Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

22266416 .. 22269258

Gene Structure 2843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATCCGACTCAAATCTCTCATTTGGCTCTCGACATCGGAGGGACTCTGATCAAGCTTGTGTATTTCTCTGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTTGTGAAAGGAAGGCTTTGTTTCGCTAAGTTTGAGACTAGAAAGATTGATGATTGTTTGGAGTTTATTCGATTCAATATCCTTCATCATTCCGGTGTACAGCAACCGAATGGCGAAGGTCATGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTAAGGAGAAACTTGGTATTCTTTTCGATAAGGAAGATGAGATGTGTTCTCTTGTTGGTGGTGTTAATTTTCTACTAAAGACTGTCCCAAGGGAAGCTTTTACCTACTTAGATGGCCAAAAGAAGTTTGTCGAGATCGACCATAATGATTTGTATCCATATCTACTAGTCAACATCGGTTCTGGCGTTAGCATGATCAAGGTCGATGGAGATGGAAAATATGAGAGGATAAGTGGAACAAGCCTTGGCGGAGGCACATTTTTAGGTCTTGGGAAGCTTTTAACAAAATGCAAGAGTTTTGATGAGCTGCTAGAGTTAAGCCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATATCTACGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCTTTGGGAAAGCGATTTCTGATGGTAAAGAACTTGAAGATTACCAGCCAGAAGATGTGGCAAGGTCCCTTCTAAGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCAGATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCATGGACACAATCTCCGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCAAAGGCAATGTTTTTACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAATGACCAGAGCCATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTCATAACTTTCGGCACATCCCAGTAACTTCAAATTTAAACGAAAGCGAGACCATAGAATGTAGCATCAATTTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

383

Amino Acids

42.42

Weight (kDa)

