Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000197.1

Orthogroup ID

OG0008231

Physical Location & Seq

Genomic Coordinates Forward (+)

377622 .. 378626

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000197.1_g000088.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcttgtgtattggaacttggatgcagggcctcctactctactgactggactcgccgtacaagaaggaagaagaagaatgagcaagtatgggttgaacctaaggccacagcagaagaagcagccccctaggcctcctcttcgtaaacctgttggttttggcgatgatgatgacaatgacgttgagagggaaatttctcgacatgctaccaagaacaagtcactcagggatattgaggagcagcagaggaaagcgctggagcaagacccatcagtgttcgactatgatggagtttatgatgatatgaaacagaaagcgatacaacctcgggcacaagatcaccaagagagaaagtcaagatatattcagcagttaatgaaaaaagcagaagaacgaaatcgagagcatgagatagcatttgaaagaaagcttgcaaaagagcgaagtcaagaagatcacctgtatgcagacaaggataaatttgtcacaaaggcttacaaaaagaaacttgcagagcaggcaaaatggatggaggaagaccgacttcgtcagcttcgggaggagaaagacgatgttactaagaagacagatttgagtgaattttacttcaaccttgaaaaaaatgttgcgtttggtgcggaagatgccaagttaaggaaagagaagcaggctgaagtaagcgagccagagaaacagttcgaattaaagaagctggcaaaacttgacgagggagaaatagctggagcaccaatgccattggagtctccaagggtgagggaggggggtgaaggtgaaaatacaactatgtctgagactgttgaaccgtctgatgagaagccagcttcaaacacatcagctcaggaaaaattgtcagctgaacagccgccagcagatcaaccaaaggttaatcatcacaaaagaggtgaagatgcggtggctgcagcaaaggagcggtttctagctcgaaagagggcaaaagaacaacaaaagtactatgaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2040

Protein Analysis

334

Amino Acids

38.84

Weight (kDa)

