AT1G55928

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008231
Physical Location & Seq
Forward (+)
20917190 .. 20918462
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55928.1

Sequence Viewer

Length: 897 bp
ATGACGACTTTATCCAAAAAAGAAACATTGAATATGAACAAGTTTGGATTGCAACTGAGGAAGACCCTGTCCAAGAAAGTTCTTCCTATTGCTCCAATACTTGGTGAAGATGAAGAAGACAACGATGTGGACAAGGAGATTTCTCGTCAAGCTTCAAAGACCAAGTCTCTTAAGAAATTTGAGGAGCAGCATAAGAAAGCCTTGGAGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGAAGCACCTCTTCCACGACTACATGAACGTCAAGAGTGCAATAAGCCTATATATAACCAGCTTATGAAGGAAAAGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAGCTTGCGAAAGAGAGAGCCAAAGAGCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACCGGTAGTTATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCGTGAACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGAAGGACTTGAGTGATTTCTACTTCAACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGAGGCTCAAGGAGCAAAGAAAAGTACCGAAGCTAGAGGAGCTAAGGGAAAAGATGAAAACAGAATCACCAGAGAGGGTAGTGTTGCCTGACTCCAGAGATATTGGATCAAGTTGTAGGATAATTGTGGAACTGCAAGAAGCAGAGCACGTAGCATCTGAGGAGAAGATGAATTCAGATGCCACAGAAGAGAGAGACTTATCAATCAAAGGGGCAGCAAAACATGAGCCGAGAGCCACTTACCAACACTGCAAAAATAGAAGAATAGTTTTGCAAGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

298

Amino Acids

35.04

Weight (kDa)

