Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008387

Physical Location & Seq

Genomic Coordinates Forward (+)

73231306 .. 73235612

Gene Structure 4307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAAGGCACTAAGGTTGCAGTGGTGGGAAGTGGAAGAGCTGTGTGCGCATCAAGTCTTGCCAGAAATGGACTCTCTGTAACACTGTTCGAGTCTGCTAGAGGCCCAGGTGGCCGCATGTCTCAAAGAAGAGAAAATGTTGAAGACGGGAAGGAGCTATTGTTTGACCATGGTGCTCCGTTTTTCACTGCCAACAACACCGAGGTTCTGAGTCTTGTCCATGAGTGGGAATCGAAGGGTCTGGCAGCTATCTGGAAAGAGAAATTTGGTTCTTTTGATCGCACGTCGAACAAATTTGTTGACCTAGAACAGGAAGGATTAATAAGTAAGAGATATGTGGGTATCCCAGGGATGAATTCTGTGTGCAGAGCATTATGCCGTGAGCCTGGTGTTGAAAGTAAGTTTGGGACAAGTGTTGGAAGATTGGAGTGGCTAGAGGATCAAAATTTGTGGTCATTGATTGGTTTGGATGGACAAAATCTTGGTCAGTTTAAGGGAGTGGTTGCAACAGACAAAAACATAGTTTCACCCAGGTTTACAAGTGTTACAGGAAAACCACTACCTCTTGGTAGAGATGCTACAACAATTCCACTTGGCAAAACATTTGATTTGAAATTATTTCCAGAGTTAGCAGTTAAGTTGAATGACATTCCTGTTCGTCCGTGCTTTGCTCTAATGATAGCCTTTGCAGAACCTCTGACATCGATACCCTTTAAAGGCTTCTCAATAAAAAATTCTGAAGTTTTAAGCTGGGCTCATTGTGACAGCAGCAAGCCTGGCCGTTCTACCTCTAGTGAGCGATGGGTTCTGCATTCTACAATGGAGTATGGTCAGAGAATAATTGCTCAAACTGGACTTCAGAAGCTTTCAGATGCAACATTGACCAAAGTGGCTGAAGAACTATTCCAAGAATTTCAAAGCCTGGGACTTAATATTTCACAGCCCTTTTTCAAGAAAGCTCATAGATGGGGAAGTGCTTTTCCAGCTACAAGCATAGCCAGAGAGGAGAAATGTCTTTGGGATGGGAACAAGAGGTTTGCCATCTGCGGTGATTTCTGTGTTAGTCCAGATGTTGAAGGTGCTATAGTTAGTGGCCTGGCTGCAGCTTCCAAACTTTCAGAGCTCTTCAGCTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

379

Amino Acids

41.44

Weight (kDa)

