Rroxscaffold_2G00128940

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008231
Physical Location & Seq
Forward (+)
64703825 .. 64706869
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128940.1

Sequence Viewer

Length: 1023 bp
ATGCCGGGCTTTCGCAGCGTCGTCGAGGAAGGAATCAAAAGGCCCACAGAAAAAGGAAGAGAAAAAAGAATGAGCAAGTATGGGTTGAACCTAAGGCCACAGCAGAAGAAGCAGCCCCCTAGGCCTCCTCTTCGTAAACCTGTTGGTTTTGGCGATGATGATGACAATGACGTTGAGAGGGAAATTTCTCGACATGCTACCAAGAACAAGTCACTCAGGGATATTGAGGAGCAGCAGAGGAAAGCGCTGGAGCAGGACCCATCGGTGTTCGACTATGATGGAGTTTATGATGATATGAAACAGAAAGCGATACAACCTCGGGCACAAGATCACCAAGAGAGAAAGTCAAGATATATTCAGCAGTTAATGAAAAAAGCAGAAGAACGAAATCGAGAGCATGAGATAGCATTTGAAAGAAAGCTTGCAAAAGAGCGAAGTCAAGAAGATCACCTGTATGCAGACAAGGATAAATTTGTCACAAAGGCTTACAAAAAGAAACTTGCAGAGCAGGCAAAATGGATGGAGGAAGACCGACTTCGTCAACTTCGGGAGGAGAAAGACGATGTTACTAAGAAGACAGATTTGAGTGAATTTTACTTCAACCTTGAAAAAAATGTTGCGTTTGGTGCAGAAGATGCCAAGTTAAGGAAAGAGAAGCAGGCTGAATCAACGAAGCTAGAGAAGCAGGCTGAAGTAAGCGAGCCAGAGAAACAGGTCGAATTAAAGAAGCTGGCAAAACTTGACGAGGGAGAAATAGCTGGAGCACCAATGCCATTGGAGTCTCCAAGGGTGAGGGAGGGGGATGAAGGTCAAAATACAACTATGTCTGAGACTATTGAACCGTCTGACGAGAAGTCAGCTTCAAACACATCAGCTCAGGAAAAATTGTCAGCTGAACAGCCGCCAGCAGATCAACCAAAGGTTAATCATCACAAAAGAGGTGAAGATGCGGTGGCTGCAGCAAAGGAGCGGTTTCTAGCTCGAAAGAGGGCAAAAGAACAACAAAAGTACTATGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

340

Amino Acids

39.62

Weight (kDa)

8.31

Isoelectric Point (pI)

