Rh2CG261100

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008231
Physical Location & Seq
Reverse (-)
28021495 .. 28024360
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG261100.1

Sequence Viewer

Length: 954 bp
ATGAGCAAGTATGGGTTGAACCTAAGGCCACAGCAGAAGAAGCAGCCCCCTAGACCTCCTCTTCGTAAACCTGTTGGTTTTGGCGATGATGATGACAATGATGTTGAGAGGGAAATTTCTCGACATGCTACCAAGAACAAGTCACTCAGGGATATTGAGGAGCAGCAGAGGAAAGCACTGGAGCAGGACCCATCGGTGTTTGACTATGATGGAGTTTATGATGATATGAAACAGAAAGCGATACAACCTCGGGCACAAGATCACCAAGAGAGAAAGTCAAGATATATTCCGCAGTTAATGAAAAAAGCAGAAGAACGAAATCGAGAGCAGGAGATAGTATTTGAAAGAAAGCTTGCAAAAGAGCGAAGTCAGGAAGATCACCTGTATGCAGACAAGGATAAATTTGTCACAACGGCTTACAAAAAGAAACTTGCAGAGCAGGCAAAATGGATTGAGGAAGACCGACTTCGTCAACTTCGGGAGGAGAAAGACGATGTTACTAAGAAGACGGATTTGAGTGAATTTTACTTCAACCTTGAAAAAAATGTTGCGTTTGGTGCAGAAGACGCCAAGTTAAGGAAAGAGAAGCAGGCTGAATTAACGAAGCTAGAGAAGCAGGCTGAAGTAAGCGAGCCAGAAAAACAGGTCGAATTAAAGAAGCTGGCAAAACTTGACGAGGGAGAAATAGCTGGAGCACCAATGCCATTGGAGTCTCCAAGGGTGAGGGAAGGGGATGAAGGTGAAAATACAACTATGGCTGAAACTGTTGAACCCTCTGACGAGAAGCCAGCTTCAAACACATCAGCTCAGGAAAAATTGTCAGCTGAACAGCCGCCAGCAGATCAACCAAAGGTTAATCATCATAAAAGAGGTGAAGATGCAGTGGCGGCAGCAAAGGAGCGGTTTCTAGCTCGAAAGAGGGCAAAAGAAGAACTAAAGTACTATGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

317

Amino Acids

36.82

Weight (kDa)

