Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013280

Physical Location & Seq

Genomic Coordinates Forward (+)

20488107 .. 20489405

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGGGGTCGCAGGACGAAGCCTTTAGGAGGGGCCGAAGACGGCGTCGTATTCGGGATCATCAGTGGAGAAGAAGGTGGTTTCGATGGGGGTGGTTTGGCATTGGGGATGGGGGATGGGAGTGGTGGGTCGTGGAGAGGAGAGGAAGAGACAGATGGGTGTTGGGGGTTTGGGAAAGGAAGTGCTGACCAACTAATCCAAATCGAGTGTCACAACGCCAAGGTACCAACAACCTGCATCGAGTGCCTGAAATCCGACCCACGTAGCGCGAAGGCTAACAAAGCTGGGATTGCCGTCATTATCCTAAGTTCTCTAAGCAACAATGCCAAGACTTTGGCCACCAACATGTCAGAAATAGCTTCTGGAATCAAAGATAAAAATGTTGCAAAGGGTTTTACTCGTCCACACAGGACTTGGCTTCGGCAACCCTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

146

Amino Acids

15.11

Weight (kDa)

8.4

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750
prunus_persica	Prupe.4G137400_v2.0.a1
rosa_laevigata	RLG00000032889 RLG00000032898
rosa_multiflora	Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001
rosa_rugosa	Rorug05G0090000.1 Rorug05G0090200
rosa_samantha	Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	269
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	345
AluBI	AGCT	2 cut(s)	284, 359
AluI	AGCT	2 cut(s)	284, 359
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	33, 336
ArsI	GACNNNNNNTTYG	4 cut(s)	30, 62, 193, 225
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	4 cut(s)	80, 103, 110, 149
BceAI	ACGGC	2 cut(s)	58, 278
BcoDI	GTCTC	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	34, 225
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	114, 121
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	35, 338
BshNI	GGYRCC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	35, 338
Bsp143I	GATC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	35, 338
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	34, 225
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	305, 314
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	114, 121
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 281, 290
BstNSI	RCATGY	1 cut(s)	349
BstUI	CGCG	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	35, 338
BtsCI	GGATG	2 cut(s)	114, 121
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	22, 35, 275, 284, 338, 359, 418
CviKI_1	RGCY	7 cut(s)	22, 35, 275, 284, 338, 359, 418
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	305, 314
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	349
FaiI	YATR	1 cut(s)	347
FatI	CATG	1 cut(s)	345
FokI	GGATG	2 cut(s)	121, 128
GlaI	GCGC	1 cut(s)	268
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	35, 338
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	256, 352
Hpy188III	TCNNGA	2 cut(s)	55, 363
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	68, 265
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	237, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 281, 290
HpyF3I	CTNAG	2 cut(s)	305, 314
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	247, 260, 270, 348, 394
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	50, 83, 158
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	23, 131, 136
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	338
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	243, 281, 290
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	34, 225
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	349
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	34, 225
PspPI	GGNCC	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	6 cut(s)	79, 225, 236, 265, 286, 361
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	84, 204, 240
TfiI	GAWTC	1 cut(s)	366
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.