Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008387

Physical Location & Seq

Genomic Coordinates Forward (+)

20944136 .. 20946718

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCAGCGTTGCCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGACTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGACGCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGGCTCTTGTTCATGAGTGGGAATCCAGAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTAAGAGTATGTTTGGAACTGGTATTGCCAAGATGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTACTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAAGTCTAGTCCCGGAGTTGGCGACTAAGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGTTGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTCACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATAGTGAAAGGTGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCTAAGACCGGCCTCCAAAAGCTATCGAGTGAAACACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAAGTGCGTTTCCAGCCAAAAGCATAGCCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGAATCTAGCAATCTGTGGAGATTTCTGTGTCAGCCCAAATGTTGAAGGTGCAATTCTCAGTGGCTTAGCTGCAGCGTCAAAGCTTTTGCAGACTTCTAGCTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_8

Protein Analysis

384

Amino Acids

41.48

Weight (kDa)

6.94

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	22 - 60	6.4e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	25 - 94	6e-15	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	88 - 377	1e-06	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55980 AT1G55980 AT1G55980 AT1G56000 AT1G56000
fragaria_vesca	FvH4_3g16060
malus_domestica	MD05G1215100.v1.1
prunus_persica	Prupe.4G143800_v2.0.a1 Prupe.4G143800_v2.0.a1
pyrus_communis	pycom05g19810
rosa_chinensis	RchiOBHm_Chr5g0027031
rosa_laevigata	RLG00000032980 RLG00000032984
rosa_multiflora	Rmu_sc0000882.1_g000020 Rmu_sc0020999.1_g000001 Rmu_sc0021000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052460
rosa_rugosa	Rorug05G0096700
rosa_samantha	Rh5AG190300 Rh5BG187900 Rh5CG207700 Rh5DG189700
rosa_wichuraiana	Rw5G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	2 cut(s)	84, 614
AcsI	RAATTY	3 cut(s)	87, 532, 748
AcuI	CTGAAG	1 cut(s)	930
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	4 cut(s)	643, 731, 981, 982
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	522, 703, 745, 922, 1091
AjnI	CCWGG	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	8 cut(s)	233, 655, 698, 765, 880, 1115, 1129, 1146
AluI	AGCT	8 cut(s)	233, 655, 698, 765, 880, 1115, 1129, 1146
Alw21I	GWGCWC	2 cut(s)	235, 938
Alw26I	GTCTC	2 cut(s)	136, 183
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	3 cut(s)	423, 868, 940
ApeKI	GCWGC	7 cut(s)	5, 45, 81, 655, 1115, 1118, 1146
ApoI	RAATTY	3 cut(s)	87, 532, 748
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	3 cut(s)	402, 638, 792
AsuNHI	GCTAGC	1 cut(s)	694
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	2 cut(s)	235, 772
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
Bbv12I	GWGCWC	2 cut(s)	235, 938
BbvI	GCAGC	7 cut(s)	17, 57, 93, 642, 1102, 1130, 1133
BccI	CCATC	4 cut(s)	197, 472, 542, 975
BceAI	ACGGC	5 cut(s)	38, 56, 83, 694, 998
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	813
BcnI	CCSGG	3 cut(s)	402, 638, 792
BcoDI	GTCTC	2 cut(s)	136, 183
BfaI	CTAG	4 cut(s)	632, 695, 1052, 1143
BfmI	CTRYAG	1 cut(s)	1116
BfrI	CTTAAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	813
BisI	GCNGC	7 cut(s)	6, 46, 82, 656, 1116, 1119, 1147
BlpI	GCTNAGC	1 cut(s)	1111
BlsI	GCNGC	7 cut(s)	7, 47, 83, 657, 1117, 1120, 1148
Bme1390I	CCNGG	4 cut(s)	165, 402, 638, 792
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	97, 708, 1028
BmrFI	CCNGG	4 cut(s)	165, 402, 638, 792
BmsI	GCATC	5 cut(s)	116, 250, 367, 369, 569
BmtI	GCTAGC	1 cut(s)	698
BoxI	GACNNNNGTC	3 cut(s)	153, 175, 627
BplI	GAGNNNNNCTC	2 cut(s)	754, 786
BpmI	CTGGAG	2 cut(s)	114, 819
Bpu10I	CCTNAGC	1 cut(s)	937
Bpu1102I	GCTNAGC	1 cut(s)	1111
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	3 cut(s)	402, 638, 792
