Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008387

Physical Location & Seq

Genomic Coordinates Reverse (-)

8244955 .. 8249331

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G143800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATTATGAATAGCACTAAGGTTGCTGTGGTGGGAAGTGGAATTTCAGGAGCAGTCTGTGCATCAAATCTTGCCAGAAATGGAGTATCTGTGACATTGTTCGAGTCTGCCAGAGGCCCTGGTGGCCGCATGTCTCAAAGAAGAGAAGTTGCTGAAGATGGGAAGGAGCTATTGTTTGACCATGGTGCTCCATTTTTCAATGCCAACAACACTGAGGTTCTGGGTCTTGTTCGTGAATGGGAAGCAAAGGGTCTTGTTGCTTGCTGGAGAGAGAAATTTGGGTGTTTTGATCGTGTTTCCAACAAATTTGTGGACCTAGAACAGGAAGGATTAATAAGTAAGAGATATGTGGGTATCCCAGGCATGAACTCTGTATGTAGAGCATTGTGCCACGAGCCTGGAGTGGAAAGTAAGTTTGGAGTGAGTGTTGGGAGATTGGAATGGCTAGAGGATGAGAATTTGTGGTCGTTGATTGGTTTAGATGGGCAAAATCTTGGCCAGTTTAAGGGAGTAGTTGCAACAGACAAAAACGTTGTTTCGCCCAGGTTTACAAGTGTTACAGGGAGACCACCACCTCTTGATTTAAATTTGGTTACAGAATTGGCGGTTAAGTTGAATGATATTCCTGTCCGCCCATGCTTTGCTCTCATGATAGCATTTGCAGAGCCTCTGTCATCAATACCCTTTAAAGGCTTCTCAATAAAAAATTCTGAAGTTCTAAGCTGGGCTCATTGTGACAGCAGCAAGCCTGGCCGTTCCACCTCTAGTGAGCGATGGGTTTTGCATTCAACAATGGAGTATGCTCAGACTATAATTGCTCAAACTGGACTTCAGAAACCTTCAAATGCAACATTGACAAAAGTGGCTGAAGAACTCTTCCAAGAATTACAAAGCATGGGACTTAATATCTCACAGCCCCTTTTCAAGAAAGCTCATAGATGGTATGCGATACCTTTGGATTTTGTTGACAGGGGAGCTGCTTTTCCAGCTACAAGCATAGCCAGAGAGGAGAAATGCCTTTGGGATAAGAACAAGAGGCTTGCCATCTGTGGTGATTTCTGTGTTAGTCCAGATGTTGAAGGTGCTATAGTTAGTGGCATAGCTGCAGCTTCAAAACTTACAGATGTCCTCAGCTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

381

Amino Acids

41.42

Weight (kDa)

