Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008231

Physical Location & Seq

Genomic Coordinates Forward (+)

18472197 .. 18473414

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGACCTGGAATTGGCCAAAAAGGGTTTTGATTATGCCCGGAAAAGGAAGAAGTGGCTGTTTGTAATGGCTGCTTTGGGCTTCTCTGGTTATGGTGCTTATAGGGTTTATCACTTGCCTTCAGTATGTCAAAAAAGAAAGAGGCTTTTGAAGCTTTTAGGGGCTTTAGTTTCTGTAGCTGAAGCAGTTTCAGACTCTGCTGAGTCGATTGGAGTTGTGTCGAAAGATTTGAAGGAGTTTTTGCAATCTGATTCTGATGAAATTCCGAATAGCTTGAAGCAAGTTTCGAAAATAGCTAGGTCGGATGAGTTTTCGGGGTCTGTTGTTAAGGTCACACAAGCTGTAACCTTGGGTGTTTTGAGGGGTTATCAAGCACAGGCCAAGAGTCAGGGTCATGGTGATGATGGAGTTTCTAGTAATTCAGGATTTGTGGATCAAGTTATGGATAAGCTATTTACCGAGGCAGGGTCTGGTTTTGCATCTGTTGTTGTTGGAAGCTTTGCTAAGAATTTGGTATTAGCTTTCTTTGATGAGCAGTCTGGTGGAGGATCAAATTCGAATAGTTTTCCAAGTAAGGATCAATTTGGTATGAAGATGAATGATGTTCCAAGATGGGTGGATGTGGCTTGTAGTGAAAAGTGCAGAGACCTAATTGCTGATTGTATCCAGTTATTTGTAAGCACAGCTGTTGCGGTTTATCTTGACAAGACTATGGACATCAACACCTATGATGATATCTTCTCTGGGTTAACCAACCCCAAGCATGAAGTGAAAGTAAAAGATATGTTGTTATCAGTCTGTAATGGTGCGGTTGAAACTCTTGTTAGATCATCTCATCAAGTGTTAACAAGTTCAAAATCCAATGTGAACCATCCGAATTTGAGTTCAAGTTCTCATTTGGCTATTGATGATGGGAGAAAAGACAGTGGGTGGATCGGTCAAGTATCCTCTACTTTGGCAGTTCCAAGCAATAGAAGTTTTGTTCTTGACTTGACTGGACGGGTTACATCTGAAACAGTTAGATCCTCCTTGGATTTTTTGTTGGAGAGACTATTTGATGGGATGCGGAGACGTGTTAATTCTGCTCGTGTGGAAACTGTTGACAGGGGTGTTGAGGTTGTGAGGTATGCTGTTGCAAAGTCTTCCGTTATCGCCACTATATGTCTTTCTTTGTGTTTGCACGTAATTGATAGTCCATGGCTATTGGCGCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2040

Protein Analysis

405

Amino Acids

44.0

Weight (kDa)

