Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003020.1

Orthogroup ID

OG0013280

Physical Location & Seq

Genomic Coordinates Forward (+)

67404 .. 69359

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003020.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ctgctccagcgcaccacaccaggctccggtctctctctatctctctatctctctgctctggcgccccacctcaggctccgggccaccacctccatccagtccccactgccatcagaaacgatcgtcaaccgtcataggtccctcaagccagcccccagatcgaagctcaacccccaagcgccgccgtcaccgaaccaaactctctctctctctctcttactgccatggctgttccggcaccccactttcagcttcaggccaacctcgatcgatccacctccggcgtcaccaacaaccaaaccacagatccacagatccacagatccaaagcccacagccacaactcagcccccaactccgatccgactccgaacccaggccgaatcgactccgctccaacgtgaaacacgctccgacgactcctcacagtccgggggcaataaattcagaagtcggaatcccgttaacagtccggtggctggattcctgattccggtcaccggtcgccggatcccagggccagccactggtcaccggagcacagcaagaatcacagagatcgacactggcttcttcattcactattgttcttcttgttctgctgtattccccttttttgatgtcattgaagatgagcaactaatccaaatagagtgtcacaaggccgaagtaccaataacctgcatcgggtgcctcatatcgaatccacgcagcgagaaggctgacaaagttgggattgccatcatcatcctaagttgtgtaagcaataatgccaagactttgaccactaacatgacagaaattgctctcgacgccaaagataataatgtgacagcaattttgaaaaaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

284

Amino Acids

30.98

Weight (kDa)

