Rh2BG266500

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008231
Physical Location & Seq
Reverse (-)
28638789 .. 28641674
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG266500.1

Sequence Viewer

Length: 1224 bp
ATGAGAGATTTCCATCTTAAAATACGACTCTATTTTTGCCCCGTGTTTCCGAAACTGCCCTCCCGTAACGTTGTCCTACGTGGCGGGTTTAGTTGGGTCGGGTCAGTACCAGGCCCATTAGGAAAACCATATTCGAATCTGGGTGGAAATAAAAGAATAAACCTTTCTGAAATTTCAGTCTCTGGTTCTTGGTCGGAAGAAGCCTTAATCATTCAAAAAAGGCCTCCTACTCTACTGACTGGACTCGCCGTACAAGAAGGAAGAAGAAGAATGAGCAAGTATGGGTTGAACCTAAGGCCACAGCAGAAGAAGCAGCCCCCTAGGCCTCCTCTTCGTAAACCTGTTGGTTTTGGCGATGATGATGACAATGACGTTGAGAGGGAAATTTCTCGACATGCTACCAAGAACAAGTCACTCAGGGATATTGAGGAGCAGCAGAGGAAAGCGCTGGAGCAGGACCCATCGGTGTTCGACTATGATGGAGTTTATGATGATATGAAACAGAAAGCGATACAACCTCGGGCACAAGATCACCAAGAGAGAAAGTCAAGATATATTCAGCAGTTAATGAAAAAAGCAGAAGAACGAAATCGAGAGCATGAGATAGCATTTGAAAGAAAGCTTGCAAAAGAGCGAAGTCAAGAAGATCACCTGTATGCAGACAAGGATAAATTTGTCACAAAGGCTTACAAAAAGAAACTTGCAGAGCAGGCAAAATGGATGGAGGAAGACCGACTTCGTCAACTTCGGGAGGAGAAAGACGATGTTACTAAGAAGACAGATTTGAGTGAATTTTACTTCAACCTTGAAAAAAATGTTGCGTTTGGCGCGGAAGATGCCAAGTTAAGGAAAGAGAAGCAGGCTGAATTAACGAAGTTAGAGAAGCAGGCTGAAGTAAGCGAGCCAGAGAAACAGTTCGAATTAAAGAAGCTGGCAAAACTTGACGAGGGAGAAATAGCTGGAGCACCAATGCCATTGGAGTCTCCAAGGGTGAGGGAGGGGGGTGAAGGTGAAAATACAACTATGTCTGAGACTGTTGAACCGTCTGATGAGAAGCCAGCTTCAAACACATCAGCTCAGGAAAAATTATCAGCTGAACAGCCGCCAGCAGATCAACCAAAGGTTAATCATCACAAAAGAGGTGAAGATGCGGTGGCTGCAGCAAAGGAGCGGTTTCTAGCTCGAAAGAGGGCAAAAGAACAACAAAAGTACTATGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

407

Amino Acids

47.0

Weight (kDa)

