Plant invertase pectin methylesterase inhibitor superfamily protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750 |
| prunus_persica | Prupe.4G137400_v2.0.a1 |
| rosa_laevigata | RLG00000032889 RLG00000032898 |
| rosa_multiflora | Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001 |
| rosa_rugosa | Rorug05G0090000.1 Rorug05G0090200 |
| rosa_samantha | Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 646 |
| AatII | GACGTC | 1 cut(s) | 488 |
| Acc36I | ACCTGC | 2 cut(s) | 646, 1113 |
| Acc65I | GGTACC | 1 cut(s) | 46 |
| AccB1I | GGYRCC | 3 cut(s) | 46, 688, 737 |
| AccI | GTMKAC | 1 cut(s) | 554 |
| AccII | CGCG | 3 cut(s) | 92, 495, 995 |
| AciI | CCGC | 4 cut(s) | 304, 493, 564, 1136 |
| AclWI | GGATC | 2 cut(s) | 484, 706 |
| AcoI | YGGCCR | 8 cut(s) | 168, 270, 626, 656, 660, 971, 1071, 1088 |
| AcuI | CTGAAG | 1 cut(s) | 692 |
| AcyI | GRCGYC | 1 cut(s) | 485 |
| AfaI | GTAC | 3 cut(s) | 48, 376, 764 |
| AflIII | ACRYGT | 3 cut(s) | 177, 233, 377 |
| AgeI | ACCGGT | 7 cut(s) | 831, 838, 859, 866, 887, 894, 936 |
| AgsI | TTSAA | 4 cut(s) | 296, 619, 1114, 1274 |
| AhlI | ACTAGT | 1 cut(s) | 976 |
| AjiI | CACGTC | 2 cut(s) | 446, 558 |
| AjnI | CCWGG | 2 cut(s) | 382, 699 |
| AluBI | AGCT | 9 cut(s) | 107, 191, 503, 538, 574, 615, 1010, 1157, 1246 |
| AluI | AGCT | 9 cut(s) | 107, 191, 503, 538, 574, 615, 1010, 1157, 1246 |
| Alw21I | GWGCWC | 2 cut(s) | 563, 576 |
| Alw26I | GTCTC | 3 cut(s) | 397, 955, 1206 |
| Alw44I | GTGCAC | 1 cut(s) | 559 |
| AlwI | GGATC | 2 cut(s) | 484, 706 |
| AoxI | GGCC | 8 cut(s) | 168, 270, 626, 656, 660, 971, 1071, 1088 |
| ApaLI | GTGCAC | 1 cut(s) | 559 |
| ApeKI | GCWGC | 2 cut(s) | 87, 1256 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 16, 48 |
| AsiGI | ACCGGT | 7 cut(s) | 831, 838, 859, 866, 887, 894, 936 |
| Asp718I | GGTACC | 1 cut(s) | 46 |
| AspLEI | GCGC | 3 cut(s) | 92, 685, 969 |
| AspS9I | GGNCC | 4 cut(s) | 386, 622, 703, 822 |
| AsuHPI | GGTGA | 9 cut(s) | 821, 828, 849, 856, 877, 884, 905, 926, 973 |
| AvaII | GGWCC | 4 cut(s) | 386, 622, 703, 822 |
| BaeGI | GKGCMC | 3 cut(s) | 445, 563, 722 |
| BalI | TGGCCA | 2 cut(s) | 170, 1073 |
| BanI | GGYRCC | 3 cut(s) | 46, 688, 737 |
| BanII | GRGCYC | 1 cut(s) | 576 |
| Bbv12I | GWGCWC | 2 cut(s) | 563, 576 |
| BbvI | GCAGC | 2 cut(s) | 99, 1243 |
| BccI | CCATC | 4 cut(s) | 179, 397, 588, 1082 |
| BceAI | ACGGC | 3 cut(s) | 101, 460, 1004 |
| BciT130I | CCWGG | 2 cut(s) | 384, 701 |
| BcoDI | GTCTC | 3 cut(s) | 397, 955, 1206 |
| BcuI | ACTAGT | 1 cut(s) | 976 |
| BfaI | CTAG | 3 cut(s) | 977, 1209, 1282 |
| BfuAI | ACCTGC | 2 cut(s) | 646, 1113 |