6.2

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	8 - 71	1e-10	Fumble
Fumble	PF03630	83 - 293	2.9e-97	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	540, 1031
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	1105
AdeI	CACNNNGTG	1 cut(s)	1045
AfaI	GTAC	2 cut(s)	213, 890
AfiI	CCNNNNNNNGG	1 cut(s)	717
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	5 cut(s)	190, 678, 749, 826, 1104
AhlI	ACTAGT	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AluBI	AGCT	7 cut(s)	58, 389, 568, 598, 701, 714, 999
AluI	AGCT	7 cut(s)	58, 389, 568, 598, 701, 714, 999
Alw26I	GTCTC	4 cut(s)	102, 143, 692, 1115
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	255, 406
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	1105
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	1 cut(s)	989
AspS9I	GGNCC	1 cut(s)	777
AsuHPI	GGTGA	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	777
BalI	TGGCCA	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	994
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	4 cut(s)	398, 491, 497, 728
BciVI	GTATCC	1 cut(s)	456
BclI	TGATCA	2 cut(s)	51, 486
BcoDI	GTCTC	4 cut(s)	102, 143, 692, 1115
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	3 cut(s)	153, 458, 602
BfoI	RGCGCY	1 cut(s)	990
BfrI	CTTAAG	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	2 cut(s)	6, 779
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	2 cut(s)	1042, 1146
BmuI	ACTGGG	1 cut(s)	1088
BplI	GAGNNNNNCTC	2 cut(s)	1044, 1076
BpuEI	CTTGAG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	2 cut(s)	692, 1115
BsaJI	CCNNGG	5 cut(s)	380, 535, 616, 877, 894
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	1094
Bse3DI	GCAATG	1 cut(s)	954
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	5 cut(s)	380, 535, 616, 877, 894
BseGI	GGATG	2 cut(s)	873, 1089
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	1 cut(s)	847
BseNI	ACTGG	1 cut(s)	1094
BseRI	GAGGAG	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	585
BshFI	GGCC	2 cut(s)	257, 408
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	3 cut(s)	58, 362, 763
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	4 cut(s)	102, 143, 692, 1115
BsmFI	GGGAC	3 cut(s)	58, 362, 763
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	2 cut(s)	257, 408
Bso31I	GGTCTC	2 cut(s)	692, 1115
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	4, 51, 286, 426, 486
Bsp19I	CCATGG	2 cut(s)	616, 894
BspACI	CCGC	2 cut(s)	540, 1031
BspANI	GGCC	2 cut(s)	257, 408
BspCNI	CTCAG	1 cut(s)	846
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	6, 779
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	692, 1115
BsrDI	GCAATG	1 cut(s)	954
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	1094
BssECI	CCNNGG	5 cut(s)	380, 535, 616, 877, 894
BssMI	GATC	5 cut(s)	4, 51, 286, 426, 486
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	4 cut(s)	380, 535, 616, 894
Bst2BI	CACGAG	1 cut(s)	994
Bst4CI	ACNGT	4 cut(s)	376, 662, 1045, 1067
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	211
BstDEI	CTNAG	4 cut(s)	141, 400, 785, 833
BstDSI	CCRYGG	3 cut(s)	616, 877, 894
BstF5I	GGATG	2 cut(s)	873, 1089
BstH2I	RGCGCY	1 cut(s)	990
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	5 cut(s)	7, 54, 289, 429, 489
BstMAI	GTCTC	4 cut(s)	102, 143, 692, 1115
BstMBI	GATC	5 cut(s)	4, 51, 286, 426, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	643
BstV1I	GCAGC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	257, 408
BtgI	CCRYGG	3 cut(s)	616, 877, 894
BtsCI	GGATG	2 cut(s)	873, 1089
BtsIMutI	CAGTG	1 cut(s)	1041
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	989
Cfr13I	GGNCC	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	212, 889
CviAII	CATG	6 cut(s)	236, 484, 617, 640, 895, 962
CviQI	GTAC	2 cut(s)	212, 889
DdeI	CTNAG	4 cut(s)	141, 400, 785, 833
DpnI	GATC	5 cut(s)	6, 53, 288, 428, 488
DpnII	GATC	5 cut(s)	4, 51, 286, 426, 486
DraI	TTTAAA	2 cut(s)	1026, 1110
DraIII	CACNNNGTG	1 cut(s)	1045
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	555
Eco130I	CCWWGG	4 cut(s)	380, 535, 616, 894
Eco31I	GGTCTC	2 cut(s)	692, 1115
Eco32I	GATATC	2 cut(s)	655, 795
Eco47I	GGWCC	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	777