8.07

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55928 AT2G27280 AT2G27285
fragaria_vesca	FvH4_1g21730 FvH4_1g21730 FvH4_1g21730
malus_domestica	MD01G1023000.v1.1 MD15G1329700.v1.1
prunus_persica	Prupe.6G178500_v2.0.a1
pyrus_communis	pycom01g05120 pycom15g29580
rosa_chinensis	RchiOBHm_Chr2g0115601
rosa_laevigata	RLG00000018196
rosa_multiflora	Rmu_co8065074.1_g000001 Rmu_ssc0000197.1_g000088
rosa_roxburghii	Rroxscaffold_2G00128070 Rroxscaffold_2G00128940
rosa_rugosa	Rorug02G0198400
rosa_samantha	Rh2AG255700 Rh2BG266500 Rh2CG261100 Rh2DG264000
rosa_wichuraiana	Rw2G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1207
AciI	CCGC	3 cut(s)	692, 809, 1066
AclWI	GGATC	5 cut(s)	441, 556, 585, 941, 1017
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	4 cut(s)	261, 508, 553, 877
AcuI	CTGAAG	2 cut(s)	105, 201
AcyI	GRCGYC	1 cut(s)	1208
AfiI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
AflIII	ACRYGT	1 cut(s)	1072
AgsI	TTSAA	6 cut(s)	151, 232, 277, 815, 855, 888
AjiI	CACGTC	1 cut(s)	1073
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	9 cut(s)	154, 179, 273, 296, 341, 451, 498, 521, 686
AluI	AGCT	9 cut(s)	154, 179, 273, 296, 341, 451, 498, 521, 686
Alw26I	GTCTC	3 cut(s)	639, 1042, 1063
AlwI	GGATC	5 cut(s)	441, 556, 585, 941, 1017
AlwNI	CAGNNNCTG	2 cut(s)	197, 470
AoxI	GGCC	2 cut(s)	15, 378
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	4 cut(s)	261, 508, 553, 877
AspLEI	GCGC	1 cut(s)	1210
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	2 cut(s)	287, 557
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	1207
BauI	CACGAG	1 cut(s)	1086
BbsI	GAAGAC	1 cut(s)	1134
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	398, 606, 879, 905, 1052
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	2 cut(s)	674, 955
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	639, 1042, 1063
BfaI	CTAG	2 cut(s)	297, 414
BfmI	CTRYAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	1211
BfuI	GTATCC	2 cut(s)	674, 955
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	8, 40
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	1209
BmrFI	CCNGG	2 cut(s)	8, 40
BmsI	GCATC	2 cut(s)	488, 1053
BpiI	GAAGAC	1 cut(s)	1134
Bpu14I	TTCGAA	2 cut(s)	287, 557
BpuMI	CCSGG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	1183
BsaHI	GRCGYC	1 cut(s)	1208
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	348, 459, 1029, 1196
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 45, 465
Bse118I	RCCGGY	1 cut(s)	1210
Bse1I	ACTGG	2 cut(s)	667, 1000
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	348, 459, 1029, 1196
BseGI	GGATG	4 cut(s)	310, 625, 871, 1068
BseLI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	667, 1000
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	661
BshFI	GGCC	2 cut(s)	17, 380
BshNI	GGYRCC	1 cut(s)	1207
BsiSI	CCGG	2 cut(s)	40, 1211
BslI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BsmAI	GTCTC	3 cut(s)	639, 1042, 1063
BsmBI	CGTCTC	1 cut(s)	1063
BsnI	GGCC	2 cut(s)	17, 380
Bso31I	GGTCTC	1 cut(s)	639
Bsp119I	TTCGAA	2 cut(s)	287, 557
Bsp143I	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	3 cut(s)	692, 809, 1066
BspANI	GGCC	2 cut(s)	17, 380
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	1209
BspPI	GGATC	5 cut(s)	441, 556, 585, 941, 1017
BspT104I	TTCGAA	2 cut(s)	287, 557
BspT107I	GGYRCC	1 cut(s)	1207
BspTNI	GGTCTC	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	1210
BsrI	ACTGG	2 cut(s)	667, 1000
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	4 cut(s)	348, 459, 1029, 1196
BssMI	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
BssNI	GRCGYC	1 cut(s)	1208
BssSI	CACGAG	1 cut(s)	1086
BssT1I	CCWWGG	3 cut(s)	348, 1029, 1196
Bst2BI	CACGAG	1 cut(s)	1086
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	3 cut(s)	926, 1018, 1099
BstACI	GRCGYC	1 cut(s)	1208
BstBAI	YACGTR	1 cut(s)	1183
BstBI	TTCGAA	2 cut(s)	287, 557
BstC8I	GCNNGC	1 cut(s)	1212
BstDEI	CTNAG	3 cut(s)	201, 504, 1215
BstDSI	CCRYGG	1 cut(s)	1196
BstF5I	GGATG	4 cut(s)	310, 625, 871, 1068
BstH2I	RGCGCY	1 cut(s)	1211
BstHHI	GCGC	1 cut(s)	1210
BstKTI	GATC	6 cut(s)	436, 551, 580, 830, 936, 1025
BstMAI	GTCTC	3 cut(s)	639, 1042, 1063
BstMBI	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 1207
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 38
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	1 cut(s)	1022
BstYI	RGATCY	1 cut(s)	1022
BsuI	GTATCC	2 cut(s)	674, 955
BsuRI	GGCC	2 cut(s)	17, 380
BtgI	CCRYGG	1 cut(s)	1196
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	4 cut(s)	310, 625, 871, 1068
BtsIMutI	CAGTG	1 cut(s)	931
Cac8I	GCNNGC	1 cut(s)	1212
CaiI	CAGNNNCTG	2 cut(s)	197, 470
CfoI	GCGC	1 cut(s)	1210
