Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Forward (+)

62389739 .. 62393220

Gene Structure 3482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAAATCGGGAACCTTGAAAATCACGTACAATCAGAACCCATGGAGGAATCATCGCAAGCTCAAATTTCCCATCTTGCTTTGGATATTGGAGGCTCTTTGATTAAGCTGGTCTATTTTTCACAAAACAGTGATGGTGGTTGTTCAAAGAGTAGCGTACAAGTTTCTAATGGAAATGAAGGTGGTCCTGTTCTTCAAGGGAAGCTCCATTTTGCGAAATTTGAAACGGCTAAAATACATGATTGCATAGACTTCATTCAATCCAAGCAACTTCGCGTTACTGGCTGCCAGCATAATGGTGCTTCTGCCAATGAGAAGTGCGTTATTAAGGCCACAGGTGGTGGGGCATACAAGTTCGCGGATCTCTTTAAAGAAAAACTTGGGATTTGTCTTGGCAAAGAAGATGAAATGGACAGTCTTGTAGCTGGAGCAAATTTTCTGCTTAAGTCAGTTCACAACGAAGCATTTACATACATGGATGGTCAGAAGGAATTTGCGCAGATTGATCAGGAAGATCTATACCCCTATCTCCTGGTTAATATTGGCTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAATTTGAGCGTGTAAGTGGAACCAATGTGGGTGGTGGCACCTTTTGGGGTTTAGGAAGGCTTTTAACAAAGTGCAAGAGTTTTGATGAGTTGCTGGAGTTAAGTCATCGGGGAAATAATAGAGTGGTAGACATGCTTGTTGGGGACATATACGGTGGCACAGACTATAAAAAGATAGGCCTTTCATCAACTGCCATTGCTTCTAGCTTTGGCAAGGCAATATCTGATAATAAGGAGCTGGAAGATTACAAACCTGAAGATATTTCTCGGTCCCTTTTAAGAATGATTTCAAATAACATTGGACAGATTTCATACTTGAATGCACTAAGGTTTGGGCTCAAGCGCATATTTTTTGCGGGATTTTTCCTTCGGGGTCATGCTTACACCATGGACACCATTGCTGTTGCTGTTCATTTCTGGTCTAAAGGTGAAGCCAAAGCAATGTTTTTAAGGCACGAAGGGTTTCTTGGAGCATTGGGTGCATTCATGAGCTATGAGAAGCATGGCTTTGATAACTTGATGGTCCATCAGTTGGTGCAACAATCCCCAAGTGCATCCCATGGAGGAGATAAAACTCATGGTCCTGCAGACTCGGAATTGAATGACAACCCAAGCATAAATTGCAGTATATACTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

407

Amino Acids

44.37

Weight (kDa)