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	226, 264, 503, 584
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 698, 728
Bsc4I	CCNNNNNNNGG	4 cut(s)	643, 731, 981, 982
Bse118I	RCCGGY	2 cut(s)	22, 866
Bse1I	ACTGG	3 cut(s)	469, 607, 725
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	226, 264, 503, 584
BseGI	GGATG	2 cut(s)	360, 382
BseLI	CCNNNNNNNGG	4 cut(s)	643, 731, 981, 982
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	951, 1117
BseNI	ACTGG	3 cut(s)	469, 607, 725
BseRI	GAGGAG	1 cut(s)	1034
BseXI	GCAGC	7 cut(s)	17, 57, 93, 642, 1102, 1130, 1133
BseYI	CCCAGC	1 cut(s)	765
BshFI	GGCC	3 cut(s)	425, 870, 942
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	2 cut(s)	235, 938
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	5 cut(s)	23, 401, 638, 791, 867
BslFI	GGGAC	2 cut(s)	620, 807
BslI	CCNNNNNNNGG	4 cut(s)	643, 731, 981, 982
BsmAI	GTCTC	2 cut(s)	136, 183
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	620, 807
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	3 cut(s)	425, 870, 942
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	3 cut(s)	235, 772, 938
Bsp1720I	GCTNAGC	1 cut(s)	1111
Bsp19I	CCATGG	3 cut(s)	226, 264, 503
BspACI	CCGC	2 cut(s)	84, 614
BspANI	GGCC	3 cut(s)	425, 870, 942
BspCNI	CTCAG	2 cut(s)	950, 1116
BspHI	TCATGA	2 cut(s)	277, 966
BspLI	GGNNCC	3 cut(s)	97, 708, 1028
BspMAI	CTGCAG	1 cut(s)	1120
BspOI	GCTAGC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	1026
BspTI	CTTAAG	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	22, 866
BsrI	ACTGG	3 cut(s)	469, 607, 725
BssAI	RCCGGY	2 cut(s)	22, 866
BssECI	CCNNGG	4 cut(s)	226, 264, 503, 584
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	4 cut(s)	226, 264, 503, 584
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	776, 798, 851
Bst6I	CTCTTC	3 cut(s)	181, 489, 906
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	625
BstC8I	GCNNGC	2 cut(s)	24, 696
BstDEI	CTNAG	6 cut(s)	420, 651, 861, 937, 1103, 1111
BstDSI	CCRYGG	3 cut(s)	226, 264, 503
BstF5I	GGATG	2 cut(s)	360, 382
BstMAI	GTCTC	2 cut(s)	136, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 998
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	178
BstPAI	GACNNNNGTC	3 cut(s)	153, 175, 627
BstSCI	CCNGG	4 cut(s)	163, 400, 636, 790
BstSFI	CTRYAG	1 cut(s)	1116
BstV1I	GCAGC	7 cut(s)	17, 57, 93, 642, 1102, 1130, 1133
BsuI	GTATCC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	425, 870, 942
BtgI	CCRYGG	3 cut(s)	226, 264, 503
BtsCI	GGATG	2 cut(s)	360, 382
BtsIMutI	CAGTG	4 cut(s)	772, 856, 938, 1111
Cac8I	GCNNGC	2 cut(s)	24, 696
CciI	TCATGA	2 cut(s)	277, 966
Cfr10I	RCCGGY	2 cut(s)	22, 866
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	3 cut(s)	118, 180, 1110
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	8 cut(s)	175, 227, 265, 278, 406, 504, 678, 967
DdeI	CTNAG	6 cut(s)	420, 651, 861, 937, 1103, 1111
Eam1104I	CTCTTC	3 cut(s)	181, 489, 906
EarI	CTCTTC	3 cut(s)	181, 489, 906
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	4 cut(s)	226, 264, 503, 584
Eco147I	AGGCCT	2 cut(s)	425, 942
Eco24I	GRGCYC	2 cut(s)	235, 772
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	4 cut(s)	226, 264, 503, 584
EcoT38I	GRGCYC	2 cut(s)	235, 772
ErhI	CCWWGG	4 cut(s)	226, 264, 503, 584
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	8 cut(s)	178, 230, 268, 281, 409, 507, 681, 970
FaqI	GGGAC	2 cut(s)	620, 807
FatI	CATG	8 cut(s)	174, 226, 264, 277, 405, 503, 677, 966
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	7 cut(s)	6, 46, 82, 656, 1116, 1119, 1147
FokI	GGATG	2 cut(s)	347, 389
FriOI	GRGCYC	2 cut(s)	235, 772
Fsp4HI	GCNGC	7 cut(s)	6, 46, 82, 656, 1116, 1119, 1147
FspBI	CTAG	4 cut(s)	632, 695, 1052, 1143
GluI	GCNGC	7 cut(s)	6, 46, 82, 656, 1116, 1119, 1147
GsaI	CCCAGC	1 cut(s)	769
GsuI	CTGGAG	2 cut(s)	114, 819
HaeIII	GGCC	3 cut(s)	425, 870, 942
HapII	CCGG	5 cut(s)	23, 401, 638, 791, 867
HgaI	GACGC	3 cut(s)	118, 180, 1110
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	8 cut(s)	178, 230, 268, 281, 409, 507, 681, 970