7.06

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55928 AT2G27280 AT2G27285
fragaria_vesca	FvH4_1g21730 FvH4_1g21730 FvH4_1g21730
malus_domestica	MD01G1023000.v1.1 MD15G1329700.v1.1
prunus_persica	Prupe.6G178500_v2.0.a1
pyrus_communis	pycom01g05120 pycom15g29580
rosa_chinensis	RchiOBHm_Chr2g0115601
rosa_laevigata	RLG00000018196
rosa_multiflora	Rmu_co8065074.1_g000001 Rmu_ssc0000197.1_g000088
rosa_roxburghii	Rroxscaffold_2G00128070 Rroxscaffold_2G00128940
rosa_rugosa	Rorug02G0198400
rosa_samantha	Rh2AG255700 Rh2BG266500 Rh2CG261100 Rh2DG264000
rosa_wichuraiana	Rw2G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	952
AciI	CCGC	4 cut(s)	638, 884, 932, 952
AcsI	RAATTY	3 cut(s)	192, 479, 599
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	60, 992
AfeI	AGCGCT	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	6 cut(s)	97, 422, 610, 617, 821, 846
AluBI	AGCT	8 cut(s)	430, 553, 712, 740, 842, 857, 875, 962
AluI	AGCT	8 cut(s)	430, 553, 712, 740, 842, 857, 875, 962
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	768, 806
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	255
AoxI	GGCC	3 cut(s)	29, 104, 131
ApeKI	GCWGC	4 cut(s)	121, 241, 938, 941
ApoI	RAATTY	3 cut(s)	192, 479, 599
Asp700I	GAANNNNTTC	1 cut(s)	695
AspA2I	CCTAGG	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	6 cut(s)	332, 449, 784, 797, 803, 935
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	1 cut(s)	327
AvrII	CCTAGG	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	543, 590
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	133, 253, 925, 953
BccI	CCATC	3 cut(s)	277, 281, 523
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	768, 806
BfaI	CTAG	2 cut(s)	129, 959
BfmI	CTRYAG	1 cut(s)	939
BfoI	RGCGCY	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	130
BisI	GCNGC	5 cut(s)	122, 242, 884, 939, 942
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	123, 243, 885, 940, 943
BmcAI	AGTACT	1 cut(s)	992
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	29
BmsI	GCATC	3 cut(s)	13, 634, 919
BpiI	GAAGAC	2 cut(s)	543, 590
BpmI	CTGGAG	2 cut(s)	278, 762
Bpu10I	CCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	699
BsaJI	CCNNGG	3 cut(s)	128, 326, 767
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	128, 326, 767
BseGI	GGATG	2 cut(s)	28, 534
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMII	CTCAG	3 cut(s)	238, 801, 872
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	3 cut(s)	126, 251, 575
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	133, 253, 925, 953
BshFI	GGCC	3 cut(s)	31, 106, 133
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	2 cut(s)	768, 806
BsnI	GGCC	3 cut(s)	31, 106, 133
BsoBI	CYCGRG	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	2 cut(s)	334, 748
Bsp143I	GATC	3 cut(s)	337, 454, 892
BspACI	CCGC	4 cut(s)	638, 884, 932, 952
BspANI	GGCC	3 cut(s)	31, 106, 133
BspCNI	CTCAG	3 cut(s)	237, 802, 871
BspMAI	CTGCAG	1 cut(s)	943
BspT104I	TTCGAA	1 cut(s)	699
BsrBI	CCGCTC	1 cut(s)	952
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	128, 326, 767
BssMI	GATC	3 cut(s)	337, 454, 892
BssT1I	CCWWGG	2 cut(s)	128, 767
Bst4CI	ACNGT	3 cut(s)	696, 817, 825
Bst6I	CTCTTC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	7 cut(s)	432, 519, 669, 683, 714, 840, 888
BstDEI	CTNAG	5 cut(s)	101, 224, 579, 810, 858
BstF5I	GGATG	2 cut(s)	28, 534
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	340, 457, 895
BstMAI	GTCTC	2 cut(s)	768, 806
BstMBI	GATC	3 cut(s)	337, 454, 892
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 130, 518, 635, 644, 938
BstNSI	RCATGY	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	133, 253, 925, 953
BstV2I	GAAGAC	2 cut(s)	543, 590
Bsu36I	CCTNAGG	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	31, 106, 133
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	28, 534
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	7 cut(s)	432, 519, 669, 683, 714, 840, 888
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	59, 991
CviAII	CATG	2 cut(s)	203, 407
CviQI	GTAC	2 cut(s)	59, 991
DdeI	CTNAG	5 cut(s)	101, 224, 579, 810, 858
DpnI	GATC	3 cut(s)	339, 456, 894
DpnII	GATC	3 cut(s)	337, 454, 892
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	128, 767
Eco147I	AGGCCT	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	693
Eco81I	CCTNAGG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	128, 767
ErhI	CCWWGG	2 cut(s)	128, 767
FaeI	CATG	2 cut(s)	206, 410
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	2 cut(s)	202, 406
Fnu4HI	GCNGC	5 cut(s)	122, 242, 884, 939, 942
FokI	GGATG	2 cut(s)	35, 541
Fsp4HI	GCNGC	5 cut(s)	122, 242, 884, 939, 942
FspBI	CTAG	2 cut(s)	129, 959
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	5 cut(s)	122, 242, 884, 939, 942
GsuI	CTGGAG	2 cut(s)	278, 762
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	31, 106, 133
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	206, 410
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	51, 761
HphI	GGTGA	6 cut(s)	332, 449, 784, 797, 803, 935
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	811, 829
Hpy188III	TCNNGA	6 cut(s)	198, 357, 401, 449, 557, 860
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	59, 782
HpyCH4III	ACNGT	3 cut(s)	696, 817, 825
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	26, 434, 467, 512, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 130, 518, 635, 644, 938
HpyF3I	CTNAG	5 cut(s)	101, 224, 579, 810, 858
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	206, 410
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	337, 454, 892
LmnI	GCTCC	4 cut(s)	238, 259, 743, 949
Lsp1109I	GCAGC	4 cut(s)	133, 253, 925, 953
LweI	GCATC	3 cut(s)	13, 634, 919
MaeI	CTAG	2 cut(s)	129, 959
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	219, 484, 574
MalI	GATC	3 cut(s)	339, 456, 894
MbiI	CCGCTC	1 cut(s)	952
MboI	GATC	3 cut(s)	337, 454, 892
MhlI	GDGCHC	2 cut(s)	334, 748
MluCI	AATT	5 cut(s)	192, 479, 599, 701, 866
MlyI	GAGTC	2 cut(s)	45, 770
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	4 cut(s)	374, 653, 704, 906
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	875
MwoI	GCNNNNNNNGC	6 cut(s)	118, 130, 518, 635, 644, 938
NdeII	GATC	3 cut(s)	337, 454, 892
NlaIII	CATG	2 cut(s)	206, 410
NmuCI	GTSAC	2 cut(s)	219, 484
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	695
PflFI	GACNNNGTC	1 cut(s)	546
PkrI	GCNGC	5 cut(s)	123, 243, 885, 940, 943
PleI	GAGTC	2 cut(s)	45, 769
PpsI	GAGTC	2 cut(s)	45, 769
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	943
PsyI	GACNNNGTC	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	60, 992
RsaNI	GTAC	2 cut(s)	59, 991
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	4 cut(s)	374, 653, 704, 906
SatI	GCNGC	5 cut(s)	122, 242, 884, 939, 942
Sau3AI	GATC	3 cut(s)	337, 454, 892
Sau96I	GGNCC	1 cut(s)	29
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	2 cut(s)	45, 770
SduI	GDGCHC	2 cut(s)	334, 748
SfaNI	GCATC	3 cut(s)	13, 634, 919
SfcI	CTRYAG	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	5 cut(s)	192, 479, 599, 701, 866
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	4 cut(s)	638, 884, 932, 952
SspMI	CTAG	2 cut(s)	129, 959
StuI	AGGCCT	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	128, 767
TaaI	ACNGT	3 cut(s)	696, 817, 825
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	199, 279, 400, 699, 964
TaqII	GACCGA	1 cut(s)	555
TasI	AATT	5 cut(s)	192, 479, 599, 701, 866
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	1 cut(s)	886
Tru1I	TTAA	4 cut(s)	374, 653, 704, 906
Tru9I	TTAA	4 cut(s)	374, 653, 704, 906
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	219, 484
TseI	GCWGC	4 cut(s)	121, 241, 938, 941
Tsp45I	GTSAC	2 cut(s)	219, 484
TspDTI	ATGAA	2 cut(s)	320, 392
TspRI	CASTG	1 cut(s)	279
Tth111I	GACNNNGTC	1 cut(s)	546
XapI	RAATTY	3 cut(s)	192, 479, 599
XceI	RCATGY	1 cut(s)	206
XmaJI	CCTAGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	2 cut(s)	129, 959
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.