8.51

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_8	PF13450	8 - 75	2.9e-09	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	15 - 75	1.4e-06	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55980 AT1G55980 AT1G55980 AT1G56000 AT1G56000
fragaria_vesca	FvH4_3g16060
malus_domestica	MD05G1215100.v1.1
prunus_persica	Prupe.4G143800_v2.0.a1 Prupe.4G143800_v2.0.a1
pyrus_communis	pycom05g19810
rosa_chinensis	RchiOBHm_Chr5g0027031
rosa_laevigata	RLG00000032980 RLG00000032984
rosa_multiflora	Rmu_sc0000882.1_g000020 Rmu_sc0020999.1_g000001 Rmu_sc0021000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052460
rosa_rugosa	Rorug05G0096700
rosa_samantha	Rh5AG190300 Rh5BG187900 Rh5CG207700 Rh5DG189700
rosa_wichuraiana	Rw5G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	49
AciI	CCGC	2 cut(s)	115, 1047
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	2 cut(s)	112, 778
AcsI	RAATTY	6 cut(s)	263, 293, 355, 445, 733, 911
AcuI	CTGAAG	4 cut(s)	759, 842, 915, 1111
AfiI	CCNNNNNNNGG	3 cut(s)	226, 310, 716
AgsI	TTSAA	7 cut(s)	143, 395, 613, 643, 917, 952, 1076
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
Alw21I	GWGCWC	2 cut(s)	178, 1125
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	4 cut(s)	103, 112, 778, 1093
ApeKI	GCWGC	5 cut(s)	245, 768, 1100, 1103, 1131
ApoI	RAATTY	6 cut(s)	263, 293, 355, 445, 733, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AseI	ATTAAT	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	519, 1061
BanII	GRGCYC	2 cut(s)	757, 1125
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	178, 1125
BbvI	GCAGC	5 cut(s)	257, 780, 1087, 1115, 1118
BccI	CCATC	5 cut(s)	464, 795, 960, 1016, 1049
BceAI	ACGGC	2 cut(s)	363, 765
BciT130I	CCWGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	4 cut(s)	99, 305, 434, 792
BfmI	CTRYAG	2 cut(s)	1083, 1101
BfuI	GTATCC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	115, 246, 769, 1101, 1104, 1132
BlsI	GCNGC	6 cut(s)	116, 247, 770, 1102, 1105, 1133
Bme1390I	CCNGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	104
BmrFI	CCNGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
BmsI	GCATC	3 cut(s)	59, 565, 862
BpiI	GAAGAC	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	704
BsaJI	CCNNGG	7 cut(s)	106, 169, 201, 346, 347, 530, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 310, 716
Bse1I	ACTGG	1 cut(s)	856
BseBI	CCWGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	7 cut(s)	106, 169, 201, 346, 347, 530, 922
BseGI	GGATG	3 cut(s)	357, 475, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	226, 310, 716
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	1 cut(s)	1019
BseXI	GCAGC	5 cut(s)	257, 780, 1087, 1115, 1118
BseYI	CCCAGC	1 cut(s)	750
BsgI	GTGCAG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	105, 114, 780, 1095
BshVI	ATCGAT	1 cut(s)	704
BsiHKAI	GWGCWC	2 cut(s)	178, 1125
BslFI	GGGAC	2 cut(s)	421, 939
BslI	CCNNNNNNNGG	3 cut(s)	226, 310, 716
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	421, 939
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	4 cut(s)	105, 114, 780, 1095
Bsp1286I	GDGCHC	3 cut(s)	178, 757, 1125
Bsp143I	GATC	2 cut(s)	277, 439
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	2 cut(s)	115, 1047
BspANI	GGCC	4 cut(s)	105, 114, 780, 1095
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	704
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	2 cut(s)	31, 1130
BsrI	ACTGG	1 cut(s)	856
BssECI	CCNNGG	7 cut(s)	106, 169, 201, 346, 347, 530, 922
BssMI	GATC	2 cut(s)	277, 439
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	3 cut(s)	31, 124, 1130
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	2 cut(s)	12, 209
BstDSI	CCRYGG	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	3 cut(s)	357, 475, 1027
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	280, 442
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	277, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 111, 777, 983
BstNI	CCWGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
BstSFI	CTRYAG	2 cut(s)	1083, 1101
BstV1I	GCAGC	5 cut(s)	257, 780, 1087, 1115, 1118
BstV2I	GAAGAC	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	4 cut(s)	105, 114, 780, 1095
BsuTUI	ATCGAT	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	814
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	357, 475, 1027
BtsI	GCAGTG	2 cut(s)	27, 186
BtsIMutI	CAGTG	3 cut(s)	27, 83, 186
Cac8I	GCNNGC	1 cut(s)	773
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	704
CspCI	CAANNNNNGTGG	2 cut(s)	431, 466
CviAII	CATG	3 cut(s)	118, 170, 221
DdeI	CTNAG	2 cut(s)	12, 209