8.14

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 61 - 178 5.4e-30 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB7I CCANNNNNTGG 1 cut(s) 101
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 2 cut(s) 176, 784
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 1 cut(s) 101
AflII CTTAAG 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 3 cut(s) 31, 156, 559
AluBI AGCT 7 cut(s) 152, 319, 379, 587, 602, 646, 655
AluI AGCT 7 cut(s) 152, 319, 379, 587, 602, 646, 655
Alw21I GWGCWC 2 cut(s) 589, 762
Alw26I GTCTC 4 cut(s) 171, 337, 602, 801
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 187, 827
ApoI RAATTY 2 cut(s) 176, 784
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AsiGI ACCGGT 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 116, 672
AvaI CYCGRG 1 cut(s) 588
BanII GRGCYC 1 cut(s) 589
BbsI GAAGAC 3 cut(s) 68, 123, 216
Bbv12I GWGCWC 2 cut(s) 589, 762
BbvI GCAGC 2 cut(s) 199, 839
BcoDI GTCTC 4 cut(s) 171, 337, 602, 801
BfaI CTAG 3 cut(s) 458, 603, 647
BfrI CTTAAG 1 cut(s) 170
BisI GCNGC 2 cut(s) 188, 828
BlsI GCNGC 2 cut(s) 189, 829
BmeT110I CYCGRG 1 cut(s) 588
BmsI GCATC 2 cut(s) 776, 781
BpiI GAAGAC 3 cut(s) 68, 123, 216
BpmI CTGGAG 1 cut(s) 691
Bpu10I CCTNAGC 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 562, 605
BsaAI YACGTR 1 cut(s) 763
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 339, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 47, 495, 762
BseRI GAGGAG 3 cut(s) 197, 665, 788
BseXI GCAGC 2 cut(s) 199, 839
BshTI ACCGGT 1 cut(s) 437
BsiHKAI GWGCWC 2 cut(s) 589, 762
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 2 cut(s) 340, 438
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 4 cut(s) 171, 337, 602, 801
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 2 cut(s) 589, 762
Bsp143I GATC 3 cut(s) 418, 469, 719
BspCNI CTCAG 3 cut(s) 48, 494, 763
BspPI GGATC 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 418, 469, 719
BssT1I CCWWGG 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 273, 795
BstAFI CTTAAG 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 4 cut(s) 56, 481, 656, 771
BstKTI GATC 3 cut(s) 421, 472, 722
BstMAI GTCTC 4 cut(s) 171, 337, 602, 801
BstMBI GATC 3 cut(s) 418, 469, 719
BstMWI GCNNNNNNNGC 3 cut(s) 584, 625, 652
BstV1I GCAGC 2 cut(s) 199, 839
BstV2I GAAGAC 3 cut(s) 68, 123, 216
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 437
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 2 cut(s) 281, 836
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 4 cut(s) 56, 481, 656, 771
DpnI GATC 3 cut(s) 420, 471, 721
DpnII GATC 3 cut(s) 418, 469, 719
Eam1104I CTCTTC 2 cut(s) 273, 795
EarI CTCTTC 2 cut(s) 273, 795
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 784
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 284, 839
FalI AAGNNNNNCTT 6 cut(s) 185, 217, 252, 284, 524, 556
FatI CATG 2 cut(s) 280, 835
Fnu4HI GCNGC 2 cut(s) 188, 828
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 2 cut(s) 188, 828
FspBI CTAG 3 cut(s) 458, 603, 647
GluI GCNGC 2 cut(s) 188, 828
GsuI CTGGAG 1 cut(s) 691
HapII CCGG 2 cut(s) 340, 438
Hin1II CATG 2 cut(s) 284, 839
HindIII AAGCTT 2 cut(s) 150, 377
HinfI GANTC 2 cut(s) 677, 704
HpaII CCGG 2 cut(s) 340, 438
HphI GGTGA 2 cut(s) 116, 672
Hpy166II GTNNAC 3 cut(s) 130, 367, 500
Hpy188I TCNGA 3 cut(s) 484, 772, 790
Hpy188III TCNNGA 4 cut(s) 290, 416, 590, 708
Hpy8I GTNNAC 3 cut(s) 130, 367, 500
HpyAV CCTTC 2 cut(s) 319, 529
HpyCH4IV ACGT 3 cut(s) 286, 355, 762
HpyCH4V TGCA 5 cut(s) 52, 297, 748, 864, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 625, 652
HpyF3I CTNAG 4 cut(s) 56, 481, 656, 771
HpySE526I ACGT 3 cut(s) 286, 355, 762
Hsp92II CATG 2 cut(s) 284, 839
Kzo9I GATC 3 cut(s) 418, 469, 719
LmnI GCTCC 5 cut(s) 97, 184, 584, 625, 652
LpnPI CCDG 9 cut(s) 80, 242, 329, 353, 429, 451, 696, 714, 721
Lsp1109I GCAGC 2 cut(s) 199, 839
LweI GCATC 2 cut(s) 776, 781
MaeI CTAG 3 cut(s) 458, 603, 647
MaeII ACGT 3 cut(s) 286, 355, 762
MaeIII GTNAC 2 cut(s) 433, 523
MalI GATC 3 cut(s) 420, 471, 721
MboI GATC 3 cut(s) 418, 469, 719
MhlI GDGCHC 2 cut(s) 589, 762
MluCI AATT 3 cut(s) 176, 735, 784
MlyI GAGTC 1 cut(s) 698
MseI TTAA 2 cut(s) 171, 426
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 2 cut(s) 340, 438
MwoI GCNNNNNNNGC 3 cut(s) 584, 625, 652
NdeII GATC 3 cut(s) 418, 469, 719
NlaIII CATG 2 cut(s) 284, 839
NmeAIII GCCGAG 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 588
PfeI GAWTC 1 cut(s) 677
PflFI GACNNNGTC 2 cut(s) 67, 163
PflMI CCANNNNNTGG 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 2 cut(s) 189, 829
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
Ppu21I YACGTR 1 cut(s) 763
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 589
PsyI GACNNNGTC 2 cut(s) 67, 163
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
SacI GAGCTC 1 cut(s) 589
SaqAI TTAA 2 cut(s) 171, 426
SatI GCNGC 2 cut(s) 188, 828
Sau3AI GATC 3 cut(s) 418, 469, 719
SchI GAGTC 1 cut(s) 698
SduI GDGCHC 2 cut(s) 589, 762
SfaNI GCATC 2 cut(s) 776, 781
Sfr274I CTCGAG 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 588
SmlI CTYRAG 4 cut(s) 170, 541, 588, 620
SmoI CTYRAG 4 cut(s) 170, 541, 588, 620
Sse9I AATT 3 cut(s) 176, 735, 784
SspMI CTAG 3 cut(s) 458, 603, 647
SstI GAGCTC 1 cut(s) 589
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 3 cut(s) 289, 358, 765
TaqI TCGA 1 cut(s) 589
TasI AATT 3 cut(s) 176, 735, 784
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 171, 426
Tru9I TTAA 2 cut(s) 171, 426
TscAI CASTG 1 cut(s) 866
TseI GCWGC 2 cut(s) 187, 827
TspDTI ATGAA 7 cut(s) 50, 126, 249, 297, 338, 683, 797
TspRI CASTG 1 cut(s) 866
Tth111I GACNNNGTC 2 cut(s) 67, 163
Van91I CCANNNNNTGG 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 170
XapI RAATTY 2 cut(s) 176, 784
XhoI CTCGAG 1 cut(s) 588
XspI CTAG 3 cut(s) 458, 603, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.