6.55

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55980 AT1G55980 AT1G55980 AT1G56000 AT1G56000
fragaria_vesca	FvH4_3g16060
malus_domestica	MD05G1215100.v1.1
prunus_persica	Prupe.4G143800_v2.0.a1 Prupe.4G143800_v2.0.a1
pyrus_communis	pycom05g19810
rosa_chinensis	RchiOBHm_Chr5g0027031
rosa_laevigata	RLG00000032980 RLG00000032984
rosa_multiflora	Rmu_sc0000882.1_g000020 Rmu_sc0020999.1_g000001 Rmu_sc0021000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052460
rosa_rugosa	Rorug05G0096700
rosa_samantha	Rh5AG190300 Rh5BG187900 Rh5CG207700 Rh5DG189700
rosa_wichuraiana	Rw5G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	127, 605, 631
AclI	AACGTT	1 cut(s)	531
AcoI	YGGCCR	3 cut(s)	124, 496, 751
AcsI	RAATTY	6 cut(s)	42, 275, 305, 457, 586, 706
AcuI	CTGAAG	4 cut(s)	174, 732, 815, 888
AfiI	CCNNNNNNNGG	3 cut(s)	322, 505, 689
AgsI	TTSAA	7 cut(s)	199, 616, 789, 843, 925, 1079, 1113
AjnI	CCWGG	5 cut(s)	118, 358, 397, 542, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	8 cut(s)	169, 723, 932, 977, 989, 1103, 1109, 1134
AluI	AGCT	8 cut(s)	169, 723, 932, 977, 989, 1103, 1109, 1134
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	2 cut(s)	138, 559
AoxI	GGCC	4 cut(s)	115, 124, 496, 751
ApeKI	GCWGC	5 cut(s)	741, 977, 1103, 1106, 1134
ApoI	RAATTY	6 cut(s)	42, 275, 305, 457, 586, 706
AseI	ATTAAT	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	116, 313
AsuHPI	GGTGA	1 cut(s)	1064
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	730
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	1130
BbvI	GCAGC	5 cut(s)	753, 964, 1090, 1118, 1121
BccI	CCATC	5 cut(s)	152, 476, 768, 933, 1052
BceAI	ACGGC	1 cut(s)	738
BciT130I	CCWGG	5 cut(s)	120, 360, 399, 544, 750
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	138, 559
BfaI	CTAG	3 cut(s)	317, 446, 765
BfmI	CTRYAG	2 cut(s)	1086, 1104
BfuI	GTATCC	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	6 cut(s)	127, 742, 978, 1104, 1107, 1135
BlsI	GCNGC	6 cut(s)	128, 743, 979, 1105, 1108, 1136
Bme1390I	CCNGG	5 cut(s)	120, 360, 399, 544, 750
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	116, 313
BmrFI	CCNGG	5 cut(s)	120, 360, 399, 544, 750
BmsI	GCATC	1 cut(s)	71
BpmI	CTGGAG	2 cut(s)	286, 420
Bpu10I	CCTNAGC	1 cut(s)	1130
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	4 cut(s)	118, 181, 358, 542
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 158, 188, 411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 505, 689
Bse1I	ACTGG	2 cut(s)	499, 829
BseBI	CCWGG	5 cut(s)	120, 360, 399, 544, 750
BseDI	CCNNGG	4 cut(s)	118, 181, 358, 542
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	322, 505, 689
BseMII	CTCAG	2 cut(s)	204, 818
BseNI	ACTGG	2 cut(s)	499, 829
BseRI	GAGGAG	1 cut(s)	1022
BseXI	GCAGC	5 cut(s)	753, 964, 1090, 1118, 1121
BseYI	CCCAGC	1 cut(s)	723
BshFI	GGCC	4 cut(s)	117, 126, 498, 753
BsiHKAI	GWGCWC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	912
BslI	CCNNNNNNNGG	3 cut(s)	322, 505, 689
BsmAI	GTCTC	2 cut(s)	138, 559
BsmFI	GGGAC	1 cut(s)	912
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	117, 126, 498, 753
Bso31I	GGTCTC	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	190, 730
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	3 cut(s)	127, 605, 631
BspANI	GGCC	4 cut(s)	117, 126, 498, 753
BspCNI	CTCAG	3 cut(s)	205, 817, 1143
BspHI	TCATGA	1 cut(s)	648
BspMAI	CTGCAG	1 cut(s)	1108
BspTNI	GGTCTC	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	499, 829
BssECI	CCNNGG	4 cut(s)	118, 181, 358, 542
BssMI	GATC	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	5 cut(s)	120, 360, 399, 544, 750
Bst6I	CTCTTC	2 cut(s)	136, 881
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	262, 746, 1041
BstDEI	CTNAG	5 cut(s)	18, 213, 719, 804, 1130
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	138, 559
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 123, 750, 986
BstNI	CCWGG	5 cut(s)	120, 360, 399, 544, 750
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	5 cut(s)	118, 358, 397, 542, 748
BstSFI	CTRYAG	2 cut(s)	1086, 1104
BstV1I	GCAGC	5 cut(s)	753, 964, 1090, 1118, 1121
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	117, 126, 498, 753
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	262, 746, 1041
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	2 cut(s)	116, 313