| BisI | GCNGC | 2 cut(s) | 88, 1257 |
| BlsI | GCNGC | 2 cut(s) | 89, 1258 |
| Bme1390I | CCNGG | 2 cut(s) | 384, 701 |
| Bme18I | GGWCC | 4 cut(s) | 386, 622, 703, 822 |
| BmgBI | CACGTC | 2 cut(s) | 446, 558 |
| BmgT120I | GGNCC | 4 cut(s) | 386, 622, 703, 822 |
| BmiI | GGNNCC | 4 cut(s) | 48, 690, 739, 823 |
| BmrFI | CCNGG | 2 cut(s) | 384, 701 |
| BmsI | GCATC | 3 cut(s) | 69, 369, 1183 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 236, 268 |
| BpmI | CTGGAG | 3 cut(s) | 376, 563, 631 |
| BpuEI | CTTGAG | 2 cut(s) | 273, 1091 |
| Bsa29I | ATCGAT | 1 cut(s) | 604 |
| BsaHI | GRCGYC | 1 cut(s) | 485 |
| BsaI | GGTCTC | 1 cut(s) | 397 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 476, 699, 1251 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 415, 445, 536, 566 |
| Bse1I | ACTGG | 6 cut(s) | 346, 359, 373, 517, 715, 1058 |
| Bse3DI | GCAATG | 1 cut(s) | 815 |
| BseBI | CCWGG | 2 cut(s) | 384, 701 |
| BseCI | ATCGAT | 1 cut(s) | 604 |
| BseDI | CCNNGG | 4 cut(s) | 42, 476, 699, 1251 |
| BseGI | GGATG | 3 cut(s) | 10, 53, 254 |
| BseMI | GCAATG | 1 cut(s) | 815 |
| BseMII | CTCAG | 3 cut(s) | 119, 768, 1022 |
| BseNI | ACTGG | 6 cut(s) | 346, 359, 373, 517, 715, 1058 |
| BseRI | GAGGAG | 4 cut(s) | 420, 423, 457, 460 |
| BseSI | GKGCMC | 3 cut(s) | 445, 563, 722 |
| BseX3I | CGGCCG | 2 cut(s) | 656, 660 |
| BseXI | GCAGC | 2 cut(s) | 99, 1243 |
| BseYI | CCCAGC | 2 cut(s) | 107, 1010 |
| Bsh1236I | CGCG | 3 cut(s) | 92, 495, 995 |
| Bsh1285I | CGRYCG | 5 cut(s) | 659, 663, 843, 871, 899 |
| BshFI | GGCC | 8 cut(s) | 170, 272, 628, 658, 662, 973, 1073, 1090 |
| BshNI | GGYRCC | 3 cut(s) | 46, 688, 737 |
| BshTI | ACCGGT | 7 cut(s) | 831, 838, 859, 866, 887, 894, 936 |
| BshVI | ATCGAT | 1 cut(s) | 604 |
| BsiEI | CGRYCG | 5 cut(s) | 659, 663, 843, 871, 899 |
| BsiHKAI | GWGCWC | 2 cut(s) | 563, 576 |
| BslFI | GGGAC | 3 cut(s) | 432, 576, 682 |
| BsmAI | GTCTC | 3 cut(s) | 397, 955, 1206 |
| BsmFI | GGGAC | 3 cut(s) | 432, 576, 682 |
| BsnI | GGCC | 8 cut(s) | 170, 272, 628, 658, 662, 973, 1073, 1090 |
| Bso31I | GGTCTC | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 4 cut(s) | 445, 563, 576, 722 |
| Bsp1407I | TGTACA | 2 cut(s) | 374, 762 |
| Bsp143I | GATC | 3 cut(s) | 489, 664, 711 |
| BspACI | CCGC | 4 cut(s) | 304, 493, 564, 1136 |
| BspANI | GGCC | 8 cut(s) | 170, 272, 628, 658, 662, 973, 1073, 1090 |
| BspCNI | CTCAG | 3 cut(s) | 120, 769, 1023 |
| BspDI | ATCGAT | 1 cut(s) | 604 |
| BspFNI | CGCG | 3 cut(s) | 92, 495, 995 |
| BspLI | GGNNCC | 4 cut(s) | 48, 690, 739, 823 |
| BspMI | ACCTGC | 2 cut(s) | 646, 1113 |
