Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013280

Physical Location & Seq

Genomic Coordinates Forward (+)

7639550 .. 7641630

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G137400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACCTCTTTCTTATATGACAAACTAATCCCAGCAGAATGTCACAGTGCTGAGGTACCAACATCCTGCATCAAGTGCCTTAAATCCAATCGGCGCGCTGACAAGGCTGACAAAGTCGGAACTGCAACTATTCTCATAAGTTGTCTAAGCAACCATGCCAACGCTTTGGCAACCAACATGTCAGGCACCGCGTCTGGCACCAAAGATCAAGTTGTGACGGGTGTTTTTCAAAGGAAGAATGGGAAGTATGATGATGCTGAAAAGTCTCTCACACTAGCCCTCAACTATAACACGCGTTGTCTTTCGAAGATTGACATTTACAAAAGTCGAATTCCAAGCAGCATGTCGTTTGAAATGAATGAAGAACTAACCGAGGCTGCAAGGATCGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

132

Amino Acids

14.37

Weight (kDa)

7.6

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750
prunus_persica	Prupe.4G137400_v2.0.a1
rosa_laevigata	RLG00000032889 RLG00000032898
rosa_multiflora	Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001
rosa_rugosa	Rorug05G0090000.1 Rorug05G0090200
rosa_samantha	Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	3 cut(s)	55, 185, 197
AccII	CGCG	3 cut(s)	96, 191, 295
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	57
AflIII	ACRYGT	2 cut(s)	177, 293
AgsI	TTSAA	2 cut(s)	230, 353
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	339, 377
ApoI	RAATTY	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	96, 98
AsuII	TTCGAA	1 cut(s)	305
BanI	GGYRCC	3 cut(s)	55, 185, 197
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	351, 364
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	340, 378
BlsI	GCNGC	2 cut(s)	341, 379
BmiI	GGNNCC	3 cut(s)	57, 187, 199
BmsI	GCATC	2 cut(s)	78, 244
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	42
BsePI	GCGCGC	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	351, 364
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	3 cut(s)	96, 191, 295
BshNI	GGYRCC	3 cut(s)	55, 185, 197
BsmAI	GTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	205, 384
BspACI	CCGC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	3 cut(s)	96, 191, 295
BspLI	GGNNCC	3 cut(s)	57, 187, 199
BspPI	GGATC	1 cut(s)	392
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	3 cut(s)	55, 185, 197
BssECI	CCNNGG	1 cut(s)	372
BssHII	GCGCGC	1 cut(s)	94
BssMI	GATC	2 cut(s)	205, 384
Bst4CI	ACNGT	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	51, 146
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	3 cut(s)	96, 191, 295
BstHHI	GCGC	2 cut(s)	96, 98
BstKTI	GATC	2 cut(s)	208, 387
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	205, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 104
BstNSI	RCATGY	2 cut(s)	181, 346
BstUI	CGCG	3 cut(s)	96, 191, 295
BstV1I	GCAGC	2 cut(s)	351, 364
BstXI	CCANNNNNNTGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	2 cut(s)	96, 98
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	3 cut(s)	155, 178, 343
CviJI	RGCY	3 cut(s)	107, 278, 377
CviKI_1	RGCY	3 cut(s)	107, 278, 377
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	51, 146
DpnI	GATC	2 cut(s)	207, 386
DpnII	GATC	2 cut(s)	205, 384
EcoRI	GAATTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	158, 181, 346
FaiI	YATR	8 cut(s)	16, 18, 137, 156, 179, 249, 288, 344
FatI	CATG	3 cut(s)	154, 177, 342
Fnu4HI	GCNGC	2 cut(s)	340, 378
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	340, 378
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	2 cut(s)	95, 97
GluI	GCNGC	2 cut(s)	340, 378
GsaI	CCCAGC	1 cut(s)	35
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	2 cut(s)	96, 98
Hin1II	CATG	3 cut(s)	158, 181, 346
Hin6I	GCGC	2 cut(s)	94, 96
HinP1I	GCGC	2 cut(s)	94, 96
Hpy188I	TCNGA	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	69, 125, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 104
HpyF3I	CTNAG	2 cut(s)	51, 146
Hsp92II	CATG	3 cut(s)	158, 181, 346
HspAI	GCGC	2 cut(s)	94, 96
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	205, 384
LpnPI	CCDG	4 cut(s)	45, 79, 168, 180
Lsp1109I	GCAGC	2 cut(s)	351, 364
LweI	GCATC	2 cut(s)	78, 244
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	41, 214
MalI	GATC	2 cut(s)	207, 386
MboI	GATC	2 cut(s)	205, 384
MboII	GAAGA	3 cut(s)	247, 319, 374
MluCI	AATT	1 cut(s)	330
MluI	ACGCGT	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	16, 46, 290, 367
MseI	TTAA	1 cut(s)	81
MvnI	CGCG	3 cut(s)	96, 191, 295
MwoI	GCNNNNNNNGC	2 cut(s)	75, 104
NdeII	GATC	2 cut(s)	205, 384
NlaIII	CATG	3 cut(s)	158, 181, 346
NlaIV	GGNNCC	3 cut(s)	57, 187, 199
NmuCI	GTSAC	2 cut(s)	41, 214
NspI	RCATGY	2 cut(s)	181, 346
NspV	TTCGAA	1 cut(s)	305
PauI	GCGCGC	1 cut(s)	94
PciI	ACATGT	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	341, 379
PscI	ACATGT	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	57, 187, 199
PsyI	GACNNNGTC	1 cut(s)	113
PteI	GCGCGC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	340, 378
Sau3AI	GATC	2 cut(s)	205, 384
SetI	ASST	2 cut(s)	8, 57
SfaNI	GCATC	2 cut(s)	78, 244
SfuI	TTCGAA	1 cut(s)	305
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	3 cut(s)	305, 328, 387
TasI	AATT	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	41, 214
TseI	GCWGC	2 cut(s)	339, 377
Tsp45I	GTSAC	2 cut(s)	41, 214
TspDTI	ATGAA	2 cut(s)	371, 375
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	2 cut(s)	181, 346
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.