FvH4_1g21730

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008231
Physical Location & Seq
Reverse (-)
13694166 .. 13696608
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21730.t1

Sequence Viewer

Length: 954 bp
ATGAGCAAGTATGGATTGAACCTAAGGCCACAGCAGAAGAAGCAGCCCACTAGGCCTCCTCTTCGTAGACCTGTCGGTTTTGGTGATGATGATGACAATGATGTTGAGAGAGAAATTTCTCGACATGCTAACAAGAACAAGTCACTCAGGGATATTGAGGAGCAGCAGAGGAAAGCACTGGAGCAGGACCCATCAGTATTTGACTATGATGGAGTTTATGATGATATGAAACAGAAAGCCATACAACCTCGTGCACAAGAACAACAAGAAAGAAAGCCGAGATATATTCAGCATTTAATGAAAAAAGCAGAACAACGAAATCGTGAACATGAGATAGCATACGAAAGAAAGCTTGCAAAAGAGAGGAGTCAAGAAGATGACCTGTATGCGGATAAGGATAAATTTGTCACAAAGGCTTACAAAAAGAAACTTGCAGAGCAGGCAAAATGGATGGAGGAAGAGCGACTTCGTGAACTTAAGGAGGAGAAAGATGATGTTGCTAAGAAGAAAGATTTGAGTGAATTTTATTTCAACCTTGACAAAAATGTTGCGCTTGGTGCAGAAGATGCAAAGTCAAGGAAAGAGAAGCAGGCTAAATTAGTGAAGCTAGAGGACCCGGCTGAAGTGATCGAGCCAGAGAAACAGGTCGGATTAAGGAAGCCGGTAAAACTTGAAGAGGAAGAAATCGCTGGAGCACCGAGGCCATTGGAGTCTCCAAGGGTGAGGGAGGGGGGTGAAGGTGAAGATACAACTATGTCTGAAACTGTTGAACCCTCGGAGGAGAAGCCAGCTTCACAAACATCAGCTGAGGAAAAATTGTCAACTGAAGAGCCGCCAGCAGATCAACTAAAGGCTAATCATCATAAAAGAGGTGAAGATGCGGTGGTTGCTGCAAAGGAGCGCTTTTTAGCTCGAAAGAAAGCAAAAGAACAACAAAAGTACTATGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

318

Amino Acids

37.0

Weight (kDa)

6.15

Isoelectric Point (pI)

