Rh5AG190300

NAD(P)-binding Rossmann-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008387
Physical Location & Seq
Reverse (-)
21935019 .. 21939646
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG190300.1

Sequence Viewer

Length: 984 bp
ATGTCTCAAAGAAGAGAAAATGTTGAAGACGGGAAGGAGCTATTGTTTGACCATGGTGCTCCGTTTTTCACTGCCAACAACACCGAGGTTCTGAGTCTTGTCCATGAGTGGGAATCAAAGGGTCTGGCAGCTATCTGGGAAGAGAAATTTGGTTCTTTTGATCGCACGTCGAACAAATTTGTTGACCTAGAACAGGAAGGATTAATAAGTAAGAGATATCTGGGTATCCCAGGGATGAATTCTGTGTGCAGAGCATTATGCCGTGAGCCTGGTGTTGAAAGTAAGTTTGGGACAAGTGTTGGAAGATTGGAGTGGCTAGAGGATCAAAATTTGTGGTCATTGATTGGTTTGGATGGACAAACTCTTGGTCAGTTTAAGGGAGTGGTTGCAACAGACAAAAACATAGTTTCACCCAGGTTTACAAGTGTTACAGGAAAACCACTACCTCTTGATTTGAAATTATTTCCAGAGTTAGCAGTTAAGTTGAATGACATTCCTGTTCGTCCGTGCTTTGCTCTAATGATAGCCTTTGCAGAACCTCTGACATCGATACCCTTTAAAGGCTTCTCAATAAAAAATTCTGAAGTTTTAAGCTGGGCTCATTGTGATAGCAGCAAGCCTGGCCGTTCTACCTCTAGTGAGCGATGGGTTCTGCATTCTACAATGGAGTATGCTCAGGGAATAATTGCTCAAACTGGACTTCAGAAGCTTTCAGATGCAACATTGACCAAAGTGGCTGAAGAACTATTCCAAGAATTACAAAGCCTGGGACTTAATATTTCACAGCCCTTTTTCAAGAAAGCTCATAGATGGGGAAGTGCTTTTCCAGCTACAAGCATAGCCAGAGAGGAGAAATGTCTTTGGGATGGGAACAAGAGGTTTGCCATCTGCGGTGATTTCTGTGTTAGTCCAGATGTTGAAGGTGCTATAGTTAGTGGCCTGGCCGCAGCTTCCAAACTTTCAGAGCTCTTCAGCTGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

327

Amino Acids

36.13

Weight (kDa)

