGAC	1 cut(s)	793
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	95, 157
BsaAI	YACGTR	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	291, 600, 767
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	2 cut(s)	419, 836
Bse1I	ACTGG	1 cut(s)	636
BseBI	CCWGG	4 cut(s)	51, 230, 681, 768
BseDI	CCNNGG	3 cut(s)	291, 600, 767
BseGI	GGATG	4 cut(s)	247, 657, 846, 850
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMII	CTCAG	3 cut(s)	59, 95, 203
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	5 cut(s)	18, 162, 368, 737, 740
BseXI	GCAGC	5 cut(s)	323, 413, 567, 772, 784
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	4 cut(s)	209, 228, 560, 840
BshNI	GGYRCC	1 cut(s)	605
BsiSI	CCGG	5 cut(s)	95, 144, 156, 420, 837
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	3 cut(s)	144, 245, 722
BsnI	GGCC	4 cut(s)	209, 228, 560, 840
Bsp143I	GATC	3 cut(s)	167, 264, 316
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	376, 661
BspANI	GGCC	4 cut(s)	209, 228, 560, 840
BspCNI	CTCAG	3 cut(s)	58, 94, 202
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	4 cut(s)	72, 297, 607, 695
BspMI	ACCTGC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	605
BsrFI	RCCGGY	2 cut(s)	419, 836
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	2 cut(s)	419, 836
BssECI	CCNNGG	3 cut(s)	291, 600, 767
BssMI	GATC	3 cut(s)	167, 264, 316
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	291, 600
Bst2UI	CCWGG	4 cut(s)	51, 230, 681, 768
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	829
BstACI	GRCGYC	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	504, 792
BstDEI	CTNAG	3 cut(s)	45, 81, 189
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	4 cut(s)	247, 657, 846, 850
BstFNI	CGCG	1 cut(s)	663
BstH2I	RGCGCY	2 cut(s)	137, 609
BstHHI	GCGC	3 cut(s)	136, 608, 790
BstKTI	GATC	3 cut(s)	170, 267, 319
BstMAI	GTCTC	3 cut(s)	144, 245, 722
BstMBI	GATC	3 cut(s)	167, 264, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	206, 311, 503, 614, 760, 769, 815
BstNI	CCWGG	4 cut(s)	51, 230, 681, 768
BstNSI	RCATGY	3 cut(s)	65, 106, 506
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	6 cut(s)	49, 93, 155, 228, 679, 766
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	5 cut(s)	323, 413, 567, 772, 784
BstV2I	GAAGAC	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	857
BsuRI	GGCC	4 cut(s)	209, 228, 560, 840
BtsCI	GGATG	4 cut(s)	247, 657, 846, 850
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	504, 792
CfoI	GCGC	3 cut(s)	136, 608, 790
Cfr10I	RCCGGY	2 cut(s)	419, 836
Cfr13I	GGNCC	6 cut(s)	70, 226, 295, 468, 683, 693
Csp6I	GTAC	2 cut(s)	370, 412
CviAII	CATG	5 cut(s)	62, 103, 493, 503, 517
CviQI	GTAC	2 cut(s)	370, 412
DdeI	CTNAG	3 cut(s)	45, 81, 189
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	3 cut(s)	169, 266, 318
DpnII	GATC	3 cut(s)	167, 264, 316
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	291, 600
Eco47I	GGWCC	5 cut(s)	70, 295, 468, 683, 693
Eco57I	CTGAAG	1 cut(s)	768
Eco72I	CACGTG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	139
EcoRII	CCWGG	4 cut(s)	49, 228, 679, 766
EcoT14I	CCWWGG	2 cut(s)	291, 600
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	291, 600
FaeI	CATG	5 cut(s)	65, 106, 496, 506, 520
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FatI	CATG	5 cut(s)	61, 102, 492, 502, 516
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	312, 402, 581, 761, 773
FokI	GGATG	4 cut(s)	254, 644, 833, 837
Fsp4HI	GCNGC	5 cut(s)	312, 402, 581, 761, 773
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	3 cut(s)	135, 607, 789
GluI	GCNGC	5 cut(s)	312, 402, 581, 761, 773
HaeII	RGCGCY	2 cut(s)	137, 609
HaeIII	GGCC	4 cut(s)	209, 228, 560, 840
HapII	CCGG	5 cut(s)	95, 144, 156, 420, 837
HhaI	GCGC	3 cut(s)	136, 608, 790
