Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

6556673 .. 6560183

Gene Structure 3511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1094800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAAATTGGGAACGTTGGAATTACAGAGGTTTCAAAACCCACCAATTCGGAAGCTCAAATTTCCCACCTTGCTCTCGATATTGGAGGTTCTCTGATAAAGTTGGTGTATTTCTCAACGAACAGTGACGATTCGTCTTCTTCGAATGATAGCTTAGCAGCTTCTAATGGCGATAGAGGGCGTCCTGTTCTTGAAGGGAAGCTCCATTTTGCAAAGTTTGAAACTCAGAAAATCAATGACTGTATAGACTTCATTCGATCCAAGCAACTTCGCCTTACTGGCTCTGAACAACACGGAGCTTCTGGGAGCGCGAAGTGCGTTATTAAGGCCACAGGTGGTGGGGCATTCAAGTACGCAGATCTCTTTAAAGAAAAGCTTGGGATTTCTCTTGACAAGGCAGATGAAATGGACTGTCTTGTGGCCGGAGCAAATTTTCTGCTTAAGGCAGTTCACCCTGAAGCATTCACATACATGGGTGGTCAGAAAGAATTTGTGAAGATTGACCATGATGATCTATATCCCTATCTGCTTGTCAATATTGGTTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAGTTTGAGCGAGTAAGTGGAACCAATGTTGGTGGTGGCACCTTTTGGGGTTTGGGGAAGCTTTTAACAAAGTGCAAGAATTTTGACGAGTTGCTGGAGTTAAGTCATCGGGGAAATAATAGAGTGATAGACATGCTTGTCGGGGACATCTATGGTGGAATGGACTATACAAAGATTGGTCTGGTATCAACAGCCATTGCTTCTAGCTTTGGCAAAGCAATTTCTGATAATAAGGAGCTGGAAGATTACAAACCTGAAGATATTTCTCGATCCCTCTTAAGAATGATTTCAAATAATGTTGGACAGATCTCATACTTGAATGCACTGAGATTTGGGCTCAAGCGAATATTCTTTGCTGGATTTTTCATTCGGGGCCATGCTTACACCATGGACACGATTGCTGTTGCCGTTCATTTCTGGTCTAAAGGTGAGGCAAAAGCAATGTTCTTAAAACACGAAGGATTTCTTGGAGCATTGGGTTCATTCATGAGCTATGAAAAGCATGGTTTTGAGGACTTGAAAGTCCATCAGTCGGTGCAACAATACCCAGTTGGTGCATCCCTCGGAGGTGATACGAGTCATGATCCACCAAATGAGGACTTGAACGAAAACCAAAGTATAGACTGCAGCGTCTACCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

408

Amino Acids

44.31

Weight (kDa)

5.86

Isoelectric Point (pI)