| BspPI | GGATC | 2 cut(s) | 484, 706 |
| BspQI | GCTCTTC | 1 cut(s) | 1236 |
| BspT107I | GGYRCC | 3 cut(s) | 46, 688, 737 |
| BspTNI | GGTCTC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 815 |
| BsrGI | TGTACA | 2 cut(s) | 374, 762 |
| BsrI | ACTGG | 6 cut(s) | 346, 359, 373, 517, 715, 1058 |
| BssECI | CCNNGG | 4 cut(s) | 42, 476, 699, 1251 |
| BssMI | GATC | 3 cut(s) | 489, 664, 711 |
| BssNI | GRCGYC | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 2 cut(s) | 384, 701 |
| Bst4CI | ACNGT | 6 cut(s) | 157, 414, 651, 769, 818, 985 |
| Bst6I | CTCTTC | 1 cut(s) | 1236 |
| BstACI | GRCGYC | 1 cut(s) | 485 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 66, 680 |
| BstAUI | TGTACA | 2 cut(s) | 374, 762 |
| BstC8I | GCNNGC | 4 cut(s) | 274, 660, 971, 1092 |
| BstDEI | CTNAG | 5 cut(s) | 128, 137, 777, 1031, 1040 |
| BstDSI | CCRYGG | 1 cut(s) | 476 |
| BstEII | GGTNACC | 8 cut(s) | 827, 834, 855, 862, 883, 890, 911, 932 |
| BstF5I | GGATG | 3 cut(s) | 10, 53, 254 |
| BstFNI | CGCG | 3 cut(s) | 92, 495, 995 |
| BstHHI | GCGC | 3 cut(s) | 92, 685, 969 |
| BstKTI | GATC | 3 cut(s) | 492, 667, 714 |
| BstMAI | GTCTC | 3 cut(s) | 397, 955, 1206 |
| BstMBI | GATC | 3 cut(s) | 489, 664, 711 |
| BstMCI | CGRYCG | 5 cut(s) | 659, 663, 843, 871, 899 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 66, 104, 113, 357, 680, 1007, 1016 |
| BstNI | CCWGG | 2 cut(s) | 384, 701 |
| BstNSI | RCATGY | 3 cut(s) | 181, 237, 381 |
| BstPI | GGTNACC | 8 cut(s) | 827, 834, 855, 862, 883, 890, 911, 932 |
| BstSCI | CCNGG | 2 cut(s) | 382, 699 |
| BstSLI | GKGCMC | 3 cut(s) | 445, 563, 722 |
| BstUI | CGCG | 3 cut(s) | 92, 495, 995 |
| BstV1I | GCAGC | 2 cut(s) | 99, 1243 |
| BstX2I | RGATCY | 1 cut(s) | 711 |
| BstYI | RGATCY | 1 cut(s) | 711 |
| BstZI | CGGCCG | 2 cut(s) | 656, 660 |
| Bsu15I | ATCGAT | 1 cut(s) | 604 |
| BsuRI | GGCC | 8 cut(s) | 170, 272, 628, 658, 662, 973, 1073, 1090 |
| BsuTUI | ATCGAT | 1 cut(s) | 604 |
| BtgI | CCRYGG | 1 cut(s) | 476 |
| BtrI | CACGTC | 2 cut(s) | 446, 558 |
| BtsCI | GGATG | 3 cut(s) | 10, 53, 254 |
| BtsIMutI | CAGTG | 5 cut(s) | 352, 353, 366, 722, 765 |
| BveI | ACCTGC | 2 cut(s) | 646, 1113 |
| Cac8I | GCNNGC | 4 cut(s) | 274, 660, 971, 1092 |
| CfoI | GCGC | 3 cut(s) | 92, 685, 969 |
| Cfr13I | GGNCC | 4 cut(s) | 386, 622, 703, 822 |
| ClaI | ATCGAT | 1 cut(s) | 604 |
| CseI | GACGC | 1 cut(s) | 484 |
| Csp6I | GTAC | 3 cut(s) | 47, 375, 763 |
| CspAI | ACCGGT | 7 cut(s) | 831, 838, 859, 866, 887, 894, 936 |
| CviAII | CATG | 6 cut(s) | 178, 234, 378, 1081, 1184, 1216 |
| CviQI | GTAC | 3 cut(s) | 47, 375, 763 |
