Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008387

Physical Location & Seq

Genomic Coordinates Forward (+)

22688758 .. 22692438

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19810.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCTGAAAGCTGAGTTAATGGTAGAGATCCAACTACCAACTGCCTTTCAGTTTGTGCCGGGAAGTGAAGCAACGAACGGTGGGAAGGAAGGAAAGAGAGCAGAGCAGACTTTGAGCAGGAGTGAAGCAATGAATACCACTAAAGTTGCGGTGGTGGGAAGTGGAATTTCAGGAGCAGTGTGTGCATCAACTCTCGCCAGAAATGGAGTGTCTGTAACTTTGTTCGAGTCTGCCAGAGGCCCCGGCGGCCGCATGTCTCAAAGAAGAGAAGTTGTTGAAGATGAGAAGGAGCTATTGTTTGACCATGGTGCTCCATTTTTCAATGCCAACAAAACCGAGGTTCTCGGTCTTGTTCATGAATGGGAATCAAAGGGTCTTGTTACTTGCTGGAAAGAGAAATTTGGCTTCTTTGATCGCATTTCCAACAAATTTTTTGACCTCGACCAGGAAGGATTAATAAGTAAGAGATATGTGGGTATCCCAGGCATGAATTCTATATGCAGAGCATTAAGCCAGGAGCCCGTGGAAAGTAAGTTTGGGGCGAGTGTTGGGAAATTGGAGTGGCTAGAGGATGAAAATTTGTGGTCATTGATAGGTTCAGATGGGCAAAATCTTGGCCAGTTTAAGGGAGTGGTTGCAACAGACAAAAACCTAGTTTCGCCCAGGTTTACAAGTGTTACGGGAAGACAACCACCTCTTGATTTAAATTTAATTCCAGAGTTGGCGGTTAAGTTAAATGATATTCCTGTCCATCCATGCTTTGCTCTCATGATAGCATTTTCAGAGCCTGTGTCATCAATACCCTTCAAAGGTTTCTCAATAAAAGGTTCTGAAGTCTTAAGCTGGGCTCATTGTGACAGCAGCAAGCCTGGCCGTTCTACCTCTAGCGAGCGATGGGTTTTGCATTCAACAATGGAGTATGCTCAGAGTGTAATTGCTCAAACTGGACTTCAGAAACTTTCGAATGCAACATTGACAAAAGTGGCTGAAGAACTATTCCAAGAATTTCAAAGCATGGGACTTAATATTCCACACCCCTTTTTCAAGAAAGCTCATAGATGGGGAAGTGCTTTTCCAGCCGCAAGCGTAGCCAGAGACGAGAAATGCCTTTGGGATAAAAACAAGAGGCTTGCCATCTGTGGAGATTTCTGTGTTAGTCCTAATGTTGAAGGTGCTATAGCTAGCGGAATAGCTGCTGCTTCAAAACTCACAGAGATCCTCAGCTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

411

Amino Acids

44.68

Weight (kDa)