67.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 53 - 169 2.9e-39 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 67
AciI CCGC 3 cut(s) 389, 833, 881
AcsI RAATTY 3 cut(s) 114, 401, 521
AcuI CTGAAG 2 cut(s) 642, 846
AfaI GTAC 1 cut(s) 941
AfeI AGCGCT 1 cut(s) 902
AfiI CCNNNNNNNGG 1 cut(s) 388
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 4 cut(s) 19, 532, 674, 770
AluBI AGCT 5 cut(s) 352, 607, 791, 806, 911
AluI AGCT 5 cut(s) 352, 607, 791, 806, 911
Alw21I GWGCWC 2 cut(s) 256, 697
Alw26I GTCTC 1 cut(s) 717
Alw44I GTGCAC 1 cut(s) 252
Aor51HI AGCGCT 1 cut(s) 902
AoxI GGCC 3 cut(s) 26, 53, 701
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 43, 163, 890
ApoI RAATTY 3 cut(s) 114, 401, 521
AspLEI GCGC 2 cut(s) 553, 903
AspS9I GGNCC 2 cut(s) 187, 613
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 5 cut(s) 95, 733, 746, 752, 884
AvaII GGWCC 2 cut(s) 187, 613
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 256
BauI CACGAG 1 cut(s) 249
Bbv12I GWGCWC 2 cut(s) 256, 697
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 55, 175, 877
BccI CCATC 3 cut(s) 199, 203, 445
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 2 cut(s) 51, 608
BfoI RGCGCY 1 cut(s) 904
BfrI CTTAAG 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 4 cut(s) 44, 164, 833, 891
BlsI GCNGC 4 cut(s) 45, 165, 834, 892
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 2 cut(s) 187, 613
BmgT120I GGNCC 2 cut(s) 187, 613
BmiI GGNNCC 2 cut(s) 189, 615
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 2 cut(s) 556, 868
BpmI CTGGAG 2 cut(s) 200, 711
Bpu10I CCTNAGC 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 698, 716, 774
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 183
Bse21I CCTNAGG 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 698, 716, 774
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 160, 798
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 5 cut(s) 48, 173, 379, 497, 794
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 3 cut(s) 55, 175, 877
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 3 cut(s) 28, 55, 703
BsiHKAI GWGCWC 2 cut(s) 256, 697
BsiSI CCGG 2 cut(s) 617, 662
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 717
BsnI GGCC 3 cut(s) 28, 55, 703
Bsp1286I GDGCHC 2 cut(s) 256, 697
Bsp143I GATC 2 cut(s) 627, 841
BspACI CCGC 3 cut(s) 389, 833, 881
BspANI GGCC 3 cut(s) 28, 55, 703
BspCNI CTCAG 2 cut(s) 159, 799
BspLI GGNNCC 2 cut(s) 189, 615
BspQI GCTCTTC 2 cut(s) 453, 822
BspTI CTTAAG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 3 cut(s) 698, 716, 774
BssMI GATC 2 cut(s) 627, 841
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 716
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 4 cut(s) 66, 453, 669, 822
BstAFI CTTAAG 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 5 cut(s) 354, 441, 591, 789, 837
BstDEI CTNAG 4 cut(s) 23, 146, 501, 807
BstF5I GGATG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 904
BstHHI GCGC 2 cut(s) 553, 903
BstKTI GATC 2 cut(s) 630, 844
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 2 cut(s) 627, 841
BstMWI GCNNNNNNNGC 6 cut(s) 40, 52, 440, 557, 566, 887
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 55, 175, 877
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 3 cut(s) 28, 55, 703
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 5 cut(s) 354, 441, 591, 789, 837
CfoI GCGC 2 cut(s) 553, 903
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 187, 613
Csp6I GTAC 1 cut(s) 940
CviAII CATG 2 cut(s) 125, 329
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 4 cut(s) 23, 146, 501, 807
DpnI GATC 2 cut(s) 629, 843
DpnII GATC 2 cut(s) 627, 841
Eam1104I CTCTTC 4 cut(s) 66, 453, 669, 822
EarI CTCTTC 4 cut(s) 66, 453, 669, 822
Eco130I CCWWGG 1 cut(s) 716
Eco147I AGGCCT 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 187, 613