| DdeI | CTNAG | 5 cut(s) | 128, 137, 777, 1031, 1040 |
| DpnI | GATC | 3 cut(s) | 491, 666, 713 |
| DpnII | GATC | 3 cut(s) | 489, 664, 711 |
| DraI | TTTAAA | 1 cut(s) | 229 |
| EaeI | YGGCCR | 8 cut(s) | 168, 270, 626, 656, 660, 971, 1071, 1088 |
| EagI | CGGCCG | 2 cut(s) | 656, 660 |
| Eam1104I | CTCTTC | 1 cut(s) | 1236 |
| EarI | CTCTTC | 1 cut(s) | 1236 |
| Ecl136II | GAGCTC | 1 cut(s) | 574 |
| EclXI | CGGCCG | 2 cut(s) | 656, 660 |
| Eco24I | GRGCYC | 1 cut(s) | 576 |
| Eco31I | GGTCTC | 1 cut(s) | 397 |
| Eco47I | GGWCC | 4 cut(s) | 386, 622, 703, 822 |
| Eco52I | CGGCCG | 2 cut(s) | 656, 660 |
| Eco53kI | GAGCTC | 1 cut(s) | 574 |
| Eco57I | CTGAAG | 1 cut(s) | 692 |
| Eco91I | GGTNACC | 8 cut(s) | 827, 834, 855, 862, 883, 890, 911, 932 |
| EcoICRI | GAGCTC | 1 cut(s) | 574 |
| EcoO65I | GGTNACC | 8 cut(s) | 827, 834, 855, 862, 883, 890, 911, 932 |
| EcoRII | CCWGG | 2 cut(s) | 382, 699 |
| EcoT38I | GRGCYC | 1 cut(s) | 576 |
| FaeI | CATG | 6 cut(s) | 181, 237, 381, 1084, 1187, 1219 |
| FaqI | GGGAC | 3 cut(s) | 432, 576, 682 |
| FatI | CATG | 6 cut(s) | 177, 233, 377, 1080, 1183, 1215 |
| FauI | CCCGC | 1 cut(s) | 297 |
| FblI | GTMKAC | 1 cut(s) | 554 |
| Fnu4HI | GCNGC | 2 cut(s) | 88, 1257 |
| FokI | GGATG | 3 cut(s) | 17, 40, 241 |
| FriOI | GRGCYC | 1 cut(s) | 576 |
| FseI | GGCCGGCC | 1 cut(s) | 662 |
| Fsp4HI | GCNGC | 2 cut(s) | 88, 1257 |
| FspBI | CTAG | 3 cut(s) | 977, 1209, 1282 |
| GlaI | GCGC | 3 cut(s) | 91, 684, 968 |
| GluI | GCNGC | 2 cut(s) | 88, 1257 |
| GsaI | CCCAGC | 2 cut(s) | 111, 1014 |
| GsuI | CTGGAG | 3 cut(s) | 376, 563, 631 |
| HaeIII | GGCC | 8 cut(s) | 170, 272, 628, 658, 662, 973, 1073, 1090 |
| HgaI | GACGC | 1 cut(s) | 484 |
| HhaI | GCGC | 3 cut(s) | 92, 685, 969 |
| Hin1I | GRCGYC | 1 cut(s) | 485 |
| Hin1II | CATG | 6 cut(s) | 181, 237, 381, 1084, 1187, 1219 |
| Hin6I | GCGC | 3 cut(s) | 90, 683, 967 |
| HinP1I | GCGC | 3 cut(s) | 90, 683, 967 |
| HincII | GTYRAC | 1 cut(s) | 555 |
| HindII | GTYRAC | 1 cut(s) | 555 |
| HindIII | AAGCTT | 1 cut(s) | 536 |
| HinfI | GANTC | 9 cut(s) | 198, 606, 849, 877, 905, 926, 947, 1150, 1278 |
| HphI | GGTGA | 9 cut(s) | 821, 828, 849, 856, 877, 884, 905, 926, 973 |
| Hpy166II | GTNNAC | 5 cut(s) | 480, 555, 561, 765, 772 |
| Hpy188I | TCNGA | 7 cut(s) | 79, 184, 402, 500, 669, 711, 1252 |
| Hpy188III | TCNNGA | 8 cut(s) | 127, 160, 195, 417, 542, 610, 1030, 1063 |
| Hpy8I | GTNNAC | 5 cut(s) | 480, 555, 561, 765, 772 |
| Hpy99I | CGWCG | 6 cut(s) | 340, 450, 463, 487, 490, 559 |
| HpyAV | CCTTC | 6 cut(s) | 88, 716, 782, 793, 991, 1268 |
| HpyCH4III | ACNGT | 6 cut(s) | 157, 414, 651, 769, 818, 985 |
