Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042341.1

Orthogroup ID

OG0013280

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1815

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042341.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

ctgaccaactaatccaaatcgagtgtcacaacgccgaggtaccaacatcctgcatcgagtgcctgaaatctgacccacgcagcgcgaaggctaacaaagctgggattgccgtcattatcctgagttctctaagcaacaatgccaagccagtcaagactttggccatcaacatgacttggccggcttcggcaaccctcaagttgaaaagtggcaggtatggtggtgcggaacattctgtgagtcgagctgtcgtgtatgtggcttattgtcgtcatgtgattgatgcgaaagcagttgctagagacatgatttatgaaatgttgatatatgaagagctatccgaggctgctaatagaataattgaaggactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

123

Amino Acids

13.39

Weight (kDa)

7.85

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56100 AT1G56100 AT1G56100 AT3G12880 AT4G00872 AT4G15750
prunus_persica	Prupe.4G137400_v2.0.a1
rosa_laevigata	RLG00000032889 RLG00000032898
rosa_multiflora	Rmu_sc0003020.1_g000011 Rmu_sc0003020.1_g000015 Rmu_sc0042341.1_g000001
rosa_rugosa	Rorug05G0090000.1 Rorug05G0090200
rosa_samantha	Rh3CG298000 Rh5AG182000 Rh5BG180000 Rh5CG198500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	226
AcoI	YGGCCR	2 cut(s)	161, 178
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	204, 364
AluBI	AGCT	3 cut(s)	100, 247, 336
AluI	AGCT	3 cut(s)	100, 247, 336
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	161, 178
ApeKI	GCWGC	2 cut(s)	80, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	92, 333
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	299, 372
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	81, 347
BlsI	GCNGC	2 cut(s)	82, 348
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	2 cut(s)	62, 273
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	35, 341
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	35, 341
BseGI	GGATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	92, 333
BseYI	CCCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	163, 180
BshNI	GGYRCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	163, 180
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	163, 180
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	35, 341
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	121, 130
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 97, 106
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	92, 333
BsuRI	GGCC	2 cut(s)	163, 180
BtsCI	GGATG	1 cut(s)	46
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	3 cut(s)	171, 274, 306
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	121, 130
EaeI	YGGCCR	2 cut(s)	161, 178
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
FaeI	CATG	3 cut(s)	174, 277, 309
FaiI	YATR	8 cut(s)	172, 218, 257, 275, 307, 314, 327, 329
FatI	CATG	3 cut(s)	170, 273, 305
Fnu4HI	GCNGC	2 cut(s)	81, 347
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	81, 347
FspBI	CTAG	2 cut(s)	299, 372
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	81, 347
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	163, 180
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	174, 277, 309
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	240, 368
HpaII	CCGG	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	72, 342
Hpy188III	TCNNGA	2 cut(s)	120, 153
HpyAV	CCTTC	2 cut(s)	81, 358
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 97, 106
HpyF3I	CTNAG	2 cut(s)	121, 130
Hsp92II	CATG	3 cut(s)	174, 277, 309
HspAI	GCGC	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	180
KroNI	GCCGGC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	326
LpnPI	CCDG	7 cut(s)	63, 76, 86, 133, 161, 194, 198
Lsp1109I	GCAGC	2 cut(s)	92, 333
LweI	GCATC	2 cut(s)	62, 273
MaeI	CTAG	2 cut(s)	299, 372
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	1 cut(s)	359
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	249, 362
MnlI	CCTC	3 cut(s)	30, 205, 336
Mox20I	TGGCCA	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	163
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	1 cut(s)	163
MspI	CCGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	59, 97, 106
NaeI	GCCGGC	1 cut(s)	182
NgoMIV	GCCGGC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	174, 277, 309
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	82, 348
PleI	GAGTC	2 cut(s)	248, 362
PpsI	GAGTC	2 cut(s)	248, 362
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	2 cut(s)	81, 347
SchI	GAGTC	2 cut(s)	249, 362
SetI	ASST	5 cut(s)	41, 102, 217, 249, 338
SfaNI	GCATC	2 cut(s)	62, 273
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	299, 372
TaqI	TCGA	3 cut(s)	20, 56, 243
TasI	AATT	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	80, 346
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	329, 344
XspI	CTAG	2 cut(s)	299, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.