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	3 cut(s)	395, 764, 1197
DdeI	CTNAG	3 cut(s)	201, 504, 1215
DinI	GGCGCC	1 cut(s)	1209
DpnI	GATC	6 cut(s)	435, 550, 579, 829, 935, 1024
DpnII	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	348, 1029, 1196
Eco31I	GGTCTC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	105, 201
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	3 cut(s)	348, 1029, 1196
EgeI	GGCGCC	1 cut(s)	1209
EheI	GGCGCC	1 cut(s)	1209
ErhI	CCWWGG	3 cut(s)	348, 1029, 1196
Esp3I	CGTCTC	1 cut(s)	1063
FaeI	CATG	3 cut(s)	398, 767, 1200
FatI	CATG	3 cut(s)	394, 763, 1196
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	4 cut(s)	317, 632, 858, 1075
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	297, 414
GlaI	GCGC	1 cut(s)	1209
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	1211
HaeIII	GGCC	2 cut(s)	17, 380
HapII	CCGG	2 cut(s)	40, 1211
HhaI	GCGC	1 cut(s)	1210
Hin1I	GRCGYC	1 cut(s)	1208
Hin1II	CATG	3 cut(s)	398, 767, 1200
Hin6I	GCGC	1 cut(s)	1208
HinP1I	GCGC	1 cut(s)	1208
HincII	GTYRAC	3 cut(s)	750, 846, 1102
HindII	GTYRAC	3 cut(s)	750, 846, 1102
HindIII	AAGCTT	2 cut(s)	152, 496
HinfI	GANTC	4 cut(s)	194, 203, 251, 385
HpaI	GTTAAC	2 cut(s)	750, 846
HpaII	CCGG	2 cut(s)	40, 1211
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	4 cut(s)	750, 846, 868, 1102
Hpy188I	TCNGA	7 cut(s)	193, 250, 256, 267, 304, 876, 1012
Hpy188III	TCNNGA	3 cut(s)	423, 701, 986
Hpy8I	GTNNAC	4 cut(s)	750, 846, 868, 1102
HpyAV	CCTTC	2 cut(s)	129, 226
HpyCH4III	ACNGT	3 cut(s)	926, 1018, 1099
HpyCH4IV	ACGT	2 cut(s)	1072, 1182
HpyCH4V	TGCA	5 cut(s)	244, 479, 642, 1136, 1180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 1207
HpyF3I	CTNAG	3 cut(s)	201, 504, 1215
HpySE526I	ACGT	2 cut(s)	1072, 1182
Hsp92I	GRCGYC	1 cut(s)	1208
Hsp92II	CATG	3 cut(s)	398, 767, 1200
HspAI	GCGC	1 cut(s)	1208
KasI	GGCGCC	1 cut(s)	1207
KroI	GCCGGC	1 cut(s)	1210
KroNI	GCCGGC	1 cut(s)	1212
KspAI	GTTAAC	2 cut(s)	750, 846
Kzo9I	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	488, 1053
MaeI	CTAG	2 cut(s)	297, 414
MaeII	ACGT	2 cut(s)	1072, 1182
MaeIII	GTNAC	3 cut(s)	331, 343, 1003
MalI	GATC	6 cut(s)	435, 550, 579, 829, 935, 1024
MboI	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
MboII	GAAGA	4 cut(s)	61, 604, 730, 1134
MflI	RGATCY	1 cut(s)	1022
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
Mly113I	GGCGCC	1 cut(s)	1208
MlyI	GAGTC	3 cut(s)	188, 212, 394
MmeI	TCCRAC	3 cut(s)	282, 472, 1023
MnlI	CCTC	8 cut(s)	135, 354, 454, 539, 958, 1036, 1108, 1116
Mox20I	TGGCCA	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	1210
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	4 cut(s)	327, 749, 845, 1077
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	2 cut(s)	40, 1211
MspR9I	CCNGG	2 cut(s)	8, 40
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	151, 1207
NaeI	GCCGGC	1 cut(s)	1212
NarI	GGCGCC	1 cut(s)	1208
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	1196
NdeII	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
NgoMIV	GCCGGC	1 cut(s)	1210
NlaIII	CATG	3 cut(s)	398, 767, 1200
NlaIV	GGNNCC	1 cut(s)	1209
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	2 cut(s)	287, 557
PdiI	GCCGGC	1 cut(s)	1212
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	3 cut(s)	188, 211, 393
PluTI	GGCGCC	1 cut(s)	1211
PpsI	GAGTC	3 cut(s)	188, 211, 393
Ppu21I	YACGTR	1 cut(s)	1183
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	1209
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	197, 470
PsuI	RGATCY	1 cut(s)	1022
PvuII	CAGCTG	1 cut(s)	686
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	327, 749, 845, 1077
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	6 cut(s)	433, 548, 577, 827, 933, 1022
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	188, 212, 394
ScrFI	CCNGG	2 cut(s)	8, 40
SfaNI	GCATC	2 cut(s)	488, 1053
SfcI	CTRYAG	1 cut(s)	174
SfoI	GGCGCC	1 cut(s)	1209
SfuI	TTCGAA	2 cut(s)	287, 557
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	399
SsiI	CCGC	3 cut(s)	692, 809, 1066
SspDI	GGCGCC	1 cut(s)	1207
SspMI	CTAG	2 cut(s)	297, 414
StyD4I	CCNGG	2 cut(s)	6, 38
StyI	CCWWGG	3 cut(s)	348, 1029, 1196
TaaI	ACNGT	3 cut(s)	926, 1018, 1099
TaiI	ACGT	2 cut(s)	1075, 1185
TaqI	TCGA	4 cut(s)	206, 221, 287, 557
TaqII	GACCGA	1 cut(s)	926
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	327, 749, 845, 1077
Tru9I	TTAA	4 cut(s)	327, 749, 845, 1077
TscAI	CASTG	1 cut(s)	931
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	273, 605, 611, 780
TspGWI	ACGGA	1 cut(s)	1135
TspRI	CASTG	1 cut(s)	931
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	4 cut(s)	261, 508, 553, 877
XspI	CTAG	2 cut(s)	297, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.