6.43

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55980 AT1G55980 AT1G55980 AT1G56000 AT1G56000
fragaria_vesca	FvH4_3g16060
malus_domestica	MD05G1215100.v1.1
prunus_persica	Prupe.4G143800_v2.0.a1 Prupe.4G143800_v2.0.a1
pyrus_communis	pycom05g19810
rosa_chinensis	RchiOBHm_Chr5g0027031
rosa_laevigata	RLG00000032980 RLG00000032984
rosa_multiflora	Rmu_sc0000882.1_g000020 Rmu_sc0020999.1_g000001 Rmu_sc0021000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052460
rosa_rugosa	Rorug05G0096700
rosa_samantha	Rh5AG190300 Rh5BG187900 Rh5CG207700 Rh5DG189700
rosa_wichuraiana	Rw5G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	149, 246, 250, 725, 1080, 1185
AclWI	GGATC	2 cut(s)	22, 1210
AcoI	YGGCCR	3 cut(s)	247, 616, 871
AcsI	RAATTY	7 cut(s)	165, 398, 428, 490, 577, 706, 1004
AcuI	CTGAAG	3 cut(s)	852, 935, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	445, 625, 809
AflII	CTTAAG	1 cut(s)	838
AgsI	TTSAA	8 cut(s)	278, 322, 808, 909, 1010, 1045, 1169, 1203
AjnI	CCWGG	5 cut(s)	444, 481, 513, 662, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	7 cut(s)	11, 292, 843, 1052, 1181, 1193, 1224
AluI	AGCT	7 cut(s)	11, 292, 843, 1052, 1181, 1193, 1224
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	261, 1089
AlwI	GGATC	2 cut(s)	22, 1210
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	4 cut(s)	238, 247, 616, 871
ApeKI	GCWGC	4 cut(s)	861, 1193, 1196, 1224
ApoI	RAATTY	7 cut(s)	165, 398, 428, 490, 577, 706, 1004
AseI	ATTAAT	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	60, 243
AsuII	TTCGAA	1 cut(s)	962
AsuNHI	GCTAGC	1 cut(s)	1181
BalI	TGGCCA	1 cut(s)	618
BanII	GRGCYC	2 cut(s)	522, 850
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	1220
BbvI	GCAGC	4 cut(s)	873, 1180, 1183, 1211
BccI	CCATC	5 cut(s)	596, 759, 888, 1053, 1142
BceAI	ACGGC	1 cut(s)	858
BciT130I	CCWGG	5 cut(s)	446, 483, 515, 664, 870
BciVI	GTATCC	1 cut(s)	488
BcnI	CCSGG	2 cut(s)	60, 243
BcoDI	GTCTC	2 cut(s)	261, 1089
BfaI	CTAG	4 cut(s)	566, 653, 885, 1182
BfmI	CTRYAG	1 cut(s)	1176
BfrI	CTTAAG	1 cut(s)	838
BfuI	GTATCC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	7 cut(s)	247, 250, 862, 1080, 1194, 1197, 1225
BlsI	GCNGC	7 cut(s)	248, 251, 863, 1081, 1195, 1198, 1226
Bme1390I	CCNGG	7 cut(s)	60, 243, 446, 483, 515, 664, 870
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	241, 519
BmrFI	CCNGG	7 cut(s)	60, 243, 446, 483, 515, 664, 870
BmsI	GCATC	1 cut(s)	194
BmtI	GCTAGC	1 cut(s)	1185
BpiI	GAAGAC	1 cut(s)	691
Bpu10I	CCTNAGC	1 cut(s)	1220
Bpu14I	TTCGAA	1 cut(s)	962
BpuMI	CCSGG	2 cut(s)	60, 243
BsaJI	CCNNGG	6 cut(s)	241, 304, 336, 481, 522, 662
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 625, 809
Bse1I	ACTGG	2 cut(s)	619, 949
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	5 cut(s)	446, 483, 515, 664, 870
BseDI	CCNNGG	6 cut(s)	241, 304, 336, 481, 522, 662
BseGI	GGATG	2 cut(s)	577, 751
BseLI	CCNNNNNNNGG	3 cut(s)	445, 625, 809
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	938
BseNI	ACTGG	2 cut(s)	619, 949
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	4 cut(s)	873, 1180, 1183, 1211
BseYI	CCCAGC	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	240, 249, 618, 873
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	59, 243
BslFI	GGGAC	1 cut(s)	1032
BslI	CCNNNNNNNGG	3 cut(s)	445, 625, 809
