Rroxscaffold_2G00128070

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008231
Physical Location & Seq
Forward (+)
63658313 .. 63660918
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128070.1

Sequence Viewer

Length: 954 bp
ATGAGCAAGTATGGGTTGAACCTAAGGCCACAGCAGAAGAAGCAGCCCCCTAGGCCTCCTCTTCGTAAACCTGTTGGTTTTGGCGATGATGATGACAATGACGTTGAGAGGGAAATTTCTCGACATGCTACCAAGAACAAGTCACTCAGGGATATTGAGGAGCAGCAGAGGAAAGCGCTGGAGCAGGACCCATCGGTGTTCGACTATGATGGAGTTTATGATGATATGAAACAGAAAGCGATACAACCTCGGGCACAAGATCACCAAGAGAGAAAGTCAAGATATATTCAGCAGTTAATGAAAAAAGCAGAAGAACGAAATCGAGAGCATGAGATAGCATTTGAAAGAAAGCTTGCAAAAGAGCGAAGTCAAGAAGATCACCTGTATGCAGACAAGGATAAATTTGTCACAAAGGCTTACAAAAAGAAACTTGCAGAGCAGGCAAAATGGATGGAGGAAGACCGACTTCGTCAACTTCGGGAGGAGAAAGACGATGTTACTAAGAAGACAGATTTGAGTGAATTTTACTTCAACCTTGAAAAAAATGTTGCGTTTGGTGCAGAAGATGCCAAGTTAAGGAAAGAGAAGCAGGCTGAATCAACGAAGCTAGAGAAGCAGGCTGAAGTAAGCGAGCCAGAGAAACAGGTCGAATTAAAGAAGCTGGCAAAACTTGACGAGGGAGAAATAGCTGGAGCACCAATGCCATTGGAGTCTCCAAGGGTGAGGGAGGGGGATGAAGGTCAAAATACAACTATGTCTGAGACTATTGAACCGTCTGACGAGAAGTCAGCTTCAAACACATCAGCTCAGGAAAAATTGTCAGCTGAACAGCCGCCAGCAGATCAACCAAAGGTTAATCATCACAAAAGAGGTGAAGATGCGGTGGCTGCAGCAAAGGAGCGGTTTCTAGCTCGAAAGAGGGCAAAAGAACAACAAAAGTACTATGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

317

Amino Acids

36.95

Weight (kDa)

