Rmu_sc0020999.1_g000001

NAD(P)-binding Rossmann-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020999.1
OG0008387
Physical Location & Seq
Forward (+)
1 .. 2090
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020999.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
gcagagaaaatgttgaagacgggaaggagctattgtttgaccatggtgctccgtttttcactgccaacaacaccgaggttctgagtcttgtccatgagtgggaatcaaagggtctggcagctatctgggaagagaaatttggttcttttgatcgcacgtcgaacaaatttgttgacctagaacaggaaggattaataagtaagagatatctgggtatcccagggatgaattctgtgtgcagagcattatgccgtgagcctggtgttgaaagtaagtttgggacaagtgttggaagattggagtggctagaggatcaaaatttgtggtcattgattggtttggatggacaaaatcttggtcagtttaagggagtggttgcaacagacaaaaacatagtttcacccaggtttacaagtgttacaggaaaaccactacctcttgatttgaaattatttccagagttagcagttaagttgaatgacattcctgttcgtccgtgctttgctctaatgatagcctttgcagaacctctgacatcgataccctttaaaggcttctcaataaaaaattctgaagttttaagctgggctcattgtgatagcagcaagcctggccgttctacctctaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

209

Amino Acids

23.22

Weight (kDa)

5.72

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 5 cut(s) 136, 166, 228, 318, 567
AcuI CTGAAG 1 cut(s) 593
AfiI CCNNNNNNNGG 3 cut(s) 99, 183, 550
AgsI TTSAA 4 cut(s) 16, 268, 447, 477
AjiI CACGTC 1 cut(s) 158
AjnI CCWGG 4 cut(s) 219, 258, 403, 609
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 260, 292
AluBI AGCT 3 cut(s) 30, 121, 584
AluI AGCT 3 cut(s) 30, 121, 584
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 320
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 118, 602
ApoI RAATTY 5 cut(s) 136, 166, 228, 318, 567
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AseI ATTAAT 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 130, 614
BccI CCATC 1 cut(s) 337
BceAI ACGGC 2 cut(s) 236, 599
BciT130I CCWGG 4 cut(s) 221, 260, 405, 611
BciVI GTATCC 1 cut(s) 226
BfaI CTAG 3 cut(s) 178, 307, 626
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 2 cut(s) 119, 603
BlsI GCNGC 2 cut(s) 120, 604
Bme1390I CCNGG 4 cut(s) 221, 260, 405, 611
BmgBI CACGTC 1 cut(s) 158
BmrFI CCNGG 4 cut(s) 221, 260, 405, 611
BpiI GAAGAC 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 538
BsaJI CCNNGG 5 cut(s) 42, 74, 219, 220, 403
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 183, 550
BseBI CCWGG 4 cut(s) 221, 260, 405, 611
BseCI ATCGAT 1 cut(s) 538
BseDI CCNNGG 5 cut(s) 42, 74, 219, 220, 403
BseGI GGATG 2 cut(s) 230, 348
BseLI CCNNNNNNNGG 3 cut(s) 99, 183, 550
BseMII CTCAG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 130, 614
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 51
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 99, 183, 550
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 51, 591
Bsp143I GATC 2 cut(s) 150, 312
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 538
BspPI GGATC 1 cut(s) 320
BssECI CCNNGG 5 cut(s) 42, 74, 219, 220, 403
BssMI GATC 2 cut(s) 150, 312
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 4 cut(s) 221, 260, 405, 611
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 181
BstF5I GGATG 2 cut(s) 230, 348
BstKTI GATC 2 cut(s) 153, 315
BstMBI GATC 2 cut(s) 150, 312
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 4 cut(s) 221, 260, 405, 611
BstSCI CCNGG 4 cut(s) 219, 258, 403, 609
BstV1I GCAGC 2 cut(s) 130, 614
BstV2I GAAGAC 1 cut(s) 23
Bsu15I ATCGAT 1 cut(s) 538
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 614
BsuTUI ATCGAT 1 cut(s) 538
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 230, 348
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 607
ClaI ATCGAT 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 2 cut(s) 43, 94
DdeI CTNAG 1 cut(s) 82
DpnI GATC 2 cut(s) 152, 314
DpnII GATC 2 cut(s) 150, 312
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 591
Eco32I GATATC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 4 cut(s) 219, 258, 403, 609
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 46, 97
FaiI YATR 4 cut(s) 44, 95, 249, 394
FaqI GGGAC 1 cut(s) 294
FatI CATG 2 cut(s) 42, 93
Fnu4HI GCNGC 2 cut(s) 119, 603
FokI GGATG 2 cut(s) 237, 355
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 2 cut(s) 119, 603
FspBI CTAG 3 cut(s) 178, 307, 626
GluI GCNGC 2 cut(s) 119, 603
GsaI CCCAGC 1 cut(s) 588
HaeIII GGCC 1 cut(s) 614
Hin1II CATG 2 cut(s) 46, 97
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 2 cut(s) 84, 103
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 174, 410
Hpy188I TCNGA 3 cut(s) 83, 533, 573
Hpy188III TCNNGA 2 cut(s) 439, 457
Hpy8I GTNNAC 2 cut(s) 174, 410
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 18, 181
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 239, 379, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 46, 97
Kzo9I GATC 2 cut(s) 150, 312
LmnI GCTCC 2 cut(s) 27, 54
Lsp1109I GCAGC 2 cut(s) 130, 614
MaeI CTAG 3 cut(s) 178, 307, 626
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 152, 314
MboI GATC 2 cut(s) 150, 312
MboII GAAGA 3 cut(s) 28, 142, 305
MhlI GDGCHC 2 cut(s) 51, 591
MluCI AATT 6 cut(s) 136, 166, 228, 318, 448, 567
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 69, 303, 446, 539
MseI TTAA 5 cut(s) 193, 365, 470, 548, 580
MspR9I CCNGG 4 cut(s) 221, 260, 405, 611
MvaI CCWGG 4 cut(s) 221, 260, 405, 611
MwoI GCNNNNNNNGC 1 cut(s) 611
NcoI CCATGG 1 cut(s) 42
NdeII GATC 2 cut(s) 150, 312
NlaIII CATG 2 cut(s) 46, 97
PasI CCCWGGG 1 cut(s) 220
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 120, 604
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 193
Psp6I CCWGG 4 cut(s) 219, 258, 403, 609
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 4 cut(s) 219, 258, 403, 609
SaqAI TTAA 5 cut(s) 193, 365, 470, 548, 580
SatI GCNGC 2 cut(s) 119, 603
Sau3AI GATC 2 cut(s) 150, 312
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 4 cut(s) 221, 260, 405, 611
SduI GDGCHC 2 cut(s) 51, 591
Sse9I AATT 6 cut(s) 136, 166, 228, 318, 448, 567
SspMI CTAG 3 cut(s) 178, 307, 626
StyD4I CCNGG 4 cut(s) 219, 258, 403, 609
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 160, 538
TasI AATT 6 cut(s) 136, 166, 228, 318, 448, 567
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 5 cut(s) 193, 365, 470, 548, 580
Tru9I TTAA 5 cut(s) 193, 365, 470, 548, 580
TscAI CASTG 1 cut(s) 66
TseI GCWGC 2 cut(s) 118, 602
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 2 cut(s) 41, 485
TspRI CASTG 1 cut(s) 66
VspI ATTAAT 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 181
XapI RAATTY 5 cut(s) 136, 166, 228, 318, 567
XspI CTAG 3 cut(s) 178, 307, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.