BsmAI	GTCTC	2 cut(s)	261, 1089
BsmBI	CGTCTC	1 cut(s)	1089
BsmFI	GGGAC	1 cut(s)	1032
BsmI	GAATGC	2 cut(s)	904, 970
BsnI	GGCC	4 cut(s)	240, 249, 618, 873
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1286I	GDGCHC	3 cut(s)	313, 522, 850
Bsp143I	GATC	3 cut(s)	27, 412, 1215
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	6 cut(s)	149, 246, 250, 725, 1080, 1185
BspANI	GGCC	4 cut(s)	240, 249, 618, 873
BspCNI	CTCAG	3 cut(s)	4, 937, 1233
BspHI	TCATGA	2 cut(s)	355, 768
BspLI	GGNNCC	2 cut(s)	241, 519
BspOI	GCTAGC	1 cut(s)	1185
BspPI	GGATC	2 cut(s)	22, 1210
BspT104I	TTCGAA	1 cut(s)	962
BspTI	CTTAAG	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	619, 949
BssECI	CCNNGG	6 cut(s)	241, 304, 336, 481, 522, 662
BssMI	GATC	3 cut(s)	27, 412, 1215
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	5 cut(s)	446, 483, 515, 664, 870
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	259
BstAFI	CTTAAG	1 cut(s)	838
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	962
BstC8I	GCNNGC	5 cut(s)	866, 890, 1084, 1131, 1183
BstDEI	CTNAG	3 cut(s)	12, 924, 1220
BstDSI	CCRYGG	2 cut(s)	304, 522
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	577, 751
BstKTI	GATC	3 cut(s)	30, 415, 1218
BstMAI	GTCTC	2 cut(s)	261, 1089
BstMBI	GATC	3 cut(s)	27, 412, 1215
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 246, 870, 1076, 1088
BstNI	CCWGG	5 cut(s)	446, 483, 515, 664, 870
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	7 cut(s)	58, 241, 444, 481, 513, 662, 868
BstSFI	CTRYAG	1 cut(s)	1176
BstV1I	GCAGC	4 cut(s)	873, 1180, 1183, 1211
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	2 cut(s)	27, 1215
BstYI	RGATCY	2 cut(s)	27, 1215
BstZI	CGGCCG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	240, 249, 618, 873
BtgI	CCRYGG	2 cut(s)	304, 522
BtgZI	GCGATG	1 cut(s)	907
BtsCI	GGATG	2 cut(s)	577, 751
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	5 cut(s)	866, 890, 1084, 1131, 1183
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	2 cut(s)	355, 768
CciNI	GCGGCCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	7 cut(s)	253, 305, 356, 487, 756, 769, 1015
DdeI	CTNAG	3 cut(s)	12, 924, 1220
DpnI	GATC	3 cut(s)	29, 414, 1217
DpnII	GATC	3 cut(s)	27, 412, 1215
DraI	TTTAAA	1 cut(s)	705
EaeI	YGGCCR	3 cut(s)	247, 616, 871
EagI	CGGCCG	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	522, 850
Eco52I	CGGCCG	1 cut(s)	247
Eco57I	CTGAAG	3 cut(s)	852, 935, 1008
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	5 cut(s)	444, 481, 513, 662, 868
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	522, 850
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	1089
FaeI	CATG	7 cut(s)	256, 308, 359, 490, 759, 772, 1018
FaqI	GGGAC	1 cut(s)	1032
FatI	CATG	7 cut(s)	252, 304, 355, 486, 755, 768, 1014
Fnu4HI	GCNGC	7 cut(s)	247, 250, 862, 1080, 1194, 1197, 1225
FokI	GGATG	2 cut(s)	584, 738
FriOI	GRGCYC	2 cut(s)	522, 850
Fsp4HI	GCNGC	7 cut(s)	247, 250, 862, 1080, 1194, 1197, 1225
FspBI	CTAG	4 cut(s)	566, 653, 885, 1182
GluI	GCNGC	7 cut(s)	247, 250, 862, 1080, 1194, 1197, 1225
GsaI	CCCAGC	1 cut(s)	847
HaeIII	GGCC	4 cut(s)	240, 249, 618, 873
HapII	CCGG	2 cut(s)	59, 243
Hin1II	CATG	7 cut(s)	256, 308, 359, 490, 759, 772, 1018
HinfI	GANTC	2 cut(s)	227, 365
HpaII	CCGG	2 cut(s)	59, 243
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	5 cut(s)	601, 784, 832, 927, 954