9.09

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 143 - 259 1.9e-37 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1171
AccII CGCG 1 cut(s) 830
AciI CCGC 5 cut(s) 84, 830, 1103, 1151, 1171
AclI AACGTT 1 cut(s) 69
AcsI RAATTY 4 cut(s) 171, 384, 671, 791
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 3 cut(s) 108, 252, 1211
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 846
AgsI TTSAA 7 cut(s) 215, 289, 614, 802, 809, 1040, 1065
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 7 cut(s) 622, 931, 959, 1061, 1076, 1094, 1181
AluI AGCT 7 cut(s) 622, 931, 959, 1061, 1076, 1094, 1181
Alw21I GWGCWC 1 cut(s) 967
Alw26I GTCTC 3 cut(s) 184, 987, 1025
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 519
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 4 cut(s) 112, 221, 296, 323
ApeKI GCWGC 4 cut(s) 313, 433, 1157, 1160
ApoI RAATTY 4 cut(s) 171, 384, 671, 791
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
Asp700I GAANNNNTTC 1 cut(s) 914
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 2 cut(s) 448, 830
AspS9I GGNCC 2 cut(s) 113, 457
AsuHPI GGTGA 6 cut(s) 524, 641, 1003, 1016, 1022, 1154
AsuII TTCGAA 2 cut(s) 134, 918
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 1 cut(s) 457
AvrII CCTAGG 1 cut(s) 320
AxyI CCTNAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 735, 782
Bbv12I GWGCWC 1 cut(s) 967
BbvI GCAGC 4 cut(s) 325, 445, 1144, 1172
BccI CCATC 4 cut(s) 21, 469, 473, 715
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 184, 987, 1025
BfaI CTAG 2 cut(s) 321, 1178
BfmI CTRYAG 1 cut(s) 1158
BfoI RGCGCY 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 322
BisI GCNGC 5 cut(s) 314, 434, 1103, 1158, 1161
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 5 cut(s) 315, 435, 1104, 1159, 1162
BmcAI AGTACT 1 cut(s) 1211
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 113, 457
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 826, 1138
BpiI GAAGAC 2 cut(s) 735, 782
BpmI CTGGAG 2 cut(s) 470, 981
Bpu10I CCTNAGC 1 cut(s) 1077
Bpu14I TTCGAA 2 cut(s) 134, 918
BsaAI YACGTR 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 3 cut(s) 320, 518, 986
Bsc4I CCNNNNNNNGG 1 cut(s) 846
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 320, 518, 986
BseGI GGATG 1 cut(s) 726
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 430, 1020, 1091
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 3 cut(s) 318, 443, 767
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 4 cut(s) 325, 445, 1144, 1172
Bsh1236I CGCG 1 cut(s) 830
BshFI GGCC 4 cut(s) 114, 223, 298, 325
BsiHKAI GWGCWC 1 cut(s) 967
BsiHKCI CYCGRG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 846
BsmAI GTCTC 3 cut(s) 184, 987, 1025
BsnI GGCC 4 cut(s) 114, 223, 298, 325
BsoBI CYCGRG 1 cut(s) 519
Bsp119I TTCGAA 2 cut(s) 134, 918
Bsp1286I GDGCHC 2 cut(s) 526, 967
Bsp143I GATC 3 cut(s) 529, 646, 1111
BspACI CCGC 5 cut(s) 84, 830, 1103, 1151, 1171
BspANI GGCC 4 cut(s) 114, 223, 298, 325
BspCNI CTCAG 3 cut(s) 429, 1021, 1090
BspFNI CGCG 1 cut(s) 830
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 1 cut(s) 1162
BspT104I TTCGAA 2 cut(s) 134, 918
BsrBI CCGCTC 1 cut(s) 1171
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 320, 518, 986
BssMI GATC 3 cut(s) 529, 646, 1111
BssT1I CCWWGG 2 cut(s) 320, 986
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 915, 1036, 1044
Bst6I CTCTTC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 80
BstBI TTCGAA 2 cut(s) 134, 918
BstC8I GCNNGC 8 cut(s) 624, 711, 861, 888, 902, 933, 1059, 1107
BstDEI CTNAG 5 cut(s) 293, 416, 771, 1029, 1077
BstF5I GGATG 1 cut(s) 726
BstFNI CGCG 1 cut(s) 830
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 2 cut(s) 448, 830
BstKTI GATC 3 cut(s) 532, 649, 1114
BstMAI GTCTC 3 cut(s) 184, 987, 1025
BstMBI GATC 3 cut(s) 529, 646, 1111
BstMWI GCNNNNNNNGC 6 cut(s) 310, 322, 710, 827, 836, 1157
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 1 cut(s) 830
BstV1I GCAGC 4 cut(s) 325, 445, 1144, 1172
BstV2I GAAGAC 2 cut(s) 735, 782
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 4 cut(s) 114, 223, 298, 325
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 726
Cac8I GCNNGC 8 cut(s) 624, 711, 861, 888, 902, 933, 1059, 1107
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 448, 830
Cfr13I GGNCC 2 cut(s) 113, 457
Csp6I GTAC 3 cut(s) 107, 251, 1210
CviAII CATG 2 cut(s) 395, 599
CviQI GTAC 3 cut(s) 107, 251, 1210
DdeI CTNAG 5 cut(s) 293, 416, 771, 1029, 1077
DpnI GATC 3 cut(s) 531, 648, 1113
DpnII GATC 3 cut(s) 529, 646, 1111
