Rh5BG180000
ERF Family

Plant invertase pectin methylesterase inhibitor superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
19653417 .. 19653710
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG180000.1

Sequence Viewer

Length: 294 bp
ATGTCAGAAATAGCTTCTGGAATCAAAGATAAAAATGTCCCGAAAGCTTTGAAAACATGTAGCAAAGGGTTTTACTCATCCACACAGGACTTGGCTTCGGCAACCCTCAAGTTGAAGAGTGTCAAGTATGGTGGTGCTGAACATTCTGTGAGTCGAGCTGTCGTGTATGTGGCTTATTGTCGTCATGAGATTGAGGTTTACAATGGGAAAGTAGTTCCTAGAGACATGATTTATGAAATGTTGATATATGTAGAGCTATCCGAGGCTGCTAATAGAATAATTGAAGGACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.73

Weight (kDa)

8.53

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 3 cut(s) 52, 115, 284
AluBI AGCT 4 cut(s) 14, 47, 158, 256
AluI AGCT 4 cut(s) 14, 47, 158, 256
Alw26I GTCTC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 2 cut(s) 219, 292
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 23
BspHI TCATGA 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 77
CciI TCATGA 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 3 cut(s) 57, 185, 226
CviJI RGCY 7 cut(s) 14, 47, 95, 158, 173, 256, 266
CviKI_1 RGCY 7 cut(s) 14, 47, 95, 158, 173, 256, 266
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
FaeI CATG 3 cut(s) 60, 188, 229
FaiI YATR 8 cut(s) 58, 129, 168, 186, 227, 234, 247, 249
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 56, 184, 225
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 219, 292
GluI GCNGC 1 cut(s) 267
Hin1II CATG 3 cut(s) 60, 188, 229
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 3 cut(s) 21, 151, 288
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 7, 262
Hpy188III TCNNGA 3 cut(s) 18, 40, 185
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 278
Hsp92II CATG 3 cut(s) 60, 188, 229
LpnPI CCDG 2 cut(s) 3, 71
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 2 cut(s) 219, 292
MboII GAAGA 1 cut(s) 127
MluCI AATT 1 cut(s) 279
MlyI GAGTC 2 cut(s) 160, 282
MnlI CCTC 3 cut(s) 116, 187, 256
NlaIII CATG 3 cut(s) 60, 188, 229
NspI RCATGY 1 cut(s) 60
PagI TCATGA 1 cut(s) 184
PciI ACATGT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 2 cut(s) 159, 282
PpsI GAGTC 2 cut(s) 159, 282
PscI ACATGT 1 cut(s) 56
SatI GCNGC 1 cut(s) 267
SchI GAGTC 2 cut(s) 160, 282
SetI ASST 5 cut(s) 16, 49, 160, 198, 258
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 219, 292
TaqI TCGA 1 cut(s) 154
TasI AATT 1 cut(s) 279
TfiI GAWTC 1 cut(s) 21
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 249
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 2 cut(s) 219, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.