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	1127
HinfI	GANTC	7 cut(s)	112, 149, 287, 437, 518, 606, 1048
HpaII	CCGG	5 cut(s)	23, 401, 638, 791, 867
Hpy166II	GTNNAC	5 cut(s)	161, 170, 513, 591, 801
Hpy188I	TCNGA	5 cut(s)	259, 307, 565, 754, 910
Hpy188III	TCNNGA	7 cut(s)	93, 278, 291, 620, 745, 836, 967
Hpy8I	GTNNAC	5 cut(s)	161, 170, 513, 591, 801
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	58, 202, 365, 1085
HpyCH4III	ACNGT	3 cut(s)	776, 798, 851
HpyCH4V	TGCA	8 cut(s)	107, 380, 560, 658, 826, 1097, 1118, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 998
HpyF3I	CTNAG	6 cut(s)	420, 651, 861, 937, 1103, 1111
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	8 cut(s)	178, 230, 268, 281, 409, 507, 681, 970
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
LmnI	GCTCC	4 cut(s)	95, 230, 238, 706
Lsp1109I	GCAGC	7 cut(s)	17, 57, 93, 642, 1102, 1130, 1133
LweI	GCATC	5 cut(s)	116, 250, 367, 369, 569
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	4 cut(s)	632, 695, 1052, 1143
MaeIII	GTNAC	2 cut(s)	136, 598
MboII	GAAGA	6 cut(s)	136, 198, 212, 503, 506, 923
MhlI	GDGCHC	3 cut(s)	235, 772, 938
MluCI	AATT	5 cut(s)	15, 87, 532, 748, 1098
MlyI	GAGTC	4 cut(s)	106, 143, 446, 600
MmeI	TCCRAC	3 cut(s)	369, 388, 468
MnlI	CCTC	7 cut(s)	287, 352, 627, 727, 881, 1012, 1017
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	2 cut(s)	447, 626
MspA1I	CMGCKG	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	625
MspI	CCGG	5 cut(s)	23, 401, 638, 791, 867
MspR9I	CCNGG	4 cut(s)	165, 402, 638, 792
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	104, 998
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	3 cut(s)	402, 638, 792
NcoI	CCATGG	3 cut(s)	226, 264, 503
NgoMIV	GCCGGC	1 cut(s)	22
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	8 cut(s)	178, 230, 268, 281, 409, 507, 681, 970
NlaIV	GGNNCC	3 cut(s)	97, 708, 1028
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	2 cut(s)	277, 966
PceI	AGGCCT	2 cut(s)	425, 942
PctI	GAATGC	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	287, 518, 1048
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	7 cut(s)	7, 47, 83, 657, 1117, 1120, 1148
PleI	GAGTC	4 cut(s)	106, 143, 445, 600
PpsI	GAGTC	4 cut(s)	106, 143, 445, 600
PshAI	GACNNNNGTC	3 cut(s)	153, 175, 627
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	97, 708, 1028
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	1120
SacI	GAGCTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	447, 626
SatI	GCNGC	7 cut(s)	6, 46, 82, 656, 1116, 1119, 1147
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	4 cut(s)	106, 143, 446, 600
ScrFI	CCNGG	4 cut(s)	165, 402, 638, 792
SduI	GDGCHC	3 cut(s)	235, 772, 938
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	5 cut(s)	116, 250, 367, 369, 569
SfcI	CTRYAG	1 cut(s)	1116
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	594, 625
SmoI	CTYRAG	2 cut(s)	594, 625
Sse9I	AATT	5 cut(s)	15, 87, 532, 748, 1098
SseBI	AGGCCT	2 cut(s)	425, 942
SsiI	CCGC	2 cut(s)	84, 614
SspMI	CTAG	4 cut(s)	632, 695, 1052, 1143
SstI	GAGCTC	1 cut(s)	235
StuI	AGGCCT	2 cut(s)	425, 942
StyD4I	CCNGG	4 cut(s)	163, 400, 636, 790
StyI	CCWWGG	4 cut(s)	226, 264, 503, 584
TaaI	ACNGT	3 cut(s)	776, 798, 851
TaqI	TCGA	6 cut(s)	110, 147, 222, 546, 719, 884
TasI	AATT	5 cut(s)	15, 87, 532, 748, 1098
TfiI	GAWTC	3 cut(s)	287, 518, 1048
Tru1I	TTAA	2 cut(s)	447, 626
Tru9I	TTAA	2 cut(s)	447, 626
TscAI	CASTG	4 cut(s)	779, 856, 938, 1111
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	7 cut(s)	5, 45, 81, 655, 1115, 1118, 1146
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	77, 266, 422, 955, 983
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	4 cut(s)	779, 856, 938, 1111
Vha464I	CTTAAG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	3 cut(s)	87, 532, 748
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	800
XspI	CTAG	4 cut(s)	632, 695, 1052, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.