Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008231

Physical Location & Seq

Genomic Coordinates Forward (+)

18343846 .. 18345910

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGTAGGTATGGGTTGAACCTTAGGCCGCAGCAGAAGAAGCAGCCAACAAGGCCTCCTCTCCCTAAACCTCTCGGTTTTGGCGATGATGATGACAATGACGTTGAGAAAGAAATTTCTCGCCATGCTTCCAAGAACAAGTCTCTCAAGGATATTGAGGAGCAGCAGAGGAAGGCGCTGGAGCAGGACCCATCGGTGTTCGACTACGATGGAGTTTATGACGAGATGAAACAGAAAGCTATCCAACCTCGTGCTCAAGATCGTGAAGAGAGAAAGCCAAGATATATTCAGTATTTAATGAAAAAAGCAGAAGAACGAAACCGAGAGCATGAAATAGTATATGAGAGAAAACTTGCTAAAGAGAGAACCCAAGAGGATCACCTCTATGCAGACAAGGACAAATTTGTTACAAGTGCTTACAAAAGGAAACTTGCAGAGCAGGCAAAATGGATGGAGGAAGAACGACTGCGTCAACTTCGTGAGGAGAAAGATGATGTTACCAAGAAGAAAGACTTGACTGATTTTTACTTCAACCTTGGAAAAAATGTTGCTTTTGGGGCAGAAGATGCCAAGTCAAGGAAGCTAGCGAAGCAGGCTGAATTAAGCAAGCTAGAGAAACATGAAGACAGACCAATTGCTATAGCATCGGAGCCATTGGAGTCTGACGGTTTGAAAGAGGGGCAGCTAGAGAAGCAGGTCAAAATGGACAAGCCAGAGAAACATGAAGACAGAGCAATTGCTTCAGCATCGGAGCTACTAGATTCTCCAGAGGTGATAGAGGGGCATCAAGAGGAAACTTTAACTATTTCTAAAAGTAGTGTTGAGCCCTCTGATGAAAAGCAAGCTTCAAACACGTTGGCACAGGACCACTCGTCAGTTGAACAGCCACCAGAAAACCAACCAAAGAGTAACCATCATAAAAGAAGTGAAGATGCCCTAACTGCAGCGAAAGAACGCTATCTGGCAAGGAAAAGAGCTAAAGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2040

Protein Analysis

330

Amino Acids

38.32

Weight (kDa)

