Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Forward (+)

63719681 .. 63722421

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAATGTCCTGTATATGGTTGCCAACTTGCTACTTGTTCAGTCTCTCACTTTTTCTCTGCTAAAGAAGCTTTCAGATGCACGGTCATTGCCACAGGTGGTGGGGCATACAAGTTTGCGGATCTCTTTAAGGAAAAGCTTGGGATTTGTCTTGGCAAAGAAGATGAAATGGACAGTCTTGTAGCTGGAGCAAATTTTCTGCTTAAGTCAGTTCACGACGAAGCATTTACATACATGGATGGTCAGAAGGAATTTGCGCAGATTGATCAGGAAGATCTATACCCCTATCTCCTGGTTAATATTGGCTCTGGTGTCAGTATGATCAAGGTGGATGGACCTGGTAAATTTGAGCGTGTAAGTGGAACCAATGTGGGTGGTGGCACCTTTTGGGGTTTGGGAAGGCTTTTAACAAAGTGCAAGAGTTTTGATGAGTTGCTGGAGTTAAGTCATCAGGGAAATAATAGAGTGGTAGACATGCTTGTTGGGGACATATATGGTGGCACAGACTATAAAAAGATAGGGCTTTCATCAACTGCCATTGCTTCTAGCTTTGGCAAGGCAATATCTGATAATAAGGAGCTGGAAGATTACAAACCTGAAGATATTTCTCGGTCCCTTTTAAGAATGATTTCAAATAACATTGGACAGATTTCATACTTGAATGCACTAAGGTTTGGGCTCAAGCGCATATTTTTTGCCGGATTTTTCCTTCGGGGTCATGCTTACACCATGGACACCATTGCTGTTGCTGTTCATTTCTGGTCTAAAGGTGAAGCCAAAGCAATGTTTTTAAGGCACGAAGGGTTTCTTGGAGCATTGGGTGCATTCATGAGCTATGAGAAGCATGGCTTTGATAACTTGATGGTCCATCAGTTGGTGCAACAATCCCCAAGTGCATCCCATGGAGGAGATAAAACTCATGGTCCTGCAGACTCAGAATTGAATGACAACCCAAGCATAAATTGCAGTATATACTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

327

Amino Acids

35.83

Weight (kDa)