9.83

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750
prunus_persica	Prupe.4G137400_v2.0.a1
rosa_laevigata	RLG00000032889 RLG00000032898
rosa_multiflora	Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001
rosa_rugosa	Rorug05G0090000.1 Rorug05G0090200
rosa_samantha	Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	3 cut(s)	61, 237, 690
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	394
AciI	CCGC	2 cut(s)	182, 392
AclWI	GGATC	7 cut(s)	266, 301, 309, 317, 355, 505, 518
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	238
AcyI	GRCGYC	3 cut(s)	62, 284, 813
AfaI	GTAC	1 cut(s)	672
AfiI	CCNNNNNNNGG	9 cut(s)	26, 72, 376, 479, 493, 500, 507, 527, 687
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	629, 844
AjnI	CCWGG	3 cut(s)	19, 375, 514
AluBI	AGCT	2 cut(s)	166, 252
AluI	AGCT	2 cut(s)	166, 252
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	7 cut(s)	266, 301, 309, 317, 355, 505, 518
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	5 cut(s)	81, 257, 378, 518, 663
ApeKI	GCWGC	1 cut(s)	711
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	4 cut(s)	640, 672, 823, 855
AsiGI	ACCGGT	1 cut(s)	500
AspLEI	GCGC	3 cut(s)	12, 64, 181
AspS9I	GGNCC	3 cut(s)	81, 138, 518
AsuC2I	CCSGG	2 cut(s)	80, 433
AsuHPI	GGTGA	4 cut(s)	180, 279, 490, 524
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	510
BanI	GGYRCC	3 cut(s)	61, 237, 690
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	723
BccI	CCATC	3 cut(s)	101, 118, 749
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	3 cut(s)	21, 377, 516
BcnI	CCSGG	2 cut(s)	80, 433
BcoDI	GTCTC	1 cut(s)	35
BfoI	RGCGCY	2 cut(s)	65, 182
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	2 cut(s)	182, 712
BlsI	GCNGC	2 cut(s)	183, 713
Bme1390I	CCNGG	5 cut(s)	21, 80, 377, 433, 516
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	81, 138, 518
BmiI	GGNNCC	7 cut(s)	25, 63, 77, 140, 239, 512, 692
BmrFI	CCNGG	5 cut(s)	21, 80, 377, 433, 516
BmsI	GCATC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	80, 433
Bsa29I	ATCGAT	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	740
BsaHI	GRCGYC	3 cut(s)	62, 284, 813
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	224, 375, 432, 514, 515
BsaWI	WCCGGW	5 cut(s)	26, 472, 493, 500, 534
Bsc4I	CCNNNNNNNGG	9 cut(s)	26, 72, 376, 479, 493, 500, 507, 527, 687
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	3 cut(s)	97, 532, 571
Bse21I	CCTNAGG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	21, 377, 516
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	224, 375, 432, 514, 515
BseGI	GGATG	2 cut(s)	93, 747
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	9 cut(s)	26, 72, 376, 479, 493, 500, 507, 527, 687
BseMII	CTCAG	2 cut(s)	85, 359
BseNI	ACTGG	3 cut(s)	97, 532, 571
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	723
Bsh1285I	CGRYCG	3 cut(s)	123, 270, 505
BshFI	GGCC	5 cut(s)	83, 259, 380, 520, 665
BshNI	GGYRCC	3 cut(s)	61, 237, 690
BshTI	ACCGGT	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	270
BsiEI	CGRYCG	3 cut(s)	123, 270, 505
BsiHKAI	GWGCWC	1 cut(s)	542
BslFI	GGGAC	2 cut(s)	85, 124
BslI	CCNNNNNNNGG	9 cut(s)	26, 72, 376, 479, 493, 500, 507, 527, 687
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	85, 124
BsnI	GGCC	5 cut(s)	83, 259, 380, 520, 665
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	2 cut(s)	182, 392
BspANI	GGCC	5 cut(s)	83, 259, 380, 520, 665
BspCNI	CTCAG	2 cut(s)	84, 358
BspDI	ATCGAT	1 cut(s)	270
BspLI	GGNNCC	7 cut(s)	25, 63, 77, 140, 239, 512, 692
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	7 cut(s)	266, 301, 309, 317, 355, 505, 518
BspT107I	GGYRCC	3 cut(s)	61, 237, 690
BspTNI	GGTCTC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	97, 532, 571
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	224, 375, 432, 514, 515
BssNI	GRCGYC	3 cut(s)	62, 284, 813
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	3 cut(s)	21, 377, 516
Bst4CI	ACNGT	3 cut(s)	131, 429, 470
BstACI	GRCGYC	3 cut(s)	62, 284, 813
BstAPI	GCANNNNNTGC	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	150, 522
BstDEI	CTNAG	3 cut(s)	71, 345, 752
BstDSI	CCRYGG	1 cut(s)	224
BstEII	GGTNACC	2 cut(s)	496, 530
BstF5I	GGATG	2 cut(s)	93, 747
BstH2I	RGCGCY	2 cut(s)	65, 182
BstHHI	GCGC	3 cut(s)	12, 64, 181
BstMAI	GTCTC	1 cut(s)	35
BstMCI	CGRYCG	3 cut(s)	123, 270, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 690, 812
BstNI	CCWGG	3 cut(s)	21, 377, 516
BstPI	GGTNACC	2 cut(s)	496, 530
BstSCI	CCNGG	5 cut(s)	19, 78, 375, 431, 514
BstV1I	GCAGC	1 cut(s)	723
BstX2I	RGATCY	4 cut(s)	306, 314, 322, 510
BstYI	RGATCY	4 cut(s)	306, 314, 322, 510
Bsu15I	ATCGAT	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	5 cut(s)	83, 259, 380, 520, 665
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	93, 747