EcoRV	GATATC	2 cut(s)	655, 795
EcoT14I	CCWWGG	4 cut(s)	380, 535, 616, 894
ErhI	CCWWGG	4 cut(s)	380, 535, 616, 894
FaeI	CATG	6 cut(s)	239, 487, 620, 643, 898, 965
FalI	AAGNNNNNCTT	6 cut(s)	114, 146, 373, 405, 957, 989
FaqI	GGGAC	3 cut(s)	58, 362, 763
FatI	CATG	6 cut(s)	235, 483, 616, 639, 894, 961
FbaI	TGATCA	2 cut(s)	51, 486
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	2 cut(s)	860, 1076
Fsp4HI	GCNGC	1 cut(s)	599
FspBI	CTAG	3 cut(s)	153, 458, 602
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	990
HaeIII	GGCC	2 cut(s)	257, 408
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	6 cut(s)	239, 487, 620, 643, 898, 965
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	3 cut(s)	56, 387, 566
HinfI	GANTC	5 cut(s)	10, 46, 95, 186, 837
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	947
Hpy166II	GTNNAC	4 cut(s)	212, 463, 891, 919
Hpy188I	TCNGA	6 cut(s)	9, 41, 51, 733, 813, 836
Hpy188III	TCNNGA	5 cut(s)	32, 236, 424, 930, 994
Hpy8I	GTNNAC	4 cut(s)	212, 463, 891, 919
HpyAV	CCTTC	5 cut(s)	120, 206, 224, 791, 959
HpyCH4III	ACNGT	4 cut(s)	376, 662, 1045, 1067
HpyCH4V	TGCA	3 cut(s)	74, 582, 1048
HpyF10VI	GCNNNNNNNGC	1 cut(s)	986
HpyF3I	CTNAG	4 cut(s)	141, 400, 785, 833
Hsp92II	CATG	6 cut(s)	239, 487, 620, 643, 898, 965
HspAI	GCGC	1 cut(s)	987
Ksp22I	TGATCA	2 cut(s)	51, 486
Kzo9I	GATC	5 cut(s)	4, 51, 286, 426, 486
LmnI	GCTCC	1 cut(s)	977
LpnPI	CCDG	9 cut(s)	220, 246, 459, 724, 770, 774, 1022, 1056, 1107
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	2 cut(s)	1042, 1146
MaeI	CTAG	3 cut(s)	153, 458, 602
MaeIII	GTNAC	1 cut(s)	1096
MalI	GATC	5 cut(s)	6, 53, 288, 428, 488
MboI	GATC	5 cut(s)	4, 51, 286, 426, 486
MboII	GAAGA	4 cut(s)	104, 338, 761, 776
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	5 cut(s)	358, 633, 1056, 1105, 1141
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	3 cut(s)	4, 40, 104
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	35, 510, 536, 703, 926, 931
Mox20I	TGGCCA	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	969
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	9 cut(s)	252, 276, 294, 357, 572, 608, 846, 1025, 1109
MslI	CAYNNNNRTG	2 cut(s)	207, 644
Msp20I	TGGCCA	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	832
MwoI	GCNNNNNNNGC	1 cut(s)	986
NcoI	CCATGG	2 cut(s)	616, 894
NdeII	GATC	5 cut(s)	4, 51, 286, 426, 486
NlaIII	CATG	6 cut(s)	239, 487, 620, 643, 898, 965
NlaIV	GGNNCC	2 cut(s)	6, 779
NspI	RCATGY	1 cut(s)	643
PagI	TCATGA	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	2 cut(s)	186, 837
PkrI	GCNGC	1 cut(s)	600
PleI	GAGTC	3 cut(s)	4, 40, 103
PpsI	GAGTC	3 cut(s)	4, 40, 103
PpuMI	RGGWCCY	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	6, 779
PspPI	GGNCC	1 cut(s)	777
PspPPI	RGGWCCY	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	213, 890
RsaNI	GTAC	2 cut(s)	212, 889
RseI	CAYNNNNRTG	2 cut(s)	207, 644
SaqAI	TTAA	9 cut(s)	252, 276, 294, 357, 572, 608, 846, 1025, 1109
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	5 cut(s)	4, 51, 286, 426, 486
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	3 cut(s)	4, 40, 104
SfaNI	GCATC	2 cut(s)	1042, 1146
SinI	GGWCC	1 cut(s)	777
SmiMI	CAYNNNNRTG	2 cut(s)	207, 644
SmlI	CTYRAG	2 cut(s)	845, 884
SmoI	CTYRAG	2 cut(s)	845, 884
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	5 cut(s)	358, 633, 1056, 1105, 1141
SsiI	CCGC	2 cut(s)	540, 1031
SspMI	CTAG	3 cut(s)	153, 458, 602
StyI	CCWWGG	4 cut(s)	380, 535, 616, 894
TaaI	ACNGT	4 cut(s)	376, 662, 1045, 1067
TaqI	TCGA	7 cut(s)	33, 184, 318, 423, 429, 495, 929
TaqII	GACCGA	2 cut(s)	797, 830
TasI	AATT	5 cut(s)	358, 633, 1056, 1105, 1141
TatI	WGTACW	2 cut(s)	211, 888
TfiI	GAWTC	2 cut(s)	186, 837
Tru1I	TTAA	9 cut(s)	252, 276, 294, 357, 572, 608, 846, 1025, 1109
Tru9I	TTAA	9 cut(s)	252, 276, 294, 357, 572, 608, 846, 1025, 1109
TscAI	CASTG	1 cut(s)	1048
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	3 cut(s)	188, 862, 978
TspGWI	ACGGA	2 cut(s)	866, 898
TspRI	CASTG	1 cut(s)	1048
Vha464I	CTTAAG	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	777
XapI	RAATTY	1 cut(s)	1105
XceI	RCATGY	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	3 cut(s)	153, 458, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.