5.69

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 891, 945
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 2 cut(s) 622, 942
AcsI RAATTY 5 cut(s) 146, 176, 238, 328, 577
AcuI CTGAAG 4 cut(s) 603, 686, 759, 955
AfiI CCNNNNNNNGG 3 cut(s) 109, 193, 560
AgsI TTSAA 6 cut(s) 26, 278, 457, 487, 796, 920
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 6 cut(s) 229, 268, 413, 619, 765, 939
AjuI GAANNNNNNNTTGG 4 cut(s) 132, 164, 270, 302
AluBI AGCT 9 cut(s) 40, 131, 594, 709, 803, 830, 950, 967, 975
AluI AGCT 9 cut(s) 40, 131, 594, 709, 803, 830, 950, 967, 975
Alw21I GWGCWC 2 cut(s) 61, 969
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 622, 937, 942
ApeKI GCWGC 4 cut(s) 128, 612, 947, 975
ApoI RAATTY 5 cut(s) 146, 176, 238, 328, 577
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AseI ATTAAT 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 402, 905
BanII GRGCYC 2 cut(s) 601, 969
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 61, 969
BbvI GCAGC 4 cut(s) 140, 624, 959, 962
BccI CCATC 5 cut(s) 347, 639, 804, 860, 893
BceAI ACGGC 2 cut(s) 246, 609
BciT130I CCWGG 6 cut(s) 231, 270, 415, 621, 767, 941
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 188, 317, 636
BfmI CTRYAG 1 cut(s) 927
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 5 cut(s) 129, 613, 945, 948, 976
BlsI GCNGC 5 cut(s) 130, 614, 946, 949, 977
Bme1390I CCNGG 6 cut(s) 231, 270, 415, 621, 767, 941
BmgBI CACGTC 1 cut(s) 168
BmrFI CCNGG 6 cut(s) 231, 270, 415, 621, 767, 941
BmsI GCATC 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 675
Bsa29I ATCGAT 1 cut(s) 548
BsaJI CCNNGG 6 cut(s) 52, 84, 229, 230, 413, 766
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 193, 560
Bse1I ACTGG 1 cut(s) 700
BseBI CCWGG 6 cut(s) 231, 270, 415, 621, 767, 941
BseCI ATCGAT 1 cut(s) 548
BseDI CCNNGG 6 cut(s) 52, 84, 229, 230, 413, 766
BseGI GGATG 3 cut(s) 240, 358, 871
BseLI CCNNNNNNNGG 3 cut(s) 109, 193, 560
BseMII CTCAG 2 cut(s) 83, 689
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 4 cut(s) 140, 624, 959, 962
BseYI CCCAGC 1 cut(s) 594
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 3 cut(s) 624, 939, 944
BshVI ATCGAT 1 cut(s) 548
BsiHKAI GWGCWC 2 cut(s) 61, 969
BslFI GGGAC 2 cut(s) 304, 783
BslI CCNNNNNNNGG 3 cut(s) 109, 193, 560
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 304, 783
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 3 cut(s) 624, 939, 944
Bsp1286I GDGCHC 3 cut(s) 61, 601, 969
Bsp143I GATC 2 cut(s) 160, 322
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 2 cut(s) 891, 945
BspANI GGCC 3 cut(s) 624, 939, 944
BspCNI CTCAG 2 cut(s) 84, 688
BspDI ATCGAT 1 cut(s) 548
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 974
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 6 cut(s) 52, 84, 229, 230, 413, 766
BssMI GATC 2 cut(s) 160, 322
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 6 cut(s) 231, 270, 415, 621, 767, 941
Bst6I CTCTTC 3 cut(s) 7, 135, 974
BstC8I GCNNGC 1 cut(s) 617
BstDEI CTNAG 2 cut(s) 92, 675
BstDSI CCRYGG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 240, 358, 871
BstKTI GATC 2 cut(s) 163, 325
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 160, 322
BstMWI GCNNNNNNNGC 2 cut(s) 621, 827
BstNI CCWGG 6 cut(s) 231, 270, 415, 621, 767, 941
BstSCI CCNGG 6 cut(s) 229, 268, 413, 619, 765, 939
BstSFI CTRYAG 1 cut(s) 927
BstV1I GCAGC 4 cut(s) 140, 624, 959, 962
BstV2I GAAGAC 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 548
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 3 cut(s) 624, 939, 944
BsuTUI ATCGAT 1 cut(s) 548
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 658
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 3 cut(s) 240, 358, 871
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 548
CspCI CAANNNNNGTGG 2 cut(s) 314, 349
CviAII CATG 2 cut(s) 53, 104
DdeI CTNAG 2 cut(s) 92, 675
DpnI GATC 2 cut(s) 162, 324
DpnII GATC 2 cut(s) 160, 322
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 622, 942
