Rh3CG298000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013280
Physical Location & Seq
Reverse (-)
30619902 .. 30620846
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG298000.1

Sequence Viewer

Length: 372 bp
ATGACGTCGATCCGCGTCAGAGCTTTCTCCAATGACCAGTCGAAAGAGGTCGTCAAGCTTCTGGAGAAGCAGTCGACGTGCACCGCCGATGAGCTCCACCATCAACCTCGTCCCAAATCCAATCGATTCTGGAGCTTCAAGGTCCGGCCATTTGCACCTGCAATTTCACAGTTCCGGCCGGCCGATCAGACAGCAAATAGTGCGCCGGTGCCTCCGTCCCTTGTCCTTCAGATCCGGTGCCCAGAGCAATTTCTGGGTGCCAGAAGCATTTTTTTTTTTTTGTACACTGTGAACCCCGAGAATGAGGAAGGAATGAGGAAGGAATTGCAATGTAACTGTGGGGTTTGTTTGATGGTCTACTGGGGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

123

Amino Acids

14.12

Weight (kDa)

8.95

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 3 cut(s) 208, 237, 257
AccI GTMKAC 2 cut(s) 74, 357
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 13, 84
AclWI GGATC 2 cut(s) 4, 226
AcoI YGGCCR 3 cut(s) 146, 176, 180
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 284
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 78
AluBI AGCT 4 cut(s) 23, 58, 94, 135
AluI AGCT 4 cut(s) 23, 58, 94, 135
Alw21I GWGCWC 2 cut(s) 83, 96
Alw44I GTGCAC 1 cut(s) 79
AlwI GGATC 2 cut(s) 4, 226
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 3 cut(s) 146, 176, 180
ApaLI GTGCAC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 2 cut(s) 83, 242
BanI GGYRCC 3 cut(s) 208, 237, 257
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 83, 96
BccI CCATC 2 cut(s) 108, 346
BfuAI ACCTGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 210, 239, 259
BmrI ACTGGG 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 370
BpmI CTGGAG 2 cut(s) 83, 151
Bsa29I ATCGAT 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 2 cut(s) 178, 205
Bse1I ACTGG 2 cut(s) 37, 365
Bse3DI GCAATG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 124
BseMI GCAATG 1 cut(s) 335
BseNI ACTGG 2 cut(s) 37, 365
BseSI GKGCMC 2 cut(s) 83, 242
BseX3I CGGCCG 2 cut(s) 176, 180
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 2 cut(s) 179, 183
BshFI GGCC 3 cut(s) 148, 178, 182
BshNI GGYRCC 3 cut(s) 208, 237, 257
BshVI ATCGAT 1 cut(s) 124
BsiEI CGRYCG 2 cut(s) 179, 183
BsiHKAI GWGCWC 2 cut(s) 83, 96
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 5 cut(s) 145, 175, 179, 206, 235
BslFI GGGAC 2 cut(s) 96, 202
BsmFI GGGAC 2 cut(s) 96, 202
BsnI GGCC 3 cut(s) 148, 178, 182
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 83, 96, 242
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 3 cut(s) 9, 184, 231
BspACI CCGC 2 cut(s) 13, 84
BspANI GGCC 3 cut(s) 148, 178, 182
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 210, 239, 259
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 4, 226
BspT107I GGYRCC 3 cut(s) 208, 237, 257
BsrDI GCAATG 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 178, 205
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 37, 365
BssAI RCCGGY 2 cut(s) 178, 205
BssMI GATC 3 cut(s) 9, 184, 231
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 171, 289, 338
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 180
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 12, 187, 234
BstMBI GATC 3 cut(s) 9, 184, 231
BstMCI CGRYCG 2 cut(s) 179, 183
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSLI GKGCMC 2 cut(s) 83, 242
BstUI CGCG 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BstZI CGGCCG 2 cut(s) 176, 180
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 3 cut(s) 148, 178, 182
BsuTUI ATCGAT 1 cut(s) 124
BtrI CACGTC 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 2 cut(s) 178, 205
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 283
CviJI RGCY 7 cut(s) 23, 58, 94, 135, 148, 178, 182
CviKI_1 RGCY 7 cut(s) 23, 58, 94, 135, 148, 178, 182
CviQI GTAC 1 cut(s) 283
DpnI GATC 3 cut(s) 11, 186, 233
DpnII GATC 3 cut(s) 9, 184, 231
EaeI YGGCCR 3 cut(s) 146, 176, 180
EagI CGGCCG 2 cut(s) 176, 180
Ecl136II GAGCTC 1 cut(s) 94
EclXI CGGCCG 2 cut(s) 176, 180
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 2 cut(s) 176, 180
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 96
FaqI GGGAC 2 cut(s) 96, 202
FblI GTMKAC 2 cut(s) 74, 357
FriOI GRGCYC 1 cut(s) 96
FseI GGCCGGCC 1 cut(s) 182
GlaI GCGC 1 cut(s) 204
GsuI CTGGAG 2 cut(s) 83, 151
HaeIII GGCC 3 cut(s) 148, 178, 182
HapII CCGG 5 cut(s) 145, 175, 179, 206, 235
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 126
HpaII CCGG 5 cut(s) 145, 175, 179, 206, 235
Hpy166II GTNNAC 5 cut(s) 75, 81, 285, 292, 358
Hpy188I TCNGA 3 cut(s) 20, 189, 231
Hpy188III TCNNGA 2 cut(s) 62, 130
Hpy8I GTNNAC 5 cut(s) 75, 81, 285, 292, 358
Hpy99I CGWCG 2 cut(s) 10, 79
HpyAV CCTTC 3 cut(s) 236, 302, 313
HpyCH4III ACNGT 3 cut(s) 171, 289, 338
HpyCH4IV ACGT 2 cut(s) 5, 77
HpyCH4V TGCA 4 cut(s) 81, 155, 161, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 5, 77
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 3 cut(s) 9, 184, 231
LmnI GCTCC 2 cut(s) 99, 132
MaeII ACGT 2 cut(s) 5, 77
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 11, 186, 233
MboI GATC 3 cut(s) 9, 184, 231
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 83, 96, 242
MluCI AATT 3 cut(s) 162, 248, 323
MnlI CCTC 5 cut(s) 40, 117, 222, 298, 309
MroNI GCCGGC 1 cut(s) 178
MspI CCGG 5 cut(s) 145, 175, 179, 206, 235
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 200
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 3 cut(s) 9, 184, 231
NgoMIV GCCGGC 1 cut(s) 178
NlaIV GGNNCC 3 cut(s) 210, 239, 259
PaqCI CACCTGC 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 210, 239, 259
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 231
RigI GGCCGGCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 73
Sau3AI GATC 3 cut(s) 9, 184, 231
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 3 cut(s) 83, 96, 242
SgrAI CRCCGGYG 1 cut(s) 205
SinI GGWCC 1 cut(s) 142
Sse9I AATT 3 cut(s) 162, 248, 323
SsiI CCGC 2 cut(s) 13, 84
SstI GAGCTC 1 cut(s) 96
TaaI ACNGT 3 cut(s) 171, 289, 338
TaiI ACGT 2 cut(s) 8, 80
TaqI TCGA 4 cut(s) 8, 41, 74, 124
TasI AATT 3 cut(s) 162, 248, 323
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 1 cut(s) 292
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 142
XmiI GTMKAC 2 cut(s) 74, 357
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.