| HpyCH4IV | ACGT | 3 cut(s) | 445, 485, 557 |
| HpyCH4V | TGCA | 5 cut(s) | 60, 561, 635, 641, 808 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 66, 104, 113, 357, 680, 1007, 1016 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 137, 777, 1031, 1040 |
| HpySE526I | ACGT | 3 cut(s) | 445, 485, 557 |
| Hsp92I | GRCGYC | 1 cut(s) | 485 |
| Hsp92II | CATG | 6 cut(s) | 181, 237, 381, 1084, 1187, 1219 |
| HspAI | GCGC | 3 cut(s) | 90, 683, 967 |
| KpnI | GGTACC | 1 cut(s) | 50 |
| KroI | GCCGGC | 4 cut(s) | 272, 658, 969, 1090 |
| KroNI | GCCGGC | 4 cut(s) | 274, 660, 971, 1092 |
| Kzo9I | GATC | 3 cut(s) | 489, 664, 711 |
| LguI | GCTCTTC | 1 cut(s) | 1236 |
| LmnI | GCTCC | 4 cut(s) | 357, 433, 579, 612 |
| Lsp1109I | GCAGC | 2 cut(s) | 99, 1243 |
| LweI | GCATC | 3 cut(s) | 69, 369, 1183 |
| MaeI | CTAG | 3 cut(s) | 977, 1209, 1282 |
| MaeII | ACGT | 3 cut(s) | 445, 485, 557 |
| MalI | GATC | 3 cut(s) | 491, 666, 713 |
| MboI | GATC | 3 cut(s) | 489, 664, 711 |
| MboII | GAAGA | 1 cut(s) | 1253 |
| MflI | RGATCY | 1 cut(s) | 711 |
| MhlI | GDGCHC | 4 cut(s) | 445, 563, 576, 722 |
| MlsI | TGGCCA | 2 cut(s) | 170, 1073 |
| MluCI | AATT | 4 cut(s) | 642, 728, 803, 1269 |
| MluNI | TGGCCA | 2 cut(s) | 170, 1073 |
| MlyI | GAGTC | 4 cut(s) | 935, 956, 1159, 1272 |
| Mox20I | TGGCCA | 2 cut(s) | 170, 1073 |
| MroNI | GCCGGC | 4 cut(s) | 272, 658, 969, 1090 |
| MscI | TGGCCA | 2 cut(s) | 170, 1073 |
| MseI | TTAA | 1 cut(s) | 228 |
| MslI | CAYNNNNRTG | 2 cut(s) | 176, 1079 |
| Msp20I | TGGCCA | 2 cut(s) | 170, 1073 |
| MspR9I | CCNGG | 2 cut(s) | 384, 701 |
| MvaI | CCWGG | 2 cut(s) | 384, 701 |
| MvnI | CGCG | 3 cut(s) | 92, 495, 995 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 66, 104, 113, 357, 680, 1007, 1016 |
| NaeI | GCCGGC | 4 cut(s) | 274, 660, 971, 1092 |
| NdeII | GATC | 3 cut(s) | 489, 664, 711 |
| NgoMIV | GCCGGC | 4 cut(s) | 272, 658, 969, 1090 |
| NlaIII | CATG | 6 cut(s) | 181, 237, 381, 1084, 1187, 1219 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 690, 739, 823 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NspI | RCATGY | 3 cut(s) | 181, 237, 381 |
| PaqCI | CACCTGC | 1 cut(s) | 646 |
| PciI | ACATGT | 3 cut(s) | 177, 233, 377 |
| PciSI | GCTCTTC | 1 cut(s) | 1236 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 442, 479 |
| PdiI | GCCGGC | 4 cut(s) | 274, 660, 971, 1092 |
| PfeI | GAWTC | 5 cut(s) | 198, 606, 849, 877, 905 |
| PflFI | GACNNNGTC | 1 cut(s) | 484 |
| PinAI | ACCGGT | 7 cut(s) | 831, 838, 859, 866, 887, 894, 936 |
| PkrI | GCNGC | 2 cut(s) | 89, 1258 |
| PleI | GAGTC | 4 cut(s) | 934, 955, 1158, 1272 |