63.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 76 - 192 1.3e-37 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 970
AciI CCGC 3 cut(s) 902, 950, 970
AcsI RAATTY 3 cut(s) 183, 470, 590
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 1 cut(s) 1010
AfeI AGCGCT 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 645
AgsI TTSAA 6 cut(s) 88, 413, 601, 608, 839, 864
AhdI GACNNNNNGTC 1 cut(s) 853
AluBI AGCT 8 cut(s) 421, 676, 730, 758, 860, 875, 893, 980
AluI AGCT 8 cut(s) 421, 676, 730, 758, 860, 875, 893, 980
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 2 cut(s) 786, 824
Ama87I CYCGRG 1 cut(s) 318
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 3 cut(s) 41, 95, 122
ApeKI GCWGC 5 cut(s) 15, 112, 232, 956, 959
ApoI RAATTY 3 cut(s) 183, 470, 590
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 42, 256
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 4 cut(s) 323, 440, 802, 953
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 534, 581
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 5 cut(s) 27, 124, 244, 943, 971
BccI CCATC 3 cut(s) 268, 272, 514
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 786, 824
BfaI CTAG 4 cut(s) 120, 677, 977, 1021
BfmI CTRYAG 1 cut(s) 957
BfoI RGCGCY 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 121
BisI GCNGC 6 cut(s) 16, 113, 233, 902, 957, 960
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 6 cut(s) 17, 114, 234, 903, 958, 961
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 853
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 42, 256
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 625, 937
BpiI GAAGAC 2 cut(s) 534, 581
BpmI CTGGAG 2 cut(s) 269, 780
Bpu10I CCTNAGC 1 cut(s) 876
BpuMI CCSGG 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 119, 317, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 645
Bse21I CCTNAGG 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 119, 317, 785
BseGI GGATG 2 cut(s) 525, 808
BseLI CCNNNNNNNGG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 229, 819, 890
BseRI GAGGAG 3 cut(s) 117, 242, 566
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 5 cut(s) 27, 124, 244, 943, 971
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 3 cut(s) 43, 97, 124
BsiHKAI GWGCWC 1 cut(s) 766
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 645
BsmAI GTCTC 2 cut(s) 786, 824
BsnI GGCC 3 cut(s) 43, 97, 124
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 325, 766
Bsp143I GATC 3 cut(s) 328, 445, 910
BspACI CCGC 3 cut(s) 902, 950, 970
BspANI GGCC 3 cut(s) 43, 97, 124
BspCNI CTCAG 3 cut(s) 228, 820, 889
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 961
BsrBI CCGCTC 1 cut(s) 970
BssECI CCNNGG 3 cut(s) 119, 317, 785
BssMI GATC 3 cut(s) 328, 445, 910
BssT1I CCWWGG 2 cut(s) 119, 785
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 2 cut(s) 52, 135
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 7 cut(s) 423, 510, 660, 687, 701, 732, 906
BstDEI CTNAG 5 cut(s) 92, 215, 570, 828, 876
BstF5I GGATG 2 cut(s) 525, 808
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 331, 448, 913
BstMAI GTCTC 2 cut(s) 786, 824
BstMBI GATC 3 cut(s) 328, 445, 910
BstMWI GCNNNNNNNGC 8 cut(s) 15, 109, 121, 509, 626, 635, 682, 956
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 957
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 5 cut(s) 27, 124, 244, 943, 971
BstV2I GAAGAC 2 cut(s) 534, 581
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 43, 97, 124
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 525, 808
Cac8I GCNNGC 7 cut(s) 423, 510, 660, 687, 701, 732, 906
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 42, 256
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 1009
CviAII CATG 2 cut(s) 194, 398
CviQI GTAC 1 cut(s) 1009
DdeI CTNAG 5 cut(s) 92, 215, 570, 828, 876
DpnI GATC 3 cut(s) 330, 447, 912
DpnII GATC 3 cut(s) 328, 445, 910
DriI GACNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 2 cut(s) 52, 135
Eam1105I GACNNNNNGTC 1 cut(s) 853
EarI CTCTTC 2 cut(s) 52, 135
Eco130I CCWWGG 2 cut(s) 119, 785
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 256
Eco47III AGCGCT 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 711
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 119, 785
ErhI CCWWGG 2 cut(s) 119, 785
FaeI CATG 2 cut(s) 197, 401
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 2 cut(s) 193, 397
Fnu4HI GCNGC 6 cut(s) 16, 113, 233, 902, 957, 960
FokI GGATG 2 cut(s) 532, 815
Fsp4HI GCNGC 6 cut(s) 16, 113, 233, 902, 957, 960
FspBI CTAG 4 cut(s) 120, 677, 977, 1021
GlaI GCGC 1 cut(s) 246
GluI GCNGC 6 cut(s) 16, 113, 233, 902, 957, 960
GsuI CTGGAG 2 cut(s) 269, 780
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 3 cut(s) 43, 97, 124
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 197, 401
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 3 cut(s) 33, 665, 779
HpaII CCGG 1 cut(s) 5
HphI GGTGA 4 cut(s) 323, 440, 802, 953
Hpy166II GTNNAC 2 cut(s) 137, 542
Hpy188I TCNGA 2 cut(s) 829, 847
Hpy188III TCNNGA 6 cut(s) 189, 348, 392, 440, 548, 878
Hpy8I GTNNAC 2 cut(s) 137, 542
Hpy99I CGWCG 2 cut(s) 23, 26
HpyAV CCTTC 2 cut(s) 23, 800
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 425, 458, 503, 629, 959
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 109, 121, 509, 626, 635, 682, 956
HpyF3I CTNAG 5 cut(s) 92, 215, 570, 828, 876
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 2 cut(s) 197, 401
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 328, 445, 910
LmnI GCTCC 4 cut(s) 229, 250, 761, 967
Lsp1109I GCAGC 5 cut(s) 27, 124, 244, 943, 971
LweI GCATC 2 cut(s) 625, 937
MaeI CTAG 4 cut(s) 120, 677, 977, 1021
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 210, 475, 565
MalI GATC 3 cut(s) 330, 447, 912
MbiI CCGCTC 1 cut(s) 970
MboI GATC 3 cut(s) 328, 445, 910
MboII GAAGA 9 cut(s) 69, 118, 122, 392, 455, 539, 586, 644, 956
MhlI GDGCHC 2 cut(s) 325, 766
MluCI AATT 5 cut(s) 183, 470, 590, 719, 884
MlyI GAGTC 1 cut(s) 788
MseI TTAA 4 cut(s) 365, 644, 722, 924
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 8 cut(s) 15, 109, 121, 509, 626, 635, 682, 956
NciI CCSGG 1 cut(s) 6
NdeII GATC 3 cut(s) 328, 445, 910
NlaIII CATG 2 cut(s) 197, 401
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 210, 475
NspI RCATGY 1 cut(s) 197
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 2 cut(s) 33, 665
PflFI GACNNNGTC 1 cut(s) 537
PkrI GCNGC 6 cut(s) 17, 114, 234, 903, 958, 961
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 42, 256
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 1 cut(s) 961
PsyI GACNNNGTC 1 cut(s) 537
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 1 cut(s) 1010
RsaNI GTAC 1 cut(s) 1009
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 4 cut(s) 365, 644, 722, 924
SatI GCNGC 6 cut(s) 16, 113, 233, 902, 957, 960
Sau3AI GATC 3 cut(s) 328, 445, 910
Sau96I GGNCC 2 cut(s) 42, 256
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 2 cut(s) 325, 766
SfaNI GCATC 2 cut(s) 625, 937
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 5 cut(s) 183, 470, 590, 719, 884
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 902, 950, 970
SspMI CTAG 4 cut(s) 120, 677, 977, 1021
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 2 cut(s) 119, 785
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 1 cut(s) 174
TaqI TCGA 6 cut(s) 24, 190, 270, 391, 717, 982
TaqII GACCGA 1 cut(s) 546
TasI AATT 5 cut(s) 183, 470, 590, 719, 884
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 2 cut(s) 33, 665
Tru1I TTAA 4 cut(s) 365, 644, 722, 924
Tru9I TTAA 4 cut(s) 365, 644, 722, 924
TseFI GTSAC 2 cut(s) 210, 475
TseI GCWGC 5 cut(s) 15, 112, 232, 956, 959
Tsp45I GTSAC 2 cut(s) 210, 475
TspDTI ATGAA 3 cut(s) 311, 383, 819
Tth111I GACNNNGTC 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 3 cut(s) 183, 470, 590
XceI RCATGY 1 cut(s) 197
XmaJI CCTAGG 1 cut(s) 119
XspI CTAG 4 cut(s) 120, 677, 977, 1021
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.