Eco47III AGCGCT 1 cut(s) 902
Eco57I CTGAAG 2 cut(s) 642, 846
Eco81I CCTNAGG 1 cut(s) 23
EcoO109I RGGNCCY 2 cut(s) 187, 613
EcoT14I CCWWGG 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 2 cut(s) 128, 332
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 887, 919
FatI CATG 2 cut(s) 124, 328
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 4 cut(s) 44, 164, 833, 891
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 4 cut(s) 44, 164, 833, 891
FspBI CTAG 2 cut(s) 51, 608
GlaI GCGC 2 cut(s) 552, 902
GluI GCNGC 4 cut(s) 44, 164, 833, 891
GsuI CTGGAG 2 cut(s) 200, 711
HaeII RGCGCY 1 cut(s) 904
HaeIII GGCC 3 cut(s) 28, 55, 703
HapII CCGG 2 cut(s) 617, 662
HhaI GCGC 2 cut(s) 553, 903
Hin1II CATG 2 cut(s) 128, 332
Hin6I GCGC 2 cut(s) 551, 901
HinP1I GCGC 2 cut(s) 551, 901
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 2 cut(s) 367, 710
HpaII CCGG 2 cut(s) 617, 662
HphI GGTGA 5 cut(s) 95, 733, 746, 752, 884
Hpy166II GTNNAC 5 cut(s) 68, 254, 326, 473, 822
Hpy188I TCNGA 3 cut(s) 650, 760, 778
Hpy188III TCNNGA 4 cut(s) 120, 323, 371, 470
Hpy8I GTNNAC 5 cut(s) 68, 254, 326, 473, 822
HpyAV CCTTC 1 cut(s) 731
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4V TGCA 6 cut(s) 254, 356, 434, 560, 569, 893
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 52, 440, 557, 566, 887
HpyF3I CTNAG 4 cut(s) 23, 146, 501, 807
Hsp92II CATG 2 cut(s) 128, 332
HspAI GCGC 2 cut(s) 551, 901
Kzo9I GATC 2 cut(s) 627, 841
LguI GCTCTTC 2 cut(s) 453, 822
LmnI GCTCC 4 cut(s) 160, 181, 692, 898
Lsp1109I GCAGC 3 cut(s) 55, 175, 877
LweI GCATC 2 cut(s) 556, 868
MaeI CTAG 2 cut(s) 51, 608
MaeIII GTNAC 2 cut(s) 141, 406
MalI GATC 2 cut(s) 629, 843
MboI GATC 2 cut(s) 627, 841
MhlI GDGCHC 2 cut(s) 256, 697
MluCI AATT 5 cut(s) 114, 401, 521, 596, 815
MlyI GAGTC 2 cut(s) 376, 719
MmeI TCCRAC 1 cut(s) 628
MseI TTAA 3 cut(s) 296, 477, 653
MspA1I CMGCKG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 2 cut(s) 617, 662
MspR9I CCNGG 1 cut(s) 617
MwoI GCNNNNNNNGC 6 cut(s) 40, 52, 440, 557, 566, 887
NciI CCSGG 1 cut(s) 617
NdeII GATC 2 cut(s) 627, 841
NlaIII CATG 2 cut(s) 128, 332
NlaIV GGNNCC 2 cut(s) 189, 615
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 141, 406
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 1 cut(s) 55
PciSI GCTCTTC 2 cut(s) 453, 822
PkrI GCNGC 4 cut(s) 45, 165, 834, 892
PleI GAGTC 2 cut(s) 375, 718
PpsI GAGTC 2 cut(s) 375, 718
PpuMI RGGWCCY 2 cut(s) 187, 613
Psp5II RGGWCCY 2 cut(s) 187, 613
PspN4I GGNNCC 2 cut(s) 189, 615
PspPI GGNCC 2 cut(s) 187, 613
PspPPI RGGWCCY 2 cut(s) 187, 613
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
SapI GCTCTTC 2 cut(s) 453, 822
SaqAI TTAA 3 cut(s) 296, 477, 653
SatI GCNGC 4 cut(s) 44, 164, 833, 891
Sau3AI GATC 2 cut(s) 627, 841
Sau96I GGNCC 2 cut(s) 187, 613
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 2 cut(s) 376, 719
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 2 cut(s) 256, 697
SfaNI GCATC 2 cut(s) 556, 868
SinI GGWCC 2 cut(s) 187, 613
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 5 cut(s) 114, 401, 521, 596, 815
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 3 cut(s) 389, 833, 881
SspMI CTAG 2 cut(s) 51, 608
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 121, 630, 913
TasI AATT 5 cut(s) 114, 401, 521, 596, 815
TatI WGTACW 1 cut(s) 939
TauI GCSGC 1 cut(s) 835
Tru1I TTAA 3 cut(s) 296, 477, 653
Tru9I TTAA 3 cut(s) 296, 477, 653
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 2 cut(s) 141, 406
TseI GCWGC 3 cut(s) 43, 163, 890
Tsp45I GTSAC 2 cut(s) 141, 406
TspDTI ATGAA 2 cut(s) 242, 314
TspRI CASTG 1 cut(s) 183
Vha464I CTTAAG 1 cut(s) 476
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 2 cut(s) 187, 613
XapI RAATTY 3 cut(s) 114, 401, 521
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 67
XspI CTAG 2 cut(s) 51, 608
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.