Rh5AG182000
ERF Family

Plant invertase pectin methylesterase inhibitor superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013280
Physical Location & Seq
Forward (+)
20612712 .. 20613938
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG182000.1

Sequence Viewer

Length: 315 bp
ATGGCAACTGACCAACTAATCCAAATCGAGTGTCACAACGCCAAGGTACCAACATCCTGCATCGAGTGCCTGAAATCTGACCCACGCAGCGCGAAGGCTACCAAAGCTGGGATTGCTGTCATTATCCTGAGTTCTCTCAGCAACAATGCCAAGACAGTCAAGACTTTGGCCATCAACATGTCAAAAATAGCTTCTGGAATCAAAGATAAAAATGTCACAAAAGTTTTGAAAACATGTAGCAAAGAGTTTTACTCATCCACACAGGACTTGGCCGGCTTCGGCAACCCTCAAGTTGAAAAGTGGCAGAGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

104

Amino Acids

11.27

Weight (kDa)

9.3

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 6 - 91 1.2e-07 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccII CGCG 1 cut(s) 92
AcoI YGGCCR 2 cut(s) 168, 270
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 2 cut(s) 177, 233
AgsI TTSAA 2 cut(s) 229, 296
AluBI AGCT 2 cut(s) 107, 191
AluI AGCT 2 cut(s) 107, 191
AoxI GGCC 2 cut(s) 168, 270
ApeKI GCWGC 1 cut(s) 87
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp718I GGTACC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 179
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpuEI CTTGAG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 53, 254
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 119, 151
BseXI GCAGC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 170, 272
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 108
BsnI GGCC 2 cut(s) 170, 272
BspANI GGCC 2 cut(s) 170, 272
BspCNI CTCAG 2 cut(s) 120, 150
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 128, 137
BstF5I GGATG 2 cut(s) 53, 254
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 66, 104, 113
BstNSI RCATGY 2 cut(s) 181, 237
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 170, 272
BtsCI GGATG 2 cut(s) 53, 254
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 272
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 178, 234
CviJI RGCY 6 cut(s) 98, 107, 170, 191, 272, 276
CviKI_1 RGCY 6 cut(s) 98, 107, 170, 191, 272, 276
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 2 cut(s) 128, 137
EaeI YGGCCR 2 cut(s) 168, 270
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 181, 237
FaiI YATR 2 cut(s) 179, 235
FatI CATG 2 cut(s) 177, 233
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 2 cut(s) 40, 241
Fsp4HI GCNGC 1 cut(s) 88
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 88
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 170, 272
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 181, 237
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 127, 160, 195
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 104, 113
HpyF3I CTNAG 2 cut(s) 128, 137
Hsp92II CATG 2 cut(s) 181, 237
HspAI GCGC 1 cut(s) 90
KpnI GGTACC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 70, 83, 93, 140, 180, 248, 286
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 32, 214
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MnlI CCTC 1 cut(s) 297
Mox20I TGGCCA 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 66, 104, 113
NaeI GCCGGC 1 cut(s) 274
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 181, 237
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 32, 214
NspI RCATGY 2 cut(s) 181, 237
PciI ACATGT 2 cut(s) 177, 233
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 89
PscI ACATGT 2 cut(s) 177, 233
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 1 cut(s) 88
SetI ASST 3 cut(s) 48, 109, 193
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 27, 63
TfiI GAWTC 1 cut(s) 198
TseFI GTSAC 2 cut(s) 32, 214
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 2 cut(s) 32, 214
XceI RCATGY 2 cut(s) 181, 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.