Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8065074.1

Orthogroup ID

OG0008231

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 572

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8065074.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 235 bp

ggcctcctactctactgactggactcgccgtacaagaaggaagaagaagaatgagcaagtatgggttgaacctaaggccacagcagaagaagcagccccctaggcctcctcttcgtaaacctgttggttttggcgatgatgatgacaatgacgttgagagggaaatttctcgacatgctaccaagaacaagtcactcagggatattgaggagcagcagaggaaagcgctggagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2040

Protein Analysis

77

Amino Acids

8.9

Weight (kDa)

9.98

Isoelectric Point (pI)

86.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55928 AT2G27280 AT2G27285
fragaria_vesca	FvH4_1g21730 FvH4_1g21730 FvH4_1g21730
malus_domestica	MD01G1023000.v1.1 MD15G1329700.v1.1
prunus_persica	Prupe.6G178500_v2.0.a1
pyrus_communis	pycom01g05120 pycom15g29580
rosa_chinensis	RchiOBHm_Chr2g0115601
rosa_laevigata	RLG00000018196
rosa_multiflora	Rmu_co8065074.1_g000001 Rmu_ssc0000197.1_g000088
rosa_roxburghii	Rroxscaffold_2G00128070 Rroxscaffold_2G00128940
rosa_rugosa	Rorug02G0198400
rosa_samantha	Rh2AG255700 Rh2BG266500 Rh2CG261100 Rh2DG264000
rosa_wichuraiana	Rw2G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	69
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	2 cut(s)	76, 103
ApeKI	GCWGC	2 cut(s)	93, 213
ApoI	RAATTY	1 cut(s)	164
AspA2I	CCTAGG	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	228
AvrII	CCTAGG	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	105, 225
BceAI	ACGGC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	2 cut(s)	94, 214
BlnI	CCTAGG	1 cut(s)	100
BlsI	GCNGC	2 cut(s)	95, 215
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	98, 223
BseXI	GCAGC	2 cut(s)	105, 225
BshFI	GGCC	3 cut(s)	3, 78, 105
BsnI	GGCC	3 cut(s)	3, 78, 105
BspANI	GGCC	3 cut(s)	3, 78, 105
BspCNI	CTCAG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	73, 196
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 102
BstNSI	RCATGY	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	105, 225
Bsu36I	CCTNAGG	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	3, 78, 105
BtgZI	GCGATG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	4 cut(s)	3, 78, 96, 105
CviKI_1	RGCY	4 cut(s)	3, 78, 96, 105
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	73, 196
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	62, 176
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	94, 214
Fsp4HI	GCNGC	2 cut(s)	94, 214
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	94, 214
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	3, 78, 105
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 102
HpyF3I	CTNAG	2 cut(s)	73, 196
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	210, 231
LpnPI	CCDG	4 cut(s)	5, 134, 183, 214
Lsp1109I	GCAGC	2 cut(s)	105, 225
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	5 cut(s)	53, 56, 59, 99, 103
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	6 cut(s)	14, 116, 119, 152, 201, 212
MwoI	GCNNNNNNNGC	2 cut(s)	90, 102
NlaIII	CATG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	95, 215
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	2 cut(s)	94, 214
SchI	GAGTC	1 cut(s)	17
SetI	ASST	3 cut(s)	74, 123, 155
Sse9I	AATT	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	93, 213
Tsp45I	GTSAC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.