Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

5309383 .. 5310780

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08060.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGATCTATATCCCTATCTGCTTGTCAATATTGGTTCTGGTGTCAGCATCGATCAAGGTAGATGGACCTGGTAAGTTTGAGCGAGTGAGTGGAACTAGTGTTGGTGGTGGCACCTTTTGGGGTTTGGGGAAGCTTTTAACAAAGTGCAAGAATTTTGACGAGTTGCTGGAGTTAAGTCATCAGGGAAATAATAGAGTGATAGACATGCTTGTCGGGGACATCTATGGTGGAATGGACTATACAAAGATTGGTCTTGTATCAACAGCCATTGCTTGTAGCTTTGGCAAAGCAATTTCTGATAACAAGGAGCTGGAAGATTACAAACCTGAAGATATTTCTCGGTCCCTCTTAAGAATGATTTCAAATAATATTGGACAGATCTCATACTTGAATGCACTGAGATTTGGGCTCAAGCGAATATTTTTTGCTGGATTTTTCATTAGGGGCCATGCTTACACCATGGACACAATTGCTGTTGCCGTTCATTTCTGGTCTAAAGGTGAAGCAAAAGCGATGTTCTTAAAACACGAAGGATTTCTTGGAGCATTGGGTTCATTCATGAGCTATGAAAAGCATGGTTTTGAGGACTTGAAAGTCCATCAGTCGGTGCAACAATCCCCAGTGGGTGCATCCCTCGGAGGTGATAAGAGTCATGATCCACCAAATGGGGACTTGAACGAAAACCAAAGTATAGACTGCAGCGTCTACCTGTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

241

Amino Acids

26.29

Weight (kDa)