6.23

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55928 AT2G27280 AT2G27285
fragaria_vesca	FvH4_1g21730 FvH4_1g21730 FvH4_1g21730
malus_domestica	MD01G1023000.v1.1 MD15G1329700.v1.1
prunus_persica	Prupe.6G178500_v2.0.a1
pyrus_communis	pycom01g05120 pycom15g29580
rosa_chinensis	RchiOBHm_Chr2g0115601
rosa_laevigata	RLG00000018196
rosa_multiflora	Rmu_co8065074.1_g000001 Rmu_ssc0000197.1_g000088
rosa_roxburghii	Rroxscaffold_2G00128070 Rroxscaffold_2G00128940
rosa_rugosa	Rorug02G0198400
rosa_samantha	Rh2AG255700 Rh2BG266500 Rh2CG261100 Rh2DG264000
rosa_wichuraiana	Rw2G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	114, 401
AcuI	CTGAAG	1 cut(s)	726
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	5 cut(s)	19, 532, 673, 849, 881
AhdI	GACNNNNNGTC	1 cut(s)	871
AluBI	AGCT	7 cut(s)	239, 583, 610, 685, 754, 845, 977
AluI	AGCT	7 cut(s)	239, 583, 610, 685, 754, 845, 977
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	2 cut(s)	26, 53
ApeKI	GCWGC	5 cut(s)	31, 43, 163, 682, 944
ApoI	RAATTY	2 cut(s)	114, 401
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	187, 865
AsuHPI	GGTGA	2 cut(s)	371, 784
AsuNHI	GCTAGC	1 cut(s)	583
AvaII	GGWCC	2 cut(s)	187, 865
AxyI	CCTNAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	630, 732
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	5 cut(s)	43, 55, 175, 694, 956
BccI	CCATC	4 cut(s)	199, 203, 445, 921
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	4 cut(s)	584, 611, 686, 758
BfmI	CTRYAG	2 cut(s)	639, 942
BfoI	RGCGCY	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	6 cut(s)	29, 32, 44, 164, 683, 945
BlsI	GCNGC	6 cut(s)	30, 33, 45, 165, 684, 946
Bme18I	GGWCC	2 cut(s)	187, 865
BmeRI	GACNNNNNGTC	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	187, 865
BmiI	GGNNCC	2 cut(s)	189, 651
BmsI	GCATC	5 cut(s)	556, 653, 755, 793, 922
BmtI	GCTAGC	1 cut(s)	587
BpiI	GAAGAC	2 cut(s)	630, 732
BpmI	CTGGAG	2 cut(s)	200, 750
BpuEI	CTTGAG	2 cut(s)	131, 240
BsaJI	CCNNGG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse21I	CCTNAGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseRI	GAGGAG	3 cut(s)	48, 173, 497
BseXI	GCAGC	5 cut(s)	43, 55, 175, 694, 956
BshFI	GGCC	2 cut(s)	28, 55
BsiHKAI	GWGCWC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	28, 55
Bsp1286I	GDGCHC	2 cut(s)	256, 828
Bsp143I	GATC	2 cut(s)	259, 376
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	28, 55
BspLI	GGNNCC	2 cut(s)	189, 651
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	1 cut(s)	685
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	259, 376
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	668, 987
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	5 cut(s)	441, 585, 594, 608, 843
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	262, 379
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	259, 376
BstMWI	GCNNNNNNNGC	9 cut(s)	40, 52, 440, 557, 566, 589, 593, 691, 941
BstSFI	CTRYAG	2 cut(s)	639, 942
BstV1I	GCAGC	5 cut(s)	43, 55, 175, 694, 956
BstV2I	GAAGAC	2 cut(s)	630, 732
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	28, 55
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	5 cut(s)	441, 585, 594, 608, 843
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	187, 865
CseI	GACGC	1 cut(s)	458
CviAII	CATG	4 cut(s)	125, 329, 620, 722
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	261, 378
DpnII	GATC	2 cut(s)	259, 376
DriI	GACNNNNNGTC	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	871
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	828
Eco47I	GGWCC	2 cut(s)	187, 865
Eco57I	CTGAAG	1 cut(s)	726
Eco81I	CCTNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	4 cut(s)	128, 332, 623, 725
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FatI	CATG	4 cut(s)	124, 328, 619, 721
Fnu4HI	GCNGC	6 cut(s)	29, 32, 44, 164, 683, 945
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	6 cut(s)	29, 32, 44, 164, 683, 945
FspBI	CTAG	4 cut(s)	584, 611, 686, 758
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	6 cut(s)	29, 32, 44, 164, 683, 945
GsuI	CTGGAG	2 cut(s)	200, 750
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	28, 55
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	128, 332, 623, 725
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	473
HindII	GTYRAC	1 cut(s)	473
HindIII	AAGCTT	1 cut(s)	843
HinfI	GANTC	2 cut(s)	659, 761
HphI	GGTGA	2 cut(s)	371, 784
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	4 cut(s)	649, 664, 751, 832
Hpy188III	TCNNGA	5 cut(s)	257, 263, 479, 767, 788
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	668, 987
HpyCH4IV	ACGT	2 cut(s)	102, 854
HpyCH4V	TGCA	3 cut(s)	389, 434, 944
HpyF10VI	GCNNNNNNNGC	9 cut(s)	40, 52, 440, 557, 566, 589, 593, 691, 941
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	2 cut(s)	102, 854
Hsp92II	CATG	4 cut(s)	128, 332, 623, 725
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	259, 376
LmnI	GCTCC	4 cut(s)	160, 181, 649, 751
Lsp1109I	GCAGC	5 cut(s)	43, 55, 175, 694, 956
LweI	GCATC	5 cut(s)	556, 653, 755, 793, 922
MaeI	CTAG	4 cut(s)	584, 611, 686, 758
MaeII	ACGT	2 cut(s)	102, 854
MaeIII	GTNAC	3 cut(s)	406, 496, 908
MalI	GATC	2 cut(s)	261, 378
MboI	GATC	2 cut(s)	259, 376
MboII	GAAGA	9 cut(s)	49, 278, 323, 470, 517, 575, 635, 737, 941
MfeI	CAATTG	2 cut(s)	633, 735
MhlI	GDGCHC	2 cut(s)	256, 828
MluCI	AATT	5 cut(s)	114, 401, 599, 633, 735
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	268
MseI	TTAA	3 cut(s)	296, 602, 800
MslI	CAYNNNNRTG	1 cut(s)	384
MunI	CAATTG	2 cut(s)	633, 735
MwoI	GCNNNNNNNGC	9 cut(s)	40, 52, 440, 557, 566, 589, 593, 691, 941
NdeII	GATC	2 cut(s)	259, 376
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	4 cut(s)	128, 332, 623, 725
NlaIV	GGNNCC	2 cut(s)	189, 651
PceI	AGGCCT	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	468
PkrI	GCNGC	6 cut(s)	30, 33, 45, 165, 684, 946
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	189, 651
PspPI	GGNCC	2 cut(s)	187, 865
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	296, 602, 800
SatI	GCNGC	6 cut(s)	29, 32, 44, 164, 683, 945
Sau3AI	GATC	2 cut(s)	259, 376
Sau96I	GGNCC	2 cut(s)	187, 865
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	2 cut(s)	256, 828
SfaNI	GCATC	5 cut(s)	556, 653, 755, 793, 922
SfcI	CTRYAG	2 cut(s)	639, 942
SinI	GGWCC	2 cut(s)	187, 865
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	146, 255
SmoI	CTYRAG	2 cut(s)	146, 255
Sse9I	AATT	5 cut(s)	114, 401, 599, 633, 735
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	4 cut(s)	584, 611, 686, 758
StuI	AGGCCT	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	668, 987
TaiI	ACGT	2 cut(s)	105, 857
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	114, 401, 599, 633, 735
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	296, 602, 800
Tru9I	TTAA	3 cut(s)	296, 602, 800
TseI	GCWGC	5 cut(s)	31, 43, 163, 682, 944
TspDTI	ATGAA	6 cut(s)	242, 314, 345, 636, 738, 849
Tth111I	GACNNNGTC	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	187, 865
XapI	RAATTY	2 cut(s)	114, 401
XspI	CTAG	4 cut(s)	584, 611, 686, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.