5.81

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	24 - 277	1.6e-119	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	3 cut(s)	193, 251, 344
AcuI	CTGAAG	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	17, 874
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	633, 661, 943
AjnI	CCWGG	2 cut(s)	291, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	6 cut(s)	71, 139, 185, 549, 580, 834
AluI	AGCT	6 cut(s)	71, 139, 185, 549, 580, 834
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	193, 251, 344
Asp700I	GAANNNNTTC	2 cut(s)	628, 804
AspLEI	GCGC	2 cut(s)	259, 687
AspS9I	GGNCC	4 cut(s)	335, 612, 865, 923
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	4 cut(s)	335, 612, 865, 923
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	681
BccI	CCATC	4 cut(s)	233, 326, 856, 876
BciT130I	CCWGG	2 cut(s)	293, 339
BclI	TGATCA	2 cut(s)	265, 321
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	293, 339
Bme18I	GGWCC	4 cut(s)	335, 612, 865, 923
BmgT120I	GGNCC	4 cut(s)	335, 612, 865, 923
BmiI	GGNNCC	3 cut(s)	364, 382, 614
BmrFI	CCNGG	2 cut(s)	293, 339
BmsI	GCATC	2 cut(s)	68, 905
BpmI	CTGGAG	2 cut(s)	207, 458
BpuEI	CTTGAG	1 cut(s)	665
BsaJI	CCNNGG	2 cut(s)	729, 901
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 874
Bse3DI	GCAATG	4 cut(s)	87, 537, 738, 789
BseBI	CCWGG	2 cut(s)	293, 339
BseDI	CCNNGG	2 cut(s)	729, 901
BseGI	GGATG	3 cut(s)	244, 337, 896
BseLI	CCNNNNNNNGG	2 cut(s)	17, 874
BseMI	GCAATG	4 cut(s)	87, 537, 738, 789
BseMII	CTCAG	1 cut(s)	948
BseRI	GAGGAG	1 cut(s)	921
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	699
BslFI	GGGAC	2 cut(s)	500, 598
BslI	CCNNNNNNNGG	2 cut(s)	17, 874
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	500, 598
BsmI	GAATGC	2 cut(s)	667, 824
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	4 cut(s)	121, 265, 274, 321
Bsp19I	CCATGG	2 cut(s)	729, 901
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	947
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	364, 382, 614
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	4 cut(s)	87, 537, 738, 789
BssECI	CCNNGG	2 cut(s)	729, 901
BssMI	GATC	4 cut(s)	121, 265, 274, 321
BssT1I	CCWWGG	2 cut(s)	729, 901
Bst2UI	CCWGG	2 cut(s)	293, 339
Bst4CI	ACNGT	2 cut(s)	85, 176
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	821, 963
BstDEI	CTNAG	3 cut(s)	668, 934, 981
BstDSI	CCRYGG	2 cut(s)	729, 901
BstF5I	GGATG	3 cut(s)	244, 337, 896
BstHHI	GCGC	2 cut(s)	259, 687
BstKTI	GATC	4 cut(s)	124, 268, 277, 324
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	121, 265, 274, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 821, 963
BstNI	CCWGG	2 cut(s)	293, 339
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	291, 337
BstSFI	CTRYAG	1 cut(s)	927
BstX2I	RGATCY	2 cut(s)	121, 274
BstYI	RGATCY	2 cut(s)	121, 274
BtgI	CCRYGG	2 cut(s)	729, 901
BtsCI	GGATG	3 cut(s)	244, 337, 896
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	2 cut(s)	259, 687
Cfr13I	GGNCC	4 cut(s)	335, 612, 865, 923
CsiI	ACCWGGT	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	8 cut(s)	235, 475, 719, 730, 829, 845, 902, 920
DdeI	CTNAG	3 cut(s)	668, 934, 981
DpnI	GATC	4 cut(s)	123, 267, 276, 323
DpnII	GATC	4 cut(s)	121, 265, 274, 321
Eco130I	CCWWGG	2 cut(s)	729, 901
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	4 cut(s)	335, 612, 865, 923
Eco57I	CTGAAG	1 cut(s)	618
EcoRII	CCWGG	2 cut(s)	291, 337
EcoT14I	CCWWGG	2 cut(s)	729, 901
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	2 cut(s)	729, 901
FaeI	CATG	8 cut(s)	238, 478, 722, 733, 832, 848, 905, 923