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	3 cut(s)	104, 525, 564
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	150, 522
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	3 cut(s)	12, 64, 181
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	81, 138, 518
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	2 cut(s)	273, 821
Csp6I	GTAC	1 cut(s)	671
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	2 cut(s)	225, 793
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	3 cut(s)	71, 345, 752
DinI	GGCGCC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	71
Eco91I	GGTNACC	2 cut(s)	496, 530
EcoO109I	RGGNCCY	1 cut(s)	138
EcoO65I	GGTNACC	2 cut(s)	496, 530
EcoRII	CCWGG	3 cut(s)	19, 375, 514
EcoT14I	CCWWGG	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	228, 796
FaiI	YATR	4 cut(s)	135, 226, 698, 794
FaqI	GGGAC	2 cut(s)	85, 124
FatI	CATG	2 cut(s)	224, 792
Fnu4HI	GCNGC	2 cut(s)	182, 712
FokI	GGATG	2 cut(s)	80, 734
Fsp4HI	GCNGC	2 cut(s)	182, 712
GlaI	GCGC	3 cut(s)	11, 63, 180
GluI	GCNGC	2 cut(s)	182, 712
HaeII	RGCGCY	2 cut(s)	65, 182
HaeIII	GGCC	5 cut(s)	83, 259, 380, 520, 665
HgaI	GACGC	2 cut(s)	273, 821
HhaI	GCGC	3 cut(s)	12, 64, 181
Hin1I	GRCGYC	3 cut(s)	62, 284, 813
Hin1II	CATG	2 cut(s)	228, 796
Hin6I	GCGC	3 cut(s)	10, 62, 179
HinP1I	GCGC	3 cut(s)	10, 62, 179
HincII	GTYRAC	2 cut(s)	127, 466
HindII	GTYRAC	2 cut(s)	127, 466
HinfI	GANTC	9 cut(s)	366, 383, 388, 419, 457, 483, 490, 549, 703
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	4 cut(s)	180, 279, 490, 524
Hpy166II	GTNNAC	2 cut(s)	127, 466
Hpy188I	TCNGA	7 cut(s)	115, 360, 365, 371, 415, 449, 456
Hpy188III	TCNNGA	2 cut(s)	487, 809
Hpy8I	GTNNAC	2 cut(s)	127, 466
Hpy99I	CGWCG	2 cut(s)	419, 815
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	3 cut(s)	131, 429, 470
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 690, 812
HpyF3I	CTNAG	3 cut(s)	71, 345, 752
HpySE526I	ACGT	1 cut(s)	400
Hsp92I	GRCGYC	3 cut(s)	62, 284, 813
Hsp92II	CATG	2 cut(s)	228, 796
HspAI	GCGC	3 cut(s)	10, 62, 179
KasI	GGCGCC	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	466
LmnI	GCTCC	6 cut(s)	9, 29, 81, 399, 416, 537
Lsp1109I	GCAGC	1 cut(s)	723
LweI	GCATC	1 cut(s)	693
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	6 cut(s)	186, 285, 496, 530, 656, 829
MbiI	CCGCTC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	565, 582, 641
MflI	RGATCY	4 cut(s)	306, 314, 322, 510
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	3 cut(s)	443, 801, 837
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	3 cut(s)	360, 382, 413
MmeI	TCCRAC	4 cut(s)	388, 421, 434, 438
MnlI	CCTC	7 cut(s)	80, 100, 152, 274, 288, 433, 704
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	791
MspR9I	CCNGG	5 cut(s)	21, 80, 377, 433, 516
MvaI	CCWGG	3 cut(s)	21, 377, 516
MwoI	GCNNNNNNNGC	3 cut(s)	235, 690, 812
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	80, 433
NcoI	CCATGG	1 cut(s)	224
NlaIII	CATG	2 cut(s)	228, 796
NlaIV	GGNNCC	7 cut(s)	25, 63, 77, 140, 239, 512, 692
NmuCI	GTSAC	6 cut(s)	186, 285, 496, 530, 656, 829
PasI	CCCWGGG	1 cut(s)	515
PfeI	GAWTC	6 cut(s)	383, 457, 483, 490, 549, 703
PflMI	CCANNNNNTGG	1 cut(s)	527
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	183, 713
Ple19I	CGATCG	2 cut(s)	123, 270
PleI	GAGTC	3 cut(s)	360, 382, 413
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	3 cut(s)	360, 382, 413
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	19, 375, 514
PspEI	GGTNACC	2 cut(s)	496, 530
PspGI	CCWGG	3 cut(s)	19, 375, 514
PspN4I	GGNNCC	7 cut(s)	25, 63, 77, 140, 239, 512, 692
PspPI	GGNCC	3 cut(s)	81, 138, 518
PspPPI	RGGWCCY	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	4 cut(s)	306, 314, 322, 510
PvuI	CGATCG	2 cut(s)	123, 270
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	182, 712
Sau96I	GGNCC	3 cut(s)	81, 138, 518
SchI	GAGTC	3 cut(s)	360, 382, 413
ScrFI	CCNGG	5 cut(s)	21, 80, 377, 433, 516
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	9 cut(s)	72, 92, 140, 168, 254, 266, 280, 403, 683
SfaNI	GCATC	1 cut(s)	693
SfoI	GGCGCC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	443, 801, 837
SsiI	CCGC	2 cut(s)	182, 392
SspDI	GGCGCC	1 cut(s)	61
StyD4I	CCNGG	5 cut(s)	19, 78, 375, 431, 514
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	131, 429, 470
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	7 cut(s)	161, 266, 270, 386, 561, 701, 810
TasI	AATT	3 cut(s)	443, 801, 837
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	6 cut(s)	383, 457, 483, 490, 549, 703
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	111, 532, 571
TseFI	GTSAC	6 cut(s)	186, 285, 496, 530, 656, 829
TseI	GCWGC	1 cut(s)	711
Tsp45I	GTSAC	6 cut(s)	186, 285, 496, 530, 656, 829
TspDTI	ATGAA	1 cut(s)	565
TspRI	CASTG	3 cut(s)	111, 532, 571
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.