Rorug05G0090200
ERF Family

Plant invertase pectin methylesterase inhibitor superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013280
Physical Location & Seq
Forward (+)
7919025 .. 7920420
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0090200.1

Sequence Viewer

Length: 819 bp
ATGGGGGTGTGGTACACGTCGTGTGGAGAGTTTTGGGGGAGAGAATGGAACTTACAAGATGTAGCCACAACTAGTGGGCTTGTGCTCGTGCATTGCCTTTGTCTATTGGCACCCTTTCATTTCACCTGGGGTGCATTCTGTGTATTCCACATTCTGGTTTATGTGACGGGTTTAGGGATCACGCTGTCGTACCATAGAAATCTTGCCCACAAGAGTTTCAAGCTTCCAAAATGGCTCGAGTACTTGTTTGCCTATTTTGGAGTTCTCTCACTTCAGGGTAGTCCAATTGCATGGGTGAGCACACATAGGTATCACCACCAATTTACAAAGACACCCACAGCCCCCTTCAGGTATGGAGGACTAAAGAACGTTGGAGATCTGAAGAGGCAACCATTCTATGTGTTTCTTCATTGTACTTACCCTCTACATTCACTTCTTCTTGGAGCTTTGCTATATCTCCTGGGTGGACTCCCCTTCTTCATTTGGGGAATGGGAGTGAGAGTGGTATATGTTCTCCATGCAACTTTGTTGGTTAATTCGGTTGGCCACATGTGGGGAAAGCAAGTATGGAAGACCGGTGATTTGTCTCGGAACAATTGGCTCTTGGGATTCCTGGTGCTAGGAGAAGGCTGGCACAATAACCACCATGCCTTTGAATTCTCAGCTCGTCAGGGTCTGGAATGGTGGCAGATCGACTTTACTTGGTATGTGATAAGATTGCTTCAGGCTATTGGACTGGCAAGAGATGTGAAGTCCCCAACTGAGACTCAAAAGCAACGAAAAGCTTTGGTTACTAGAACCATGGCTAGTCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

272

Amino Acids

31.35

Weight (kDa)