6.67

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 53 - 169 1.2e-37 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 901
AciI CCGC 3 cut(s) 833, 881, 901
AcsI RAATTY 3 cut(s) 114, 401, 521
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 1 cut(s) 941
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 6 cut(s) 19, 344, 532, 539, 770, 795
AhdI GACNNNNNGTC 1 cut(s) 784
AluBI AGCT 8 cut(s) 352, 607, 661, 689, 791, 806, 824, 911
AluI AGCT 8 cut(s) 352, 607, 661, 689, 791, 806, 824, 911
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 717, 755
Ama87I CYCGRG 1 cut(s) 249
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 2 cut(s) 26, 53
ApeKI GCWGC 4 cut(s) 43, 163, 887, 890
ApoI RAATTY 3 cut(s) 114, 401, 521
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 4 cut(s) 254, 371, 733, 884
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 465, 512
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 4 cut(s) 55, 175, 874, 902
BccI CCATC 3 cut(s) 199, 203, 445
BcoDI GTCTC 2 cut(s) 717, 755
BfaI CTAG 4 cut(s) 51, 608, 908, 952
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 5 cut(s) 44, 164, 833, 888, 891
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 5 cut(s) 45, 165, 834, 889, 892
BmcAI AGTACT 1 cut(s) 941
Bme18I GGWCC 1 cut(s) 187
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 556, 868
BpiI GAAGAC 2 cut(s) 465, 512
BpmI CTGGAG 2 cut(s) 200, 711
Bpu10I CCTNAGC 1 cut(s) 807
BsaJI CCNNGG 3 cut(s) 50, 248, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse21I CCTNAGG 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 50, 248, 716
BseGI GGATG 2 cut(s) 456, 739
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMII CTCAG 3 cut(s) 160, 750, 821
BseRI GAGGAG 3 cut(s) 48, 173, 497
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 4 cut(s) 55, 175, 874, 902
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 2 cut(s) 28, 55
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 2 cut(s) 717, 755
BsnI GGCC 2 cut(s) 28, 55
BsoBI CYCGRG 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 256, 697
Bsp143I GATC 3 cut(s) 259, 376, 841
BspACI CCGC 3 cut(s) 833, 881, 901
BspANI GGCC 2 cut(s) 28, 55
BspCNI CTCAG 3 cut(s) 159, 751, 820
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 892
BsrBI CCGCTC 1 cut(s) 901
BssECI CCNNGG 3 cut(s) 50, 248, 716
BssMI GATC 3 cut(s) 259, 376, 841
BssT1I CCWWGG 2 cut(s) 50, 716
Bst4CI ACNGT 1 cut(s) 774
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 7 cut(s) 354, 441, 591, 618, 632, 663, 837
BstDEI CTNAG 5 cut(s) 23, 146, 501, 759, 807
BstF5I GGATG 2 cut(s) 456, 739
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 262, 379, 844
BstMAI GTCTC 2 cut(s) 717, 755
BstMBI GATC 3 cut(s) 259, 376, 841
BstMWI GCNNNNNNNGC 7 cut(s) 40, 52, 440, 557, 566, 613, 887
BstNSI RCATGY 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 55, 175, 874, 902
BstV2I GAAGAC 2 cut(s) 465, 512
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 2 cut(s) 28, 55
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 456, 739
Cac8I GCNNGC 7 cut(s) 354, 441, 591, 618, 632, 663, 837
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 940
CviAII CATG 2 cut(s) 125, 329
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 5 cut(s) 23, 146, 501, 759, 807
DpnI GATC 3 cut(s) 261, 378, 843
DpnII GATC 3 cut(s) 259, 376, 841
DriI GACNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 50, 716
Eco147I AGGCCT 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 50, 716
ErhI CCWWGG 2 cut(s) 50, 716
FaeI CATG 2 cut(s) 128, 332
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 2 cut(s) 124, 328
Fnu4HI GCNGC 5 cut(s) 44, 164, 833, 888, 891
FokI GGATG 2 cut(s) 463, 746
Fsp4HI GCNGC 5 cut(s) 44, 164, 833, 888, 891
FspBI CTAG 4 cut(s) 51, 608, 908, 952
GlaI GCGC 1 cut(s) 177
GluI GCNGC 5 cut(s) 44, 164, 833, 888, 891
GsuI CTGGAG 2 cut(s) 200, 711
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 2 cut(s) 28, 55
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 128, 332
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 2 cut(s) 596, 710
HphI GGTGA 4 cut(s) 254, 371, 733, 884
Hpy166II GTNNAC 2 cut(s) 68, 473
Hpy188I TCNGA 2 cut(s) 760, 778
Hpy188III TCNNGA 6 cut(s) 120, 279, 323, 371, 479, 809
Hpy8I GTNNAC 2 cut(s) 68, 473
HpyAV CCTTC 1 cut(s) 731
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 356, 389, 434, 560, 890
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 52, 440, 557, 566, 613, 887
HpyF3I CTNAG 5 cut(s) 23, 146, 501, 759, 807
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 128, 332
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 3 cut(s) 259, 376, 841
LmnI GCTCC 4 cut(s) 160, 181, 692, 898
Lsp1109I GCAGC 4 cut(s) 55, 175, 874, 902
LweI GCATC 2 cut(s) 556, 868
MaeI CTAG 4 cut(s) 51, 608, 908, 952
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 141, 406, 496
MalI GATC 3 cut(s) 261, 378, 843
MbiI CCGCTC 1 cut(s) 901
MboI GATC 3 cut(s) 259, 376, 841
MboII GAAGA 8 cut(s) 49, 53, 323, 386, 470, 517, 575, 887
MhlI GDGCHC 2 cut(s) 256, 697
MluCI AATT 5 cut(s) 114, 401, 521, 650, 815
MlyI GAGTC 1 cut(s) 719
MseI TTAA 4 cut(s) 296, 575, 653, 855
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 824
MwoI GCNNNNNNNGC 7 cut(s) 40, 52, 440, 557, 566, 613, 887
NdeII GATC 3 cut(s) 259, 376, 841
NlaIII CATG 2 cut(s) 128, 332
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 141, 406
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 596
PflFI GACNNNGTC 1 cut(s) 468
PkrI GCNGC 5 cut(s) 45, 165, 834, 889, 892
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 1 cut(s) 892
PsyI GACNNNGTC 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 4 cut(s) 296, 575, 653, 855
SatI GCNGC 5 cut(s) 44, 164, 833, 888, 891
Sau3AI GATC 3 cut(s) 259, 376, 841
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 1 cut(s) 719
SduI GDGCHC 2 cut(s) 256, 697
SfaNI GCATC 2 cut(s) 556, 868
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 5 cut(s) 114, 401, 521, 650, 815
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 3 cut(s) 833, 881, 901
SspMI CTAG 4 cut(s) 51, 608, 908, 952
StuI AGGCCT 1 cut(s) 55
StyI CCWWGG 2 cut(s) 50, 716
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 1 cut(s) 105
TaqI TCGA 5 cut(s) 121, 201, 322, 648, 913
TaqII GACCGA 1 cut(s) 477
TasI AATT 5 cut(s) 114, 401, 521, 650, 815
TatI WGTACW 1 cut(s) 939
TauI GCSGC 1 cut(s) 835
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 4 cut(s) 296, 575, 653, 855
Tru9I TTAA 4 cut(s) 296, 575, 653, 855
TseFI GTSAC 2 cut(s) 141, 406
TseI GCWGC 4 cut(s) 43, 163, 887, 890
Tsp45I GTSAC 2 cut(s) 141, 406
TspDTI ATGAA 3 cut(s) 242, 314, 750
Tth111I GACNNNGTC 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 3 cut(s) 114, 401, 521
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 4 cut(s) 51, 608, 908, 952
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.