6.65

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	212, 596, 704
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	607, 668
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	366, 394, 595, 679
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	4 cut(s)	136, 282, 313, 567
AluI	AGCT	4 cut(s)	136, 282, 313, 567
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	702
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	361, 537
AspS9I	GGNCC	3 cut(s)	68, 345, 448
AsuHPI	GGTGA	2 cut(s)	515, 656
AvaII	GGWCC	2 cut(s)	68, 345
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	2 cut(s)	59, 609
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	72
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	700
BfrI	CTTAAG	1 cut(s)	352
BglII	AGATCT	2 cut(s)	6, 381
BisI	GCNGC	1 cut(s)	703
BlsI	GCNGC	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	2 cut(s)	68, 345
BmgT120I	GGNCC	3 cut(s)	68, 345, 448
BmiI	GGNNCC	3 cut(s)	115, 347, 449
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	2 cut(s)	59, 641
BmuI	ACTGGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	462, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 668
Bse1I	ACTGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	462, 637
BseGI	GGATG	1 cut(s)	632
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	607, 668
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	714
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	53
BslFI	GGGAC	3 cut(s)	233, 331, 686
BslI	CCNNNNNNNGG	2 cut(s)	607, 668
BsmFI	GGGAC	3 cut(s)	233, 331, 686
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	6, 54, 381, 658
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	393
BspDI	ATCGAT	1 cut(s)	53
BspHI	TCATGA	2 cut(s)	561, 655
BspLI	GGNNCC	3 cut(s)	115, 347, 449
BspMAI	CTGCAG	1 cut(s)	704
BspPI	GGATC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	113
BspTI	CTTAAG	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	462, 637
BssMI	GATC	4 cut(s)	6, 54, 381, 658
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	401
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	632
BstKTI	GATC	4 cut(s)	9, 57, 384, 661
BstMBI	GATC	4 cut(s)	6, 54, 381, 658
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	700
BstV1I	GCAGC	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	6, 381
BstYI	RGATCY	2 cut(s)	6, 381
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	450
BsuTUI	ATCGAT	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	632
BtsIMutI	CAGTG	2 cut(s)	398, 630
CciI	TCATGA	2 cut(s)	561, 655
Cfr13I	GGNCC	3 cut(s)	68, 345, 448
ClaI	ATCGAT	1 cut(s)	53
CseI	GACGC	1 cut(s)	694
CsiI	ACCWGGT	1 cut(s)	70
CviAII	CATG	6 cut(s)	208, 452, 463, 562, 578, 656
CviJI	RGCY	7 cut(s)	136, 269, 282, 313, 412, 450, 567
CviKI_1	RGCY	7 cut(s)	136, 269, 282, 313, 412, 450, 567
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	4 cut(s)	8, 56, 383, 660
DpnII	GATC	4 cut(s)	6, 54, 381, 658
DrdI	GACNNNNNNGTC	3 cut(s)	212, 596, 704
DseDI	GACNNNNNNGTC	3 cut(s)	212, 596, 704
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	68, 345
Eco57I	CTGAAG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	6 cut(s)	211, 455, 466, 565, 581, 659
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	3 cut(s)	233, 331, 686
FatI	CATG	6 cut(s)	207, 451, 462, 561, 577, 655
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	1 cut(s)	703
FokI	GGATG	1 cut(s)	619
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	703
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	703
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	450
HgaI	GACGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	211, 455, 466, 565, 581, 659
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	652
HphI	GGTGA	2 cut(s)	515, 656
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	2 cut(s)	301, 641
Hpy188III	TCNNGA	2 cut(s)	562, 656
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	1 cut(s)	527
HpyCH4V	TGCA	5 cut(s)	150, 398, 613, 632, 702
HpyF3I	CTNAG	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	211, 455, 466, 565, 581, 659
Kzo9I	GATC	4 cut(s)	6, 54, 381, 658
LmnI	GCTCC	2 cut(s)	310, 545
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	2 cut(s)	59, 641
MabI	ACCWGGT	1 cut(s)	70
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	714
MalI	GATC	4 cut(s)	8, 56, 383, 660
MboI	GATC	4 cut(s)	6, 54, 381, 658
MboII	GAAGA	3 cut(s)	16, 329, 344
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	6, 381
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	154, 294, 471
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	4 cut(s)	359, 580, 635, 647
MroXI	GAANNNNTTC	2 cut(s)	361, 537
MseI	TTAA	4 cut(s)	140, 176, 353, 524
MspCI	CTTAAG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	6, 54, 381, 658
NlaIII	CATG	6 cut(s)	211, 455, 466, 565, 581, 659
NlaIV	GGNNCC	3 cut(s)	115, 347, 449
NmuCI	GTSAC	1 cut(s)	714
NspI	RCATGY	1 cut(s)	211
PagI	TCATGA	2 cut(s)	561, 655
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	2 cut(s)	361, 537
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	704
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	115, 347, 449
PspPI	GGNCC	3 cut(s)	68, 345, 448
PstI	CTGCAG	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	6, 381
SaqAI	TTAA	4 cut(s)	140, 176, 353, 524
SatI	GCNGC	1 cut(s)	703
Sau3AI	GATC	4 cut(s)	6, 54, 381, 658
Sau96I	GGNCC	3 cut(s)	68, 345, 448
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	414
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	59, 641
SfcI	CTRYAG	1 cut(s)	700
SinI	GGWCC	2 cut(s)	68, 345
SmlI	CTYRAG	2 cut(s)	352, 413
SmoI	CTYRAG	2 cut(s)	352, 413
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	3 cut(s)	154, 294, 471
SspI	AATATT	3 cut(s)	33, 373, 423
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	462
TaqI	TCGA	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	154, 294, 471
Tru1I	TTAA	4 cut(s)	140, 176, 353, 524
Tru9I	TTAA	4 cut(s)	140, 176, 353, 524
TscAI	CASTG	2 cut(s)	405, 630
TseFI	GTSAC	1 cut(s)	714
TseI	GCWGC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	714
TspDTI	ATGAA	6 cut(s)	17, 430, 476, 546, 550, 585
TspRI	CASTG	2 cut(s)	405, 630
Van91I	CCANNNNNTGG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	68, 345
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	2 cut(s)	361, 537
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.