CviAII	CATG	6 cut(s)	130, 182, 364, 636, 649, 895
DdeI	CTNAG	5 cut(s)	18, 213, 719, 804, 1130
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraI	TTTAAA	2 cut(s)	585, 688
EaeI	YGGCCR	3 cut(s)	124, 496, 751
Eam1104I	CTCTTC	2 cut(s)	136, 881
EarI	CTCTTC	2 cut(s)	136, 881
EciI	GGCGGA	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	4 cut(s)	174, 732, 815, 888
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	5 cut(s)	118, 358, 397, 542, 748
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	6 cut(s)	133, 185, 367, 639, 652, 898
FaqI	GGGAC	1 cut(s)	912
FatI	CATG	6 cut(s)	129, 181, 363, 635, 648, 894
Fnu4HI	GCNGC	6 cut(s)	127, 742, 978, 1104, 1107, 1135
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	6 cut(s)	127, 742, 978, 1104, 1107, 1135
FspBI	CTAG	3 cut(s)	317, 446, 765
GluI	GCNGC	6 cut(s)	127, 742, 978, 1104, 1107, 1135
GsaI	CCCAGC	1 cut(s)	727
GsuI	CTGGAG	2 cut(s)	286, 420
HaeIII	GGCC	4 cut(s)	117, 126, 498, 753
Hin1II	CATG	6 cut(s)	133, 185, 367, 639, 652, 898
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	3 cut(s)	313, 549, 967
Hpy188I	TCNGA	3 cut(s)	712, 807, 834
Hpy188III	TCNNGA	6 cut(s)	48, 233, 578, 649, 925, 1070
Hpy8I	GTNNAC	3 cut(s)	313, 549, 967
HpyAV	CCTTC	4 cut(s)	157, 320, 849, 1073
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	6 cut(s)	62, 518, 662, 784, 848, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 123, 750, 986
HpyF3I	CTNAG	5 cut(s)	18, 213, 719, 804, 1130
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	133, 185, 367, 639, 652, 898
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	4 cut(s)	50, 166, 193, 974
Lsp1109I	GCAGC	5 cut(s)	753, 964, 1090, 1118, 1121
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	317, 446, 765
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	4 cut(s)	91, 556, 592, 734
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	153, 167, 868, 881
MhlI	GDGCHC	2 cut(s)	190, 730
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	9 cut(s)	42, 275, 305, 457, 586, 599, 706, 813, 884
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	107, 208, 442, 585, 678, 772, 1000, 1029, 1139
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	6 cut(s)	332, 504, 584, 609, 687, 903
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	1134
MspR9I	CCNGG	5 cut(s)	120, 360, 399, 544, 750
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	5 cut(s)	120, 360, 399, 544, 750
MwoI	GCNNNNNNNGC	4 cut(s)	59, 123, 750, 986
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	6 cut(s)	133, 185, 367, 639, 652, 898
NmuCI	GTSAC	2 cut(s)	91, 734
NspI	RCATGY	1 cut(s)	133
PagI	TCATGA	1 cut(s)	648
PctI	GAATGC	1 cut(s)	784
PkrI	GCNGC	6 cut(s)	128, 743, 979, 1105, 1108, 1136
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	5 cut(s)	118, 358, 397, 542, 748
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	5 cut(s)	118, 358, 397, 542, 748
PspPI	GGNCC	2 cut(s)	116, 313
PstI	CTGCAG	1 cut(s)	1108
PvuII	CAGCTG	1 cut(s)	1134
SaqAI	TTAA	6 cut(s)	332, 504, 584, 609, 687, 903
SatI	GCNGC	6 cut(s)	127, 742, 978, 1104, 1107, 1135
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	116, 313
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	5 cut(s)	120, 360, 399, 544, 750
SduI	GDGCHC	2 cut(s)	190, 730
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	2 cut(s)	1086, 1104
SfiI	GGCCNNNNNGGCC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	313
SmiI	ATTTAAAT	1 cut(s)	585
Sse9I	AATT	9 cut(s)	42, 275, 305, 457, 586, 599, 706, 813, 884
SsiI	CCGC	3 cut(s)	127, 605, 631
SspMI	CTAG	3 cut(s)	317, 446, 765
StyD4I	CCNGG	5 cut(s)	118, 358, 397, 542, 748
StyI	CCWWGG	1 cut(s)	181
SwaI	ATTTAAAT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	102
TasI	AATT	9 cut(s)	42, 275, 305, 457, 586, 599, 706, 813, 884
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	6 cut(s)	332, 504, 584, 609, 687, 903
Tru9I	TTAA	6 cut(s)	332, 504, 584, 609, 687, 903
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	91, 734
TseI	GCWGC	5 cut(s)	741, 977, 1103, 1106, 1134
Tsp45I	GTSAC	2 cut(s)	91, 734
TspDTI	ATGAA	2 cut(s)	23, 380
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	6 cut(s)	42, 275, 305, 457, 586, 706
XceI	RCATGY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	3 cut(s)	317, 446, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.