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	5 cut(s)	65, 106, 496, 506, 520
Hin6I	GCGC	3 cut(s)	134, 606, 788
HinP1I	GCGC	3 cut(s)	134, 606, 788
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	152, 253, 703
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	5 cut(s)	95, 144, 156, 420, 837
HphI	GGTGA	3 cut(s)	151, 286, 373
Hpy166II	GTNNAC	2 cut(s)	394, 649
Hpy188I	TCNGA	3 cut(s)	10, 286, 748
Hpy188III	TCNNGA	4 cut(s)	191, 257, 466, 879
Hpy8I	GTNNAC	2 cut(s)	394, 649
HpyAV	CCTTC	3 cut(s)	217, 220, 518
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	7 cut(s)	206, 311, 503, 614, 760, 769, 815
HpyF3I	CTNAG	3 cut(s)	45, 81, 189
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	5 cut(s)	65, 106, 496, 506, 520
HspAI	GCGC	3 cut(s)	134, 606, 788
KasI	GGCGCC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	167, 264, 316
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	5 cut(s)	323, 413, 567, 772, 784
LweI	GCATC	4 cut(s)	232, 277, 666, 719
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	169, 266, 318
MboI	GATC	3 cut(s)	167, 264, 316
MboII	GAAGA	4 cut(s)	177, 481, 793, 816
MluCI	AATT	2 cut(s)	334, 874
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	146, 247
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	2 cut(s)	393, 666
MslI	CAYNNNNRTG	2 cut(s)	218, 855
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	5 cut(s)	95, 144, 156, 420, 837
MspR9I	CCNGG	6 cut(s)	51, 95, 157, 230, 681, 768
MvaI	CCWGG	4 cut(s)	51, 230, 681, 768
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	7 cut(s)	206, 311, 503, 614, 760, 769, 815
NarI	GGCGCC	1 cut(s)	606
NciI	CCSGG	2 cut(s)	95, 157
NdeII	GATC	3 cut(s)	167, 264, 316
NlaIII	CATG	5 cut(s)	65, 106, 496, 506, 520
NlaIV	GGNNCC	4 cut(s)	72, 297, 607, 695
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	3 cut(s)	65, 106, 506
OliI	CACNNNNGTG	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	506
PaqCI	CACCTGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	2 cut(s)	155, 679
PkrI	GCNGC	5 cut(s)	313, 403, 582, 762, 774
PleI	GAGTC	2 cut(s)	146, 247
PluTI	GGCGCC	1 cut(s)	609
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	2 cut(s)	146, 247
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	4 cut(s)	49, 228, 679, 766
PspCI	CACGTG	1 cut(s)	248
PspEI	GGTNACC	1 cut(s)	139
PspGI	CCWGG	4 cut(s)	49, 228, 679, 766
PspN4I	GGNNCC	4 cut(s)	72, 297, 607, 695
PspPI	GGNCC	6 cut(s)	70, 226, 295, 468, 683, 693
PspPPI	RGGWCCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	371, 413
RsaNI	GTAC	2 cut(s)	370, 412
RseI	CAYNNNNRTG	2 cut(s)	218, 855
SaqAI	TTAA	2 cut(s)	393, 666
SatI	GCNGC	5 cut(s)	312, 402, 581, 761, 773
Sau3AI	GATC	3 cut(s)	167, 264, 316
Sau96I	GGNCC	6 cut(s)	70, 226, 295, 468, 683, 693
SchI	GAGTC	2 cut(s)	146, 247
ScrFI	CCNGG	6 cut(s)	51, 95, 157, 230, 681, 768
SfaNI	GCATC	4 cut(s)	232, 277, 666, 719
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	5 cut(s)	70, 295, 468, 683, 693
SmiMI	CAYNNNNRTG	2 cut(s)	218, 855
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	2 cut(s)	334, 874
SsiI	CCGC	2 cut(s)	376, 661
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	6 cut(s)	49, 93, 155, 228, 679, 766
StyI	CCWWGG	2 cut(s)	291, 600
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	334, 874
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	393, 666
Tru9I	TTAA	2 cut(s)	393, 666
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	5 cut(s)	311, 401, 580, 760, 772
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	345, 481, 533
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	5 cut(s)	70, 295, 468, 683, 693
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	3 cut(s)	65, 106, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.