18.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	23 - 356	2.1e-137	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	716, 1100, 1208
AccB1I	GGYRCC	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	1212
AccII	CGCG	1 cut(s)	311
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	3 cut(s)	252, 843, 1157
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	4 cut(s)	60, 430, 488, 658
AcuI	CTGAAG	2 cut(s)	477, 855
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	1111
AflII	CTTAAG	2 cut(s)	440, 856
AgsI	TTSAA	8 cut(s)	36, 194, 221, 349, 870, 898, 1099, 1183
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AlwI	GGATC	3 cut(s)	252, 843, 1157
AoxI	GGCC	3 cut(s)	327, 420, 952
ApeKI	GCWGC	2 cut(s)	158, 1206
ApoI	RAATTY	4 cut(s)	60, 430, 488, 658
Asp700I	GAANNNNTTC	2 cut(s)	865, 1041
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	572, 952
AsuHPI	GGTGA	3 cut(s)	443, 1019, 1160
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	170, 1218
BccI	CCATC	2 cut(s)	563, 1113
BceAI	ACGGC	1 cut(s)	971
BciT130I	CCWGG	1 cut(s)	576
BclI	TGATCA	1 cut(s)	558
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	1204
BfrI	CTTAAG	2 cut(s)	440, 856
BglI	GCCNNNNNGGC	1 cut(s)	279
BglII	AGATCT	2 cut(s)	358, 885
BisI	GCNGC	2 cut(s)	159, 1207
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	160, 1208
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	572
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	572, 952
BmiI	GGNNCC	3 cut(s)	601, 619, 953
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	1 cut(s)	1121
BmsI	GCATC	1 cut(s)	1145
BmuI	ACTGGG	1 cut(s)	1121
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	695
Bpu1102I	GCTNAGC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	966, 1141
Bsc4I	CCNNNNNNNGG	1 cut(s)	1111
Bse1I	ACTGG	2 cut(s)	283, 1127
Bse3DI	GCAATG	2 cut(s)	774, 1026
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	966, 1141
BseGI	GGATG	1 cut(s)	1136
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	1111
BseMI	GCAATG	2 cut(s)	774, 1026
BseMII	CTCAG	2 cut(s)	239, 896
BseNI	ACTGG	2 cut(s)	283, 1127
BseXI	GCAGC	2 cut(s)	170, 1218
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	3 cut(s)	329, 422, 954
BshNI	GGYRCC	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	1 cut(s)	1111
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	3 cut(s)	344, 461, 904
BsnI	GGCC	3 cut(s)	329, 422, 954
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp143I	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
Bsp1720I	GCTNAGC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	966
BspANI	GGCC	3 cut(s)	329, 422, 954
BspCNI	CTCAG	2 cut(s)	238, 897
BspFNI	CGCG	1 cut(s)	311
BspHI	TCATGA	2 cut(s)	1065, 1159
BspLI	GGNNCC	3 cut(s)	601, 619, 953
BspMAI	CTGCAG	1 cut(s)	1208
BspPI	GGATC	3 cut(s)	252, 843, 1157
BspT104I	TTCGAA	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	617
BspTI	CTTAAG	2 cut(s)	440, 856
BsrDI	GCAATG	2 cut(s)	774, 1026
BsrI	ACTGG	2 cut(s)	283, 1127
BssECI	CCNNGG	2 cut(s)	966, 1141
BssMI	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	966
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	125, 242, 413
BstACI	GRCGYC	1 cut(s)	181
BstAFI	CTTAAG	2 cut(s)	440, 856
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	154, 225, 905
BstDSI	CCRYGG	1 cut(s)	966
BstF5I	GGATG	1 cut(s)	1136
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	7 cut(s)	260, 361, 514, 561, 851, 888, 1165
BstMBI	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 315
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	1204
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	170, 1218
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	358, 885
BstYI	RGATCY	2 cut(s)	358, 885
BsuRI	GGCC	3 cut(s)	329, 422, 954
BtgI	CCRYGG	1 cut(s)	966
BtsCI	GGATG	1 cut(s)	1136
BtsIMutI	CAGTG	2 cut(s)	130, 902
CciI	TCATGA	2 cut(s)	1065, 1159
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	572, 952
CseI	GACGC	2 cut(s)	170, 1198
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	8 cut(s)	472, 506, 712, 956, 967, 1066, 1082, 1160
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	154, 225, 905
DpnI	GATC	7 cut(s)	259, 360, 513, 560, 850, 887, 1164
DpnII	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
DraI	TTTAAA	1 cut(s)	367
DrdI	GACNNNNNNGTC	3 cut(s)	716, 1100, 1208
DriI	GACNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	3 cut(s)	716, 1100, 1208
EaeI	YGGCCR	1 cut(s)	420
Eam1105I	GACNNNNNGTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	477, 855
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	966