| PpsI | GAGTC | 4 cut(s) | 934, 955, 1158, 1272 |
| PscI | ACATGT | 3 cut(s) | 177, 233, 377 |
| Psp124BI | GAGCTC | 1 cut(s) | 576 |
| Psp6I | CCWGG | 2 cut(s) | 382, 699 |
| PspEI | GGTNACC | 8 cut(s) | 827, 834, 855, 862, 883, 890, 911, 932 |
| PspFI | CCCAGC | 2 cut(s) | 107, 1010 |
| PspGI | CCWGG | 2 cut(s) | 382, 699 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 690, 739, 823 |
| PspPI | GGNCC | 4 cut(s) | 386, 622, 703, 822 |
| PsuI | RGATCY | 1 cut(s) | 711 |
| PsyI | GACNNNGTC | 1 cut(s) | 484 |
| RigI | GGCCGGCC | 1 cut(s) | 662 |
| RsaI | GTAC | 3 cut(s) | 48, 376, 764 |
| RsaNI | GTAC | 3 cut(s) | 47, 375, 763 |
| RseI | CAYNNNNRTG | 2 cut(s) | 176, 1079 |
| SacI | GAGCTC | 1 cut(s) | 576 |
| SalI | GTCGAC | 1 cut(s) | 553 |
| SapI | GCTCTTC | 1 cut(s) | 1236 |
| SaqAI | TTAA | 1 cut(s) | 228 |
| SatI | GCNGC | 2 cut(s) | 88, 1257 |
| Sau3AI | GATC | 3 cut(s) | 489, 664, 711 |
| Sau96I | GGNCC | 4 cut(s) | 386, 622, 703, 822 |
| SchI | GAGTC | 4 cut(s) | 935, 956, 1159, 1272 |
| ScrFI | CCNGG | 2 cut(s) | 384, 701 |
| SduI | GDGCHC | 4 cut(s) | 445, 563, 576, 722 |
| SfaNI | GCATC | 3 cut(s) | 69, 369, 1183 |
| SgrAI | CRCCGGYG | 1 cut(s) | 685 |
| SinI | GGWCC | 4 cut(s) | 386, 622, 703, 822 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 176, 1079 |
| SmlI | CTYRAG | 2 cut(s) | 288, 1106 |
| SmoI | CTYRAG | 2 cut(s) | 288, 1106 |
| SpeI | ACTAGT | 1 cut(s) | 976 |
| Sse9I | AATT | 4 cut(s) | 642, 728, 803, 1269 |
| SsiI | CCGC | 4 cut(s) | 304, 493, 564, 1136 |
| SspMI | CTAG | 3 cut(s) | 977, 1209, 1282 |
| SstI | GAGCTC | 1 cut(s) | 576 |
| StyD4I | CCNGG | 2 cut(s) | 382, 699 |
| TaaI | ACNGT | 6 cut(s) | 157, 414, 651, 769, 818, 985 |
| TaiI | ACGT | 3 cut(s) | 448, 488, 560 |
| TaqI | TCGA | 8 cut(s) | 27, 63, 338, 488, 521, 554, 604, 1153 |
| TasI | AATT | 4 cut(s) | 642, 728, 803, 1269 |
| TatI | WGTACW | 2 cut(s) | 374, 762 |
| TfiI | GAWTC | 5 cut(s) | 198, 606, 849, 877, 905 |
| Tru1I | TTAA | 1 cut(s) | 228 |
| Tru9I | TTAA | 1 cut(s) | 228 |
| TscAI | CASTG | 5 cut(s) | 353, 359, 373, 722, 772 |
| TseI | GCWGC | 2 cut(s) | 87, 1256 |
| TspDTI | ATGAA | 2 cut(s) | 1239, 1254 |
| TspGWI | ACGGA | 1 cut(s) | 684 |
| TspRI | CASTG | 5 cut(s) | 353, 359, 373, 722, 772 |
| Tth111I | GACNNNGTC | 1 cut(s) | 484 |
| VneI | GTGCAC | 1 cut(s) | 559 |
| VpaK11BI | GGWCC | 4 cut(s) | 386, 622, 703, 822 |
| XceI | RCATGY | 3 cut(s) | 181, 237, 381 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |
| XmiI | GTMKAC | 1 cut(s) | 554 |
| XspI | CTAG | 3 cut(s) | 977, 1209, 1282 |
| ZraI | GACGTC | 1 cut(s) | 486 |