9.47

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 146 - 239 2.5e-08 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 154
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 4 cut(s) 257, 331, 401, 707
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 4 cut(s) 14, 191, 242, 415
AfiI CCNNNNNNNGG 3 cut(s) 154, 348, 553
AflIII ACRYGT 2 cut(s) 15, 549
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 2 cut(s) 220, 656
AhlI ACTAGT 1 cut(s) 71
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 3 cut(s) 125, 459, 612
AluBI AGCT 4 cut(s) 223, 446, 665, 785
AluI AGCT 4 cut(s) 223, 446, 665, 785
Alw21I GWGCWC 2 cut(s) 87, 302
Alw26I GTCTC 2 cut(s) 591, 758
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 676
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 544
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
AsiGI ACCGGT 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 115, 305, 307, 590
AvaI CYCGRG 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 293, 326
BalI TGGCCA 1 cut(s) 546
BanI GGYRCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 2 cut(s) 87, 302
BciT130I CCWGG 3 cut(s) 127, 461, 614
BcoDI GTCTC 2 cut(s) 591, 758
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 4 cut(s) 72, 620, 795, 807
BglII AGATCT 1 cut(s) 376
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 3 cut(s) 127, 461, 614
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 3 cut(s) 127, 461, 614
BpiI GAAGAC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 126, 460, 801
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 348, 553
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 741
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 127, 461, 614
BseDI CCNNGG 3 cut(s) 126, 460, 801
BseLI CCNNNNNNNGG 3 cut(s) 154, 348, 553
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 675, 753
BseNI ACTGG 1 cut(s) 741
BshFI GGCC 1 cut(s) 546
BshNI GGYRCC 1 cut(s) 109
BshTI ACCGGT 1 cut(s) 575
BsiHKAI GWGCWC 2 cut(s) 87, 302
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 154, 348, 553
BsmAI GTCTC 2 cut(s) 591, 758
BsmFI GGGAC 1 cut(s) 739
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 1 cut(s) 546
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 87, 302
Bsp143I GATC 3 cut(s) 177, 376, 690
Bsp19I CCATGG 1 cut(s) 801
BspANI GGCC 1 cut(s) 546
BspCNI CTCAG 2 cut(s) 674, 754
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 126, 460, 801
BssMI GATC 3 cut(s) 177, 376, 690
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 801
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 127, 461, 614
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 661, 762
BstDSI CCRYGG 1 cut(s) 801
BstKTI GATC 3 cut(s) 180, 379, 693
BstMAI GTCTC 2 cut(s) 591, 758
BstMBI GATC 3 cut(s) 177, 376, 690
BstNI CCWGG 3 cut(s) 127, 461, 614
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 3 cut(s) 125, 459, 612
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 291
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 801
BtrI CACGTC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 632
CaiI CAGNNNCTG 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 575
Csp6I GTAC 4 cut(s) 13, 190, 241, 414
CspAI ACCGGT 1 cut(s) 575
CviAII CATG 5 cut(s) 291, 518, 550, 647, 802
CviQI GTAC 4 cut(s) 13, 190, 241, 414
DdeI CTNAG 2 cut(s) 661, 762
DpnI GATC 3 cut(s) 179, 378, 692
DpnII GATC 3 cut(s) 177, 376, 690
DraIII CACNNNGTG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 801
Eco57I CTGAAG 4 cut(s) 257, 331, 401, 707
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 656
EcoRII CCWGG 3 cut(s) 125, 459, 612
EcoT14I CCWWGG 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 5 cut(s) 294, 521, 553, 650, 805
FaqI GGGAC 1 cut(s) 739
FatI CATG 5 cut(s) 290, 517, 549, 646, 801
FspBI CTAG 4 cut(s) 72, 620, 795, 807
HaeIII GGCC 1 cut(s) 546
HapII CCGG 1 cut(s) 576
Hin1II CATG 5 cut(s) 294, 521, 553, 650, 805
HindIII AAGCTT 2 cut(s) 221, 783
HinfI GANTC 3 cut(s) 468, 609, 766
HpaII CCGG 1 cut(s) 576
HphI GGTGA 4 cut(s) 115, 305, 307, 590
Hpy166II GTNNAC 2 cut(s) 15, 467
Hpy188I TCNGA 2 cut(s) 381, 591
Hpy188III TCNNGA 2 cut(s) 677, 812
Hpy8I GTNNAC 2 cut(s) 15, 467
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 355, 484, 620
HpyCH4IV ACGT 2 cut(s) 17, 369
HpyCH4V TGCA 4 cut(s) 91, 134, 290, 521
HpyF3I CTNAG 2 cut(s) 661, 762
HpySE526I ACGT 2 cut(s) 17, 369
Hsp92II CATG 5 cut(s) 294, 521, 553, 650, 805
Kzo9I GATC 3 cut(s) 177, 376, 690
LmnI GCTCC 1 cut(s) 443
MaeI CTAG 4 cut(s) 72, 620, 795, 807
MaeII ACGT 2 cut(s) 17, 369
MaeIII GTNAC 2 cut(s) 163, 790
MalI GATC 3 cut(s) 179, 378, 692
MboI GATC 3 cut(s) 177, 376, 690
MboII GAAGA 5 cut(s) 394, 398, 428, 469, 583
MfeI CAATTG 2 cut(s) 285, 595
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 87, 302
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 5 cut(s) 285, 320, 535, 595, 656
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 2 cut(s) 462, 760
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 3 cut(s) 350, 378, 432
Mox20I TGGCCA 1 cut(s) 546
MscI TGGCCA 1 cut(s) 546
MseI TTAA 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 546
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 127, 461, 614
MunI CAATTG 2 cut(s) 285, 595
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 3 cut(s) 127, 461, 614
NcoI CCATGG 1 cut(s) 801
NdeII GATC 3 cut(s) 177, 376, 690
NlaIII CATG 5 cut(s) 294, 521, 553, 650, 805
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 549
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 609
PflMI CCANNNNNTGG 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 575
PleI GAGTC 2 cut(s) 462, 760
PpsI GAGTC 2 cut(s) 462, 760
PscI ACATGT 1 cut(s) 549
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 3 cut(s) 125, 459, 612
PspGI CCWGG 3 cut(s) 125, 459, 612
PspN4I GGNNCC 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 4 cut(s) 14, 191, 242, 415
RsaNI GTAC 4 cut(s) 13, 190, 241, 414
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 3 cut(s) 177, 376, 690
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 2 cut(s) 462, 760
ScrFI CCNGG 3 cut(s) 127, 461, 614
SduI GDGCHC 2 cut(s) 87, 302
SetI ASST 9 cut(s) 20, 128, 225, 311, 353, 372, 448, 667, 787
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 5 cut(s) 285, 320, 535, 595, 656
SspMI CTAG 4 cut(s) 72, 620, 795, 807
StyD4I CCNGG 3 cut(s) 125, 459, 612
StyI CCWWGG 1 cut(s) 801
TaiI ACGT 2 cut(s) 20, 372
TaqI TCGA 2 cut(s) 237, 693
TasI AATT 5 cut(s) 285, 320, 535, 595, 656
TatI WGTACW 2 cut(s) 240, 413
TfiI GAWTC 1 cut(s) 609
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 107, 398, 469
Van91I CCANNNNNTGG 1 cut(s) 154
XapI RAATTY 1 cut(s) 656
XceI RCATGY 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 4 cut(s) 72, 620, 795, 807
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.