6.14

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 53 - 169 1.9e-37 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 901
AciI CCGC 4 cut(s) 290, 833, 887, 901
AcsI RAATTY 3 cut(s) 114, 401, 521
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 6 cut(s) 19, 344, 532, 539, 770, 795
AluBI AGCT 8 cut(s) 352, 607, 661, 689, 791, 806, 824, 911
AluI AGCT 8 cut(s) 352, 607, 661, 689, 791, 806, 824, 911
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 1 cut(s) 717
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 43, 163, 890
ApoI RAATTY 3 cut(s) 114, 401, 521
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 5 cut(s) 254, 371, 733, 752, 884
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 256
BbsI GAAGAC 3 cut(s) 465, 512, 570
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 55, 175, 902
BccI CCATC 2 cut(s) 199, 203
BceAI ACGGC 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 3 cut(s) 51, 608, 908
BisI GCNGC 5 cut(s) 44, 164, 833, 888, 891
BlsI GCNGC 5 cut(s) 45, 165, 834, 889, 892
BmcAI AGTACT 1 cut(s) 941
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 868
BpiI GAAGAC 3 cut(s) 465, 512, 570
BpmI CTGGAG 2 cut(s) 200, 711
Bpu10I CCTNAGC 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 248, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 183
Bse21I CCTNAGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 248, 716
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 160, 821
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 3 cut(s) 48, 173, 497
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 3 cut(s) 55, 175, 902
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 717
BsnI GGCC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 256, 697
Bsp143I GATC 3 cut(s) 259, 376, 841
BspACI CCGC 4 cut(s) 290, 833, 887, 901
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 159, 820
BspLI GGNNCC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 901
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 248, 716
BssMI GATC 3 cut(s) 259, 376, 841
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 716
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 8 cut(s) 354, 441, 591, 618, 632, 663, 789, 837
BstDEI CTNAG 4 cut(s) 23, 146, 501, 807
BstF5I GGATG 1 cut(s) 739
BstKTI GATC 3 cut(s) 262, 379, 844
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 3 cut(s) 259, 376, 841
BstMWI GCNNNNNNNGC 6 cut(s) 40, 440, 557, 566, 613, 887
BstNSI RCATGY 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 55, 175, 902
BstV2I GAAGAC 3 cut(s) 465, 512, 570
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 2 cut(s) 176, 888
Cac8I GCNNGC 8 cut(s) 354, 441, 591, 618, 632, 663, 789, 837
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 940
CviAII CATG 1 cut(s) 125
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 4 cut(s) 23, 146, 501, 807
DpnI GATC 3 cut(s) 261, 378, 843
DpnII GATC 3 cut(s) 259, 376, 841
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 1 cut(s) 128
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 44, 164, 833, 888, 891
FokI GGATG 1 cut(s) 746
Fsp4HI GCNGC 5 cut(s) 44, 164, 833, 888, 891
FspBI CTAG 3 cut(s) 51, 608, 908
GluI GCNGC 5 cut(s) 44, 164, 833, 888, 891
GsuI CTGGAG 2 cut(s) 200, 711
HaeIII GGCC 1 cut(s) 28
HgaI GACGC 1 cut(s) 575
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 1 cut(s) 128
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 710
HphI GGTGA 5 cut(s) 254, 371, 733, 752, 884
Hpy166II GTNNAC 2 cut(s) 68, 473
Hpy188I TCNGA 1 cut(s) 778
Hpy188III TCNNGA 6 cut(s) 120, 279, 323, 371, 479, 809
Hpy8I GTNNAC 2 cut(s) 68, 473
HpyAV CCTTC 2 cut(s) 722, 731
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4V TGCA 5 cut(s) 356, 389, 434, 560, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 440, 557, 566, 613, 887
HpyF3I CTNAG 4 cut(s) 23, 146, 501, 807
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 3 cut(s) 259, 376, 841
LmnI GCTCC 4 cut(s) 160, 181, 692, 898
Lsp1109I GCAGC 3 cut(s) 55, 175, 902
LweI GCATC 1 cut(s) 868
MaeI CTAG 3 cut(s) 51, 608, 908
MaeIII GTNAC 3 cut(s) 141, 406, 496
MalI GATC 3 cut(s) 261, 378, 843
MbiI CCGCTC 1 cut(s) 901
MboI GATC 3 cut(s) 259, 376, 841
MboII GAAGA 9 cut(s) 49, 53, 323, 386, 470, 517, 575, 887, 941
MhlI GDGCHC 2 cut(s) 256, 697
MluCI AATT 6 cut(s) 114, 401, 521, 596, 650, 815
MlyI GAGTC 1 cut(s) 719
MseI TTAA 5 cut(s) 296, 575, 599, 653, 855
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 824
MwoI GCNNNNNNNGC 6 cut(s) 40, 440, 557, 566, 613, 887
NdeII GATC 3 cut(s) 259, 376, 841
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 141, 406
NspI RCATGY 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 468
PkrI GCNGC 5 cut(s) 45, 165, 834, 889, 892
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 296, 575, 599, 653, 855
SatI GCNGC 5 cut(s) 44, 164, 833, 888, 891
Sau3AI GATC 3 cut(s) 259, 376, 841
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 1 cut(s) 719
SduI GDGCHC 2 cut(s) 256, 697
SfaNI GCATC 1 cut(s) 868
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 6 cut(s) 114, 401, 521, 596, 650, 815
SsiI CCGC 4 cut(s) 290, 833, 887, 901
SspMI CTAG 3 cut(s) 51, 608, 908
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 1 cut(s) 766
TaqI TCGA 4 cut(s) 121, 322, 648, 913
TaqII GACCGA 1 cut(s) 477
TasI AATT 6 cut(s) 114, 401, 521, 596, 650, 815
TatI WGTACW 1 cut(s) 939
TauI GCSGC 2 cut(s) 835, 890
Tru1I TTAA 5 cut(s) 296, 575, 599, 653, 855
Tru9I TTAA 5 cut(s) 296, 575, 599, 653, 855
TscAI CASTG 2 cut(s) 183, 888
TseFI GTSAC 2 cut(s) 141, 406
TseI GCWGC 3 cut(s) 43, 163, 890
Tsp45I GTSAC 2 cut(s) 141, 406
TspDTI ATGAA 3 cut(s) 242, 314, 750
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 183, 888
Tth111I GACNNNGTC 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 3 cut(s) 114, 401, 521
XceI RCATGY 1 cut(s) 128
XspI CTAG 3 cut(s) 51, 608, 908
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.