Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013280

Physical Location & Seq

Genomic Coordinates Reverse (-)

20980369 .. 20984115

Gene Structure 3747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACGATAATGATCAAGTTTCTCCTGTTAGCTCTGCTCGTGATCTCTCCGATTTGCGCCGAGAAGGACCTGATGAAAGAGGAATGCCATAATGCACAAGTTCCGACCATTTGCATGCAATGTCTTGAATCCGACCCAACCTCCGTTCATGCAGACCGTGTTGGCATCGCCGAGATCATCATACACTGTCTCGACTCTCGTCTCGATATCATCACCAAGCAAAAGGGTGAGCTGCAGATTGGTGAAGTAGTTGAGAAGAAAACGAGAAAGAGAAAATCGAAAAGTGACAACAAGATCAGAAAGAAACCCTCCGTAGAGACTCCAACAGAAGCGAAAGCTTTAAAAGTTGTAGATAATCTTCTAGCTGAATTAAACCAAACAACTGATGATGCTGAGAAAGAAGGGATCATAGATGTTGTTAATGCTACTTCTGAAGCTATTGAAAACGAAACTGAAGTCGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAGGAGCAAAGAAAGTCAAGATTCAAGAAGATGGAATCTCTGTCATCGATTACAATGAAAAGTGAGGATGTTAACCATGATCAGTTACCTTCTAAGCAATCTGGGCTTGAAACGGTTCGTGATGTTGAGAACGCGAGTAGCAGCAAAAAGGCCATTGTCGATGTAACTTCATCTGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

232

Amino Acids

25.86

Weight (kDa)

5.61

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750
prunus_persica	Prupe.4G137400_v2.0.a1
rosa_laevigata	RLG00000032889 RLG00000032898
rosa_multiflora	Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001
rosa_rugosa	Rorug05G0090000.1 Rorug05G0090200
rosa_samantha	Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	650
AclWI	GGATC	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	453, 474
AgsI	TTSAA	4 cut(s)	128, 443, 541, 626
AluBI	AGCT	5 cut(s)	32, 232, 338, 365, 437
AluI	AGCT	5 cut(s)	32, 232, 338, 365, 437
Alw26I	GTCTC	3 cut(s)	194, 206, 311
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	232, 657
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	205, 239, 254, 491
AvaII	GGWCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	219, 669
BccI	CCATC	2 cut(s)	470, 541
BclI	TGATCA	2 cut(s)	12, 595
BcoDI	GTCTC	3 cut(s)	194, 206, 311
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	233, 658
BlsI	GCNGC	2 cut(s)	234, 659
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmsI	GCATC	2 cut(s)	174, 379
BoxI	GACNNNNGTC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse3DI	GCAATG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	563
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	384, 489, 681
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	219, 669
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	668
BshVI	ATCGAT	1 cut(s)	563
BsmAI	GTCTC	3 cut(s)	194, 206, 311
BsmBI	CGTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	668
Bsp143I	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	385, 490, 682
BspDI	ATCGAT	1 cut(s)	563
BspFNI	CGCG	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	125
BssMI	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	158, 188, 631
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	393, 498, 609, 690
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	7 cut(s)	15, 45, 177, 297, 408, 463, 598
BstMAI	GTCTC	3 cut(s)	194, 206, 311
BstMBI	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	219, 669
Bsu15I	ATCGAT	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	668
BsuTUI	ATCGAT	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	563
CviAII	CATG	3 cut(s)	115, 149, 593
CviJI	RGCY	9 cut(s)	32, 232, 338, 365, 437, 491, 505, 622, 668
CviKI_1	RGCY	9 cut(s)	32, 232, 338, 365, 437, 491, 505, 622, 668
DdeI	CTNAG	4 cut(s)	393, 498, 609, 690
DpnI	GATC	7 cut(s)	14, 44, 176, 296, 407, 462, 597
DpnII	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
DraI	TTTAAA	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	453, 474
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	118, 152, 596
FaiI	YATR	7 cut(s)	90, 116, 150, 182, 410, 594, 697
FatI	CATG	3 cut(s)	114, 148, 592
FbaI	TGATCA	2 cut(s)	12, 595
Fnu4HI	GCNGC	2 cut(s)	233, 658
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	233, 658
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	233, 658
HaeIII	GGCC	1 cut(s)	668
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	118, 152, 596
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	5 cut(s)	128, 194, 319, 537, 551
HpaI	GTTAAC	1 cut(s)	589
HphI	GGTGA	4 cut(s)	205, 239, 254, 491
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	7 cut(s)	51, 105, 133, 299, 433, 499, 691
Hpy188III	TCNNGA	7 cut(s)	40, 125, 191, 203, 534, 541, 635
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	3 cut(s)	58, 395, 615
HpyCH4III	ACNGT	3 cut(s)	158, 188, 631
HpyCH4V	TGCA	5 cut(s)	95, 114, 118, 152, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	4 cut(s)	393, 498, 609, 690
Hsp92II	CATG	3 cut(s)	118, 152, 596
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	12, 595
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	3 cut(s)	38, 83, 603
Lsp1109I	GCAGC	2 cut(s)	219, 669
LweI	GCATC	2 cut(s)	174, 379
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	284, 600, 679
MalI	GATC	7 cut(s)	14, 44, 176, 296, 407, 462, 597
MboI	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
MboII	GAAGA	3 cut(s)	268, 350, 556
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	188, 313
MmeI	TCCRAC	3 cut(s)	128, 156, 347
MnlI	CCTC	7 cut(s)	73, 151, 319, 478, 481, 574, 685
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	341, 371, 420, 588
MslI	CAYNNNNRTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	89
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	619
NdeII	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
NlaIII	CATG	3 cut(s)	118, 152, 596
NmeAIII	GCCGAG	2 cut(s)	85, 196
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	128, 537, 551
PkrI	GCNGC	2 cut(s)	234, 659
PleI	GAGTC	2 cut(s)	188, 313
PpsI	GAGTC	2 cut(s)	188, 313
PpuMI	RGGWCCY	1 cut(s)	67
PshAI	GACNNNNGTC	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	341, 371, 420, 588
SatI	GCNGC	2 cut(s)	233, 658
Sau3AI	GATC	7 cut(s)	12, 42, 174, 294, 405, 460, 595
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	188, 313
SetI	ASST	8 cut(s)	34, 72, 143, 234, 340, 367, 439, 607
SfaNI	GCATC	2 cut(s)	174, 379
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	1 cut(s)	368
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	158, 188, 631
TaqI	TCGA	6 cut(s)	192, 204, 278, 459, 563, 675
TasI	AATT	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	128, 537, 551
Tru1I	TTAA	4 cut(s)	341, 371, 420, 588
Tru9I	TTAA	4 cut(s)	341, 371, 420, 588
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	232, 657
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	89, 137, 587, 675
TspGWI	ACGGA	2 cut(s)	133, 301
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.