Eam1104I CTCTTC 3 cut(s) 7, 135, 974
EarI CTCTTC 3 cut(s) 7, 135, 974
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 601, 969
Eco32I GATATC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 4 cut(s) 603, 686, 759, 955
EcoICRI GAGCTC 1 cut(s) 967
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 6 cut(s) 229, 268, 413, 619, 765, 939
EcoRV GATATC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 601, 969
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 56, 107
FaiI YATR 9 cut(s) 54, 105, 259, 404, 672, 807, 839, 929, 982
FaqI GGGAC 2 cut(s) 304, 783
FatI CATG 2 cut(s) 52, 103
Fnu4HI GCNGC 5 cut(s) 129, 613, 945, 948, 976
FokI GGATG 3 cut(s) 247, 365, 878
FriOI GRGCYC 2 cut(s) 601, 969
Fsp4HI GCNGC 5 cut(s) 129, 613, 945, 948, 976
FspBI CTAG 3 cut(s) 188, 317, 636
GluI GCNGC 5 cut(s) 129, 613, 945, 948, 976
GsaI CCCAGC 1 cut(s) 598
HaeIII GGCC 3 cut(s) 624, 939, 944
Hin1II CATG 2 cut(s) 56, 107
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 2 cut(s) 94, 113
HphI GGTGA 2 cut(s) 402, 905
Hpy166II GTNNAC 2 cut(s) 184, 420
Hpy188I TCNGA 6 cut(s) 93, 543, 583, 705, 715, 964
Hpy188III TCNNGA 4 cut(s) 449, 467, 796, 911
Hpy8I GTNNAC 2 cut(s) 184, 420
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 28, 191, 914
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 5 cut(s) 249, 389, 533, 655, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 621, 827
HpyF3I CTNAG 2 cut(s) 92, 675
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 2 cut(s) 56, 107
Kzo9I GATC 2 cut(s) 160, 322
LguI GCTCTTC 1 cut(s) 974
LmnI GCTCC 2 cut(s) 37, 64
Lsp1109I GCAGC 4 cut(s) 140, 624, 959, 962
LweI GCATC 1 cut(s) 706
MaeI CTAG 3 cut(s) 188, 317, 636
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 162, 324
MboI GATC 2 cut(s) 160, 322
MboII GAAGA 6 cut(s) 24, 38, 152, 315, 752, 961
MhlI GDGCHC 3 cut(s) 61, 601, 969
MluCI AATT 8 cut(s) 146, 176, 238, 328, 458, 577, 684, 755
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 7 cut(s) 79, 313, 456, 549, 643, 841, 870
MseI TTAA 6 cut(s) 203, 375, 480, 558, 590, 774
MspA1I CMGCKG 1 cut(s) 975
MspR9I CCNGG 6 cut(s) 231, 270, 415, 621, 767, 941
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 6 cut(s) 231, 270, 415, 621, 767, 941
MwoI GCNNNNNNNGC 2 cut(s) 621, 827
NcoI CCATGG 1 cut(s) 52
NdeII GATC 2 cut(s) 160, 322
NlaIII CATG 2 cut(s) 56, 107
PasI CCCWGGG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 974
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 5 cut(s) 130, 614, 946, 949, 977
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 969
Psp6I CCWGG 6 cut(s) 229, 268, 413, 619, 765, 939
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 6 cut(s) 229, 268, 413, 619, 765, 939
PvuII CAGCTG 1 cut(s) 975
SacI GAGCTC 1 cut(s) 969
SapI GCTCTTC 1 cut(s) 974
SaqAI TTAA 6 cut(s) 203, 375, 480, 558, 590, 774
SatI GCNGC 5 cut(s) 129, 613, 945, 948, 976
Sau3AI GATC 2 cut(s) 160, 322
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 6 cut(s) 231, 270, 415, 621, 767, 941
SduI GDGCHC 3 cut(s) 61, 601, 969
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 1 cut(s) 927
Sse9I AATT 8 cut(s) 146, 176, 238, 328, 458, 577, 684, 755
SsiI CCGC 2 cut(s) 891, 945
SspI AATATT 1 cut(s) 778
SspMI CTAG 3 cut(s) 188, 317, 636
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 6 cut(s) 229, 268, 413, 619, 765, 939
StyI CCWWGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 170, 548
TasI AATT 8 cut(s) 146, 176, 238, 328, 458, 577, 684, 755
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 6 cut(s) 203, 375, 480, 558, 590, 774
Tru9I TTAA 6 cut(s) 203, 375, 480, 558, 590, 774
TscAI CASTG 1 cut(s) 76
TseI GCWGC 4 cut(s) 128, 612, 947, 975
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 2 cut(s) 51, 495
TspRI CASTG 1 cut(s) 76
VspI ATTAAT 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 5 cut(s) 146, 176, 238, 328, 577
XspI CTAG 3 cut(s) 188, 317, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.