Hpy188III	TCNNGA	6 cut(s)	171, 356, 698, 716, 769, 1045
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	6 cut(s)	79, 83, 280, 443, 814, 1163
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	185, 501, 638, 904, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 246, 870, 1076, 1088
HpyF3I	CTNAG	3 cut(s)	12, 924, 1220
Hsp92II	CATG	7 cut(s)	256, 308, 359, 490, 759, 772, 1018
Kzo9I	GATC	3 cut(s)	27, 412, 1215
LmnI	GCTCC	4 cut(s)	173, 289, 316, 517
Lsp1109I	GCAGC	4 cut(s)	873, 1180, 1183, 1211
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	4 cut(s)	566, 653, 885, 1182
MaeIII	GTNAC	4 cut(s)	214, 379, 676, 854
MalI	GATC	3 cut(s)	29, 414, 1217
MboI	GATC	3 cut(s)	27, 412, 1215
MboII	GAAGA	4 cut(s)	276, 290, 696, 1001
MflI	RGATCY	2 cut(s)	27, 1215
MhlI	GDGCHC	3 cut(s)	313, 522, 850
MlsI	TGGCCA	1 cut(s)	618
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	55, 447
MnlI	CCTC	8 cut(s)	230, 331, 449, 562, 705, 892, 1119, 1229
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	1224
MspCI	CTTAAG	1 cut(s)	838
MspI	CCGG	2 cut(s)	59, 243
MspR9I	CCNGG	7 cut(s)	60, 243, 446, 483, 515, 664, 870
Mva1269I	GAATGC	2 cut(s)	904, 970
MvaI	CCWGG	5 cut(s)	446, 483, 515, 664, 870
MwoI	GCNNNNNNNGC	5 cut(s)	182, 246, 870, 1076, 1088
NciI	CCSGG	2 cut(s)	60, 243
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	27, 412, 1215
NheI	GCTAGC	1 cut(s)	1181
NlaIII	CATG	7 cut(s)	256, 308, 359, 490, 759, 772, 1018
NlaIV	GGNNCC	2 cut(s)	241, 519
NmuCI	GTSAC	1 cut(s)	854
NotI	GCGGCCGC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	962
PagI	TCATGA	2 cut(s)	355, 768
PctI	GAATGC	2 cut(s)	904, 970
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	248, 251, 863, 1081, 1195, 1198, 1226
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	455
Psp6I	CCWGG	5 cut(s)	444, 481, 513, 662, 868
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	5 cut(s)	444, 481, 513, 662, 868
PspN4I	GGNNCC	2 cut(s)	241, 519
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	27, 1215
PvuII	CAGCTG	1 cut(s)	1224
SatI	GCNGC	7 cut(s)	247, 250, 862, 1080, 1194, 1197, 1225
Sau3AI	GATC	3 cut(s)	27, 412, 1215
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	7 cut(s)	60, 243, 446, 483, 515, 664, 870
SduI	GDGCHC	3 cut(s)	313, 522, 850
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	1176
SfiI	GGCCNNNNNGGCC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	962
SmiI	ATTTAAAT	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
SsiI	CCGC	6 cut(s)	149, 246, 250, 725, 1080, 1185
SspI	AATATT	1 cut(s)	1027
SspMI	CTAG	4 cut(s)	566, 653, 885, 1182
StyD4I	CCNGG	7 cut(s)	58, 241, 444, 481, 513, 662, 868
StyI	CCWWGG	1 cut(s)	304
SwaI	ATTTAAAT	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	3 cut(s)	225, 441, 962
TaqII	GACCGA	1 cut(s)	335
TauI	GCSGC	3 cut(s)	249, 252, 1082
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	4 cut(s)	861, 1193, 1196, 1224
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	5 cut(s)	146, 344, 372, 503, 588
TspRI	CASTG	1 cut(s)	183
Vha464I	CTTAAG	1 cut(s)	838
VspI	ATTAAT	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	7 cut(s)	165, 398, 428, 490, 577, 706, 1004
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	4 cut(s)	566, 653, 885, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.