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 320, 986
Eco147I AGGCCT 2 cut(s) 223, 325
Eco47I GGWCC 1 cut(s) 457
Eco47III AGCGCT 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 320, 986
ErhI CCWWGG 2 cut(s) 320, 986
FaeI CATG 2 cut(s) 398, 602
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 2 cut(s) 394, 598
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 5 cut(s) 314, 434, 1103, 1158, 1161
FokI GGATG 1 cut(s) 733
Fsp4HI GCNGC 5 cut(s) 314, 434, 1103, 1158, 1161
FspBI CTAG 2 cut(s) 321, 1178
GlaI GCGC 2 cut(s) 447, 829
GluI GCNGC 5 cut(s) 314, 434, 1103, 1158, 1161
GsuI CTGGAG 2 cut(s) 470, 981
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 4 cut(s) 114, 223, 298, 325
HhaI GCGC 2 cut(s) 448, 830
Hin1II CATG 2 cut(s) 398, 602
Hin6I GCGC 2 cut(s) 446, 828
HinP1I GCGC 2 cut(s) 446, 828
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 27, 136, 243, 980
HphI GGTGA 6 cut(s) 524, 641, 1003, 1016, 1022, 1154
Hpy166II GTNNAC 2 cut(s) 338, 743
Hpy188I TCNGA 5 cut(s) 51, 169, 196, 1030, 1048
Hpy188III TCNNGA 6 cut(s) 390, 549, 593, 641, 749, 1079
Hpy8I GTNNAC 2 cut(s) 338, 743
HpyAV CCTTC 2 cut(s) 251, 1001
HpyCH4III ACNGT 3 cut(s) 915, 1036, 1044
HpyCH4IV ACGT 3 cut(s) 69, 79, 372
HpyCH4V TGCA 4 cut(s) 626, 659, 704, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 310, 322, 710, 827, 836, 1157
HpyF3I CTNAG 5 cut(s) 293, 416, 771, 1029, 1077
HpySE526I ACGT 3 cut(s) 69, 79, 372
Hsp92II CATG 2 cut(s) 398, 602
HspAI GCGC 2 cut(s) 446, 828
Kzo9I GATC 3 cut(s) 529, 646, 1111
LmnI GCTCC 4 cut(s) 430, 451, 962, 1168
Lsp1109I GCAGC 4 cut(s) 325, 445, 1144, 1172
LweI GCATC 2 cut(s) 826, 1138
MaeI CTAG 2 cut(s) 321, 1178
MaeII ACGT 3 cut(s) 69, 79, 372
MaeIII GTNAC 4 cut(s) 65, 411, 676, 766
MalI GATC 3 cut(s) 531, 648, 1113
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 3 cut(s) 529, 646, 1111
MhlI GDGCHC 2 cut(s) 526, 967
MluCI AATT 7 cut(s) 171, 384, 671, 791, 866, 920, 1085
MlyI GAGTC 3 cut(s) 21, 237, 989
MmeI TCCRAC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 7 cut(s) 18, 206, 566, 845, 869, 923, 1125
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 1094
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 830
MwoI GCNNNNNNNGC 6 cut(s) 310, 322, 710, 827, 836, 1157
NdeII GATC 3 cut(s) 529, 646, 1111
NlaIII CATG 2 cut(s) 398, 602
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 2 cut(s) 411, 676
NspI RCATGY 1 cut(s) 398
NspV TTCGAA 2 cut(s) 134, 918
PceI AGGCCT 2 cut(s) 223, 325
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 136
PflFI GACNNNGTC 1 cut(s) 738
PkrI GCNGC 5 cut(s) 315, 435, 1104, 1159, 1162
PleI GAGTC 3 cut(s) 21, 237, 988
PpsI GAGTC 3 cut(s) 21, 237, 988
Ppu21I YACGTR 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 2 cut(s) 113, 457
PspPPI RGGWCCY 1 cut(s) 457
PstI CTGCAG 1 cut(s) 1162
PstNI CAGNNNCTG 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 108, 252, 1211
RsaNI GTAC 3 cut(s) 107, 251, 1210
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 7 cut(s) 18, 206, 566, 845, 869, 923, 1125
SatI GCNGC 5 cut(s) 314, 434, 1103, 1158, 1161
Sau3AI GATC 3 cut(s) 529, 646, 1111
Sau96I GGNCC 2 cut(s) 113, 457
ScaI AGTACT 1 cut(s) 1211
SchI GAGTC 3 cut(s) 21, 237, 989
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 526, 967
SfaNI GCATC 2 cut(s) 826, 1138
SfcI CTRYAG 1 cut(s) 1158
SfuI TTCGAA 2 cut(s) 134, 918
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 654
Sse9I AATT 7 cut(s) 171, 384, 671, 791, 866, 920, 1085
SseBI AGGCCT 2 cut(s) 223, 325
SsiI CCGC 5 cut(s) 84, 830, 1103, 1151, 1171
SspMI CTAG 2 cut(s) 321, 1178
StuI AGGCCT 2 cut(s) 223, 325
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 2 cut(s) 320, 986
TaaI ACNGT 3 cut(s) 915, 1036, 1044
TaiI ACGT 3 cut(s) 72, 82, 375
TaqI TCGA 6 cut(s) 134, 391, 471, 592, 918, 1183
TaqII GACCGA 1 cut(s) 747
TasI AATT 7 cut(s) 171, 384, 671, 791, 866, 920, 1085
TatI WGTACW 1 cut(s) 1209
TauI GCSGC 1 cut(s) 1105
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 7 cut(s) 18, 206, 566, 845, 869, 923, 1125
Tru9I TTAA 7 cut(s) 18, 206, 566, 845, 869, 923, 1125
TseFI GTSAC 2 cut(s) 411, 676
TseI GCWGC 4 cut(s) 313, 433, 1157, 1160
Tsp45I GTSAC 2 cut(s) 411, 676
TspDTI ATGAA 2 cut(s) 512, 584
Tth111I GACNNNGTC 1 cut(s) 738
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 4 cut(s) 171, 384, 671, 791
XceI RCATGY 1 cut(s) 398
XmaJI CCTAGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 2 cut(s) 321, 1178
ZrmI AGTACT 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.