FaeI	CATG	8 cut(s)	475, 509, 715, 959, 970, 1069, 1085, 1163
FalI	AAGNNNNNCTT	4 cut(s)	360, 392, 1029, 1061
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	8 cut(s)	471, 505, 711, 955, 966, 1065, 1081, 1159
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	1212
Fnu4HI	GCNGC	2 cut(s)	159, 1207
FokI	GGATG	1 cut(s)	1123
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	2 cut(s)	159, 1207
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	159, 1207
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	329, 422, 954
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	2 cut(s)	170, 1198
HhaI	GCGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	8 cut(s)	475, 509, 715, 959, 970, 1069, 1085, 1163
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HindIII	AAGCTT	2 cut(s)	374, 638
HinfI	GANTC	2 cut(s)	131, 1156
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	3 cut(s)	443, 1019, 1160
Hpy166II	GTNNAC	2 cut(s)	451, 1213
Hpy188I	TCNGA	7 cut(s)	52, 96, 228, 286, 483, 805, 1145
Hpy188III	TCNNGA	6 cut(s)	77, 191, 389, 846, 1066, 1160
Hpy8I	GTNNAC	2 cut(s)	451, 1213
HpyAV	CCTTC	2 cut(s)	188, 1031
HpyCH4III	ACNGT	3 cut(s)	125, 242, 413
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	212, 654, 902, 1117, 1136, 1206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 315
HpyF3I	CTNAG	3 cut(s)	154, 225, 905
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	8 cut(s)	475, 509, 715, 959, 970, 1069, 1085, 1163
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
LmnI	GCTCC	6 cut(s)	207, 296, 306, 425, 814, 1049
Lsp1109I	GCAGC	2 cut(s)	170, 1218
LweI	GCATC	1 cut(s)	1145
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	7 cut(s)	259, 360, 513, 560, 850, 887, 1164
MboI	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
MboII	GAAGA	5 cut(s)	129, 132, 508, 833, 848
MflI	RGATCY	2 cut(s)	358, 885
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	8 cut(s)	6, 21, 46, 60, 430, 488, 658, 798
MlyI	GAGTC	1 cut(s)	1165
MmeI	TCCRAC	1 cut(s)	859
MnlI	CCTC	9 cut(s)	22, 80, 170, 863, 1003, 1084, 1139, 1151, 1168
MroXI	GAANNNNTTC	2 cut(s)	865, 1041
MseI	TTAA	7 cut(s)	324, 366, 441, 644, 680, 857, 1028
MslI	CAYNNNNRTG	1 cut(s)	470
MspCI	CTTAAG	2 cut(s)	440, 856
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	3 cut(s)	344, 461, 904
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	279, 315
NcoI	CCATGG	1 cut(s)	966
NdeII	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
NlaIII	CATG	8 cut(s)	475, 509, 715, 959, 970, 1069, 1085, 1163
NlaIV	GGNNCC	3 cut(s)	601, 619, 953
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	715
NspV	TTCGAA	1 cut(s)	143
PagI	TCATGA	2 cut(s)	1065, 1159
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	3 cut(s)	344, 461, 904
PdmI	GAANNNNTTC	2 cut(s)	865, 1041
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	160, 1208
PleI	GAGTC	1 cut(s)	1164
PpsI	GAGTC	1 cut(s)	1164
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	601, 619, 953
PspPI	GGNCC	2 cut(s)	572, 952
PstI	CTGCAG	1 cut(s)	1208
PsuI	RGATCY	2 cut(s)	358, 885
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	7 cut(s)	324, 366, 441, 644, 680, 857, 1028
SatI	GCNGC	2 cut(s)	159, 1207
Sau3AI	GATC	7 cut(s)	257, 358, 511, 558, 848, 885, 1162
Sau96I	GGNCC	2 cut(s)	572, 952
SchI	GAGTC	1 cut(s)	1165
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	918
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	1145
SfcI	CTRYAG	1 cut(s)	1204
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	3 cut(s)	440, 856, 917
SmoI	CTYRAG	3 cut(s)	440, 856, 917
Sse9I	AATT	8 cut(s)	6, 21, 46, 60, 430, 488, 658, 798
SspI	AATATT	2 cut(s)	538, 927
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	3 cut(s)	125, 242, 413
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	78, 143, 256, 847
TasI	AATT	8 cut(s)	6, 21, 46, 60, 430, 488, 658, 798
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	7 cut(s)	324, 366, 441, 644, 680, 857, 1028
Tru9I	TTAA	7 cut(s)	324, 366, 441, 644, 680, 857, 1028
TscAI	CASTG	2 cut(s)	130, 909
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	158, 1206
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	7 cut(s)	241, 417, 934, 980, 1050, 1054, 1089
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	130, 909
Vha464I	CTTAAG	2 cut(s)	440, 856
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	4 cut(s)	60, 430, 488, 658
XceI	RCATGY	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	1212
XmnI	GAANNNNTTC	2 cut(s)	865, 1041
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.