FalI	AAGNNNNNCTT	4 cut(s)	792, 824, 833, 865
FaqI	GGGAC	2 cut(s)	500, 598
FatI	CATG	8 cut(s)	234, 474, 718, 729, 828, 844, 901, 919
FbaI	TGATCA	2 cut(s)	265, 321
FblI	GTMKAC	1 cut(s)	471
FokI	GGATG	3 cut(s)	251, 344, 883
FriOI	GRGCYC	1 cut(s)	681
FspBI	CTAG	1 cut(s)	546
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	2 cut(s)	258, 686
GsuI	CTGGAG	2 cut(s)	207, 458
HapII	CCGG	1 cut(s)	699
HhaI	GCGC	2 cut(s)	259, 687
Hin1II	CATG	8 cut(s)	238, 478, 722, 733, 832, 848, 905, 923
Hin6I	GCGC	2 cut(s)	257, 685
HinP1I	GCGC	2 cut(s)	257, 685
HindIII	AAGCTT	2 cut(s)	69, 137
HinfI	GANTC	1 cut(s)	932
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	2 cut(s)	214, 472
Hpy188I	TCNGA	4 cut(s)	77, 246, 568, 937
Hpy188III	TCNNGA	3 cut(s)	215, 269, 829
Hpy8I	GTNNAC	2 cut(s)	214, 472
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	241, 393, 719, 794
HpyCH4III	ACNGT	2 cut(s)	85, 176
HpyCH4V	TGCA	8 cut(s)	81, 417, 665, 824, 880, 896, 929, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 821, 963
HpyF3I	CTNAG	3 cut(s)	668, 934, 981
Hsp92II	CATG	8 cut(s)	238, 478, 722, 733, 832, 848, 905, 923
HspAI	GCGC	2 cut(s)	257, 685
Ksp22I	TGATCA	2 cut(s)	265, 321
Kzo9I	GATC	4 cut(s)	121, 265, 274, 321
LmnI	GCTCC	3 cut(s)	188, 577, 812
LweI	GCATC	2 cut(s)	68, 905
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	1 cut(s)	546
MalI	GATC	4 cut(s)	123, 267, 276, 323
MboI	GATC	4 cut(s)	121, 265, 274, 321
MboII	GAAGA	4 cut(s)	173, 284, 596, 611
MflI	RGATCY	2 cut(s)	121, 274
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	193, 251, 344, 938, 961
MlyI	GAGTC	1 cut(s)	926
MnlI	CCTC	1 cut(s)	899
MroXI	GAANNNNTTC	2 cut(s)	628, 804
MseI	TTAA	7 cut(s)	129, 204, 297, 407, 443, 620, 791
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	293, 339
Mva1269I	GAATGC	2 cut(s)	667, 824
MvaI	CCWGG	2 cut(s)	293, 339
MwoI	GCNNNNNNNGC	3 cut(s)	68, 821, 963
NcoI	CCATGG	2 cut(s)	729, 901
NdeII	GATC	4 cut(s)	121, 265, 274, 321
NlaIII	CATG	8 cut(s)	238, 478, 722, 733, 832, 848, 905, 923
NlaIV	GGNNCC	3 cut(s)	364, 382, 614
NsbI	TGCGCA	1 cut(s)	258
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	2 cut(s)	667, 824
PdmI	GAANNNNTTC	2 cut(s)	628, 804
PflMI	CCANNNNNTGG	1 cut(s)	874
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	291, 337
PspGI	CCWGG	2 cut(s)	291, 337
PspN4I	GGNNCC	3 cut(s)	364, 382, 614
PspPI	GGNCC	4 cut(s)	335, 612, 865, 923
PstI	CTGCAG	1 cut(s)	931
PsuI	RGATCY	2 cut(s)	121, 274
SaqAI	TTAA	7 cut(s)	129, 204, 297, 407, 443, 620, 791
Sau3AI	GATC	4 cut(s)	121, 265, 274, 321
Sau96I	GGNCC	4 cut(s)	335, 612, 865, 923
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	2 cut(s)	293, 339
SduI	GDGCHC	1 cut(s)	681
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	68, 905
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	4 cut(s)	335, 612, 865, 923
SmlI	CTYRAG	2 cut(s)	203, 680
SmoI	CTYRAG	2 cut(s)	203, 680
Sse9I	AATT	5 cut(s)	193, 251, 344, 938, 961
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	291, 337
StyI	CCWWGG	2 cut(s)	729, 901
TaaI	ACNGT	2 cut(s)	85, 176
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	193, 251, 344, 938, 961
Tru1I	TTAA	7 cut(s)	129, 204, 297, 407, 443, 620, 791
Tru9I	TTAA	7 cut(s)	129, 204, 297, 407, 443, 620, 791
TspDTI	ATGAA	5 cut(s)	180, 516, 642, 743, 817
Van91I	CCANNNNNTGG	1 cut(s)	874
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	4 cut(s)	335, 612, 865, 923
XapI	RAATTY	3 cut(s)	193, 251, 344
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	2 cut(s)	628, 804
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.