DpnI	GATC	2 cut(s)	279, 441
DpnII	GATC	2 cut(s)	277, 439
DraI	TTTAAA	1 cut(s)	715
EaeI	YGGCCR	2 cut(s)	112, 778
Eam1104I	CTCTTC	3 cut(s)	31, 124, 1130
EarI	CTCTTC	3 cut(s)	31, 124, 1130
Ecl136II	GAGCTC	1 cut(s)	1123
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	757, 1125
Eco53kI	GAGCTC	1 cut(s)	1123
Eco57I	CTGAAG	4 cut(s)	759, 842, 915, 1111
EcoICRI	GAGCTC	1 cut(s)	1123
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	757, 1125
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	3 cut(s)	121, 173, 224
FaqI	GGGAC	2 cut(s)	421, 939
FatI	CATG	3 cut(s)	117, 169, 220
Fnu4HI	GCNGC	6 cut(s)	115, 246, 769, 1101, 1104, 1132
FokI	GGATG	3 cut(s)	364, 482, 1034
FriOI	GRGCYC	2 cut(s)	757, 1125
Fsp4HI	GCNGC	6 cut(s)	115, 246, 769, 1101, 1104, 1132
FspAI	RTGCGCAY	1 cut(s)	49
FspBI	CTAG	4 cut(s)	99, 305, 434, 792
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	6 cut(s)	115, 246, 769, 1101, 1104, 1132
GsaI	CCCAGC	1 cut(s)	754
HaeIII	GGCC	4 cut(s)	105, 114, 780, 1095
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	121, 173, 224
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	4 cut(s)	72, 92, 211, 230
HphI	GGTGA	2 cut(s)	519, 1061
Hpy166II	GTNNAC	2 cut(s)	301, 537
Hpy188I	TCNGA	7 cut(s)	210, 699, 739, 834, 861, 871, 1120
Hpy188III	TCNNGA	4 cut(s)	253, 623, 952, 1067
Hpy8I	GTNNAC	2 cut(s)	301, 537
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	4 cut(s)	145, 229, 308, 1070
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	7 cut(s)	20, 366, 506, 689, 811, 875, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 111, 777, 983
HpyF3I	CTNAG	2 cut(s)	12, 209
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	121, 173, 224
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	277, 439
LguI	GCTCTTC	2 cut(s)	31, 1130
LmnI	GCTCC	2 cut(s)	154, 181
Lsp1109I	GCAGC	5 cut(s)	257, 780, 1087, 1115, 1118
LweI	GCATC	3 cut(s)	59, 565, 862
MaeI	CTAG	4 cut(s)	99, 305, 434, 792
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	79, 544, 761
MalI	GATC	2 cut(s)	279, 441
MboI	GATC	2 cut(s)	277, 439
MboII	GAAGA	6 cut(s)	48, 141, 155, 432, 908, 1117
MhlI	GDGCHC	3 cut(s)	178, 757, 1125
MluCI	AATT	9 cut(s)	263, 293, 355, 445, 585, 614, 733, 840, 911
MlyI	GAGTC	3 cut(s)	66, 101, 220
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	8 cut(s)	95, 196, 430, 573, 705, 799, 997, 1026
MseI	TTAA	6 cut(s)	320, 492, 636, 714, 746, 930
MspA1I	CMGCKG	1 cut(s)	1131
MspR9I	CCNGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
MwoI	GCNNNNNNNGC	4 cut(s)	47, 111, 777, 983
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	277, 439
NlaIII	CATG	3 cut(s)	121, 173, 224
NmuCI	GTSAC	1 cut(s)	761
NsbI	TGCGCA	1 cut(s)	49
NspI	RCATGY	1 cut(s)	121
PasI	CCCWGGG	1 cut(s)	347
PciSI	GCTCTTC	2 cut(s)	31, 1130
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	116, 247, 770, 1102, 1105, 1133
PleI	GAGTC	3 cut(s)	66, 100, 219
PpsI	GAGTC	3 cut(s)	66, 100, 219
PshBI	ATTAAT	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	1125
Psp6I	CCWGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	1105
PvuII	CAGCTG	1 cut(s)	1131
SacI	GAGCTC	1 cut(s)	1125
SapI	GCTCTTC	2 cut(s)	31, 1130
SaqAI	TTAA	6 cut(s)	320, 492, 636, 714, 746, 930
SatI	GCNGC	6 cut(s)	115, 246, 769, 1101, 1104, 1132
Sau3AI	GATC	2 cut(s)	277, 439
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	3 cut(s)	66, 101, 220
ScrFI	CCNGG	7 cut(s)	108, 348, 387, 532, 777, 923, 1097
SduI	GDGCHC	3 cut(s)	178, 757, 1125
SfaNI	GCATC	3 cut(s)	59, 565, 862
SfcI	CTRYAG	2 cut(s)	1083, 1101
SfiI	GGCCNNNNNGGCC	1 cut(s)	111
Sse9I	AATT	9 cut(s)	263, 293, 355, 445, 585, 614, 733, 840, 911
SsiI	CCGC	2 cut(s)	115, 1047
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	4 cut(s)	99, 305, 434, 792
SstI	GAGCTC	1 cut(s)	1125
StyD4I	CCNGG	7 cut(s)	106, 346, 385, 530, 775, 921, 1095
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	4 cut(s)	90, 233, 287, 704
TasI	AATT	9 cut(s)	263, 293, 355, 445, 585, 614, 733, 840, 911
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	6 cut(s)	320, 492, 636, 714, 746, 930
Tru9I	TTAA	6 cut(s)	320, 492, 636, 714, 746, 930
TscAI	CASTG	3 cut(s)	27, 90, 193
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	5 cut(s)	245, 768, 1100, 1103, 1131
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	2 cut(s)	17, 368
TspGWI	ACGGA	2 cut(s)	168, 651
TspRI	CASTG	3 cut(s)	27, 90, 193
VspI	ATTAAT	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	6 cut(s)	263, 293, 355, 445, 733, 911
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	4 cut(s)	99, 305, 434, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.