5.97

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	25 - 357	7.7e-138	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	620
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	2 cut(s)	276, 359
AciI	CCGC	2 cut(s)	359, 938
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	5 cut(s)	66, 218, 433, 491, 584
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	2 cut(s)	30, 159
AfiI	CCNNNNNNNGG	1 cut(s)	1114
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	8 cut(s)	20, 147, 197, 224, 260, 873, 901, 1183
AjnI	CCWGG	2 cut(s)	531, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	1032, 1064
AluBI	AGCT	7 cut(s)	62, 109, 205, 425, 789, 820, 1074
AluI	AGCT	7 cut(s)	62, 109, 205, 425, 789, 820, 1074
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	330, 760
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	5 cut(s)	66, 218, 433, 491, 584
Asp700I	GAANNNNTTC	2 cut(s)	868, 1044
AspLEI	GCGC	2 cut(s)	499, 927
AspS9I	GGNCC	5 cut(s)	185, 575, 852, 1105, 1163
AsuHPI	GGTGA	1 cut(s)	1022
AvaII	GGWCC	5 cut(s)	185, 575, 852, 1105, 1163
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	921
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	6 cut(s)	81, 128, 473, 566, 1096, 1116
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	533, 579
BclI	TGATCA	2 cut(s)	505, 561
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	1167
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	533, 579
Bme18I	GGWCC	5 cut(s)	185, 575, 852, 1105, 1163
BmgT120I	GGNCC	5 cut(s)	185, 575, 852, 1105, 1163
BmiI	GGNNCC	4 cut(s)	14, 604, 622, 854
BmrFI	CCNGG	2 cut(s)	533, 579
BmsI	GCATC	1 cut(s)	1145
BpmI	CTGGAG	2 cut(s)	447, 698
BpuEI	CTTGAG	1 cut(s)	905
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	42, 969, 1141
Bsc4I	CCNNNNNNNGG	1 cut(s)	1114
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	3 cut(s)	777, 978, 1029
BseBI	CCWGG	2 cut(s)	533, 579
BseDI	CCNNGG	3 cut(s)	42, 969, 1141
BseGI	GGATG	2 cut(s)	484, 1136
BseLI	CCNNNNNNNGG	1 cut(s)	1114
BseMI	GCAATG	3 cut(s)	777, 978, 1029
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	1161
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	276, 359
BshFI	GGCC	2 cut(s)	332, 762
BshNI	GGYRCC	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	740, 838
BslI	CCNNNNNNNGG	1 cut(s)	1114
BsmFI	GGGAC	2 cut(s)	740, 838
BsmI	GAATGC	2 cut(s)	907, 1064
BsnI	GGCC	2 cut(s)	332, 762
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	4 cut(s)	361, 505, 514, 561
Bsp19I	CCATGG	3 cut(s)	42, 969, 1141
BspACI	CCGC	2 cut(s)	359, 938
BspANI	GGCC	2 cut(s)	332, 762
BspFNI	CGCG	2 cut(s)	276, 359
BspHI	TCATGA	1 cut(s)	1068
BspLI	GGNNCC	4 cut(s)	14, 604, 622, 854
BspMAI	CTGCAG	1 cut(s)	1171
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	3 cut(s)	777, 978, 1029
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	42, 969, 1141
BssMI	GATC	4 cut(s)	361, 505, 514, 561
BssT1I	CCWWGG	3 cut(s)	42, 969, 1141
Bst2UI	CCWGG	2 cut(s)	533, 579
Bst4CI	ACNGT	3 cut(s)	131, 416, 737
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	2 cut(s)	1061, 1203
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	60, 290
BstDEI	CTNAG	2 cut(s)	908, 1221
BstDSI	CCRYGG	3 cut(s)	42, 969, 1141
BstF5I	GGATG	2 cut(s)	484, 1136
BstFNI	CGCG	2 cut(s)	276, 359
BstHHI	GCGC	2 cut(s)	499, 927
BstKTI	GATC	4 cut(s)	364, 508, 517, 564
BstMBI	GATC	4 cut(s)	361, 505, 514, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 1061, 1203
BstNI	CCWGG	2 cut(s)	533, 579
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	2 cut(s)	531, 577
BstSFI	CTRYAG	1 cut(s)	1167
BstUI	CGCG	2 cut(s)	276, 359
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	361, 514
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	2 cut(s)	361, 514
BsuRI	GGCC	2 cut(s)	332, 762
BtgI	CCRYGG	3 cut(s)	42, 969, 1141
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	484, 1136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	60, 290
CciI	TCATGA	1 cut(s)	1068
CfoI	GCGC	2 cut(s)	499, 927
Cfr13I	GGNCC	5 cut(s)	185, 575, 852, 1105, 1163
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	29, 158
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviQI	GTAC	2 cut(s)	29, 158
DdeI	CTNAG	2 cut(s)	908, 1221
DpnI	GATC	4 cut(s)	363, 507, 516, 563
DpnII	GATC	4 cut(s)	361, 505, 514, 561
DraI	TTTAAA	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	42, 969, 1141
Eco147I	AGGCCT	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	5 cut(s)	185, 575, 852, 1105, 1163
Eco57I	CTGAAG	1 cut(s)	858
EcoRII	CCWGG	2 cut(s)	531, 577
EcoT14I	CCWWGG	3 cut(s)	42, 969, 1141
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	3 cut(s)	42, 969, 1141
FalI	AAGNNNNNCTT	6 cut(s)	363, 395, 1032, 1064, 1073, 1105
FaqI	GGGAC	2 cut(s)	740, 838
FauI	CCCGC	1 cut(s)	931
FbaI	TGATCA	2 cut(s)	505, 561
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	2 cut(s)	491, 1123
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	786
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 926
GluI	GCNGC	1 cut(s)	286
GsuI	CTGGAG	2 cut(s)	447, 698
HaeIII	GGCC	2 cut(s)	332, 762
HhaI	GCGC	2 cut(s)	499, 927
Hin6I	GCGC	2 cut(s)	497, 925
HinP1I	GCGC	2 cut(s)	497, 925
HinfI	GANTC	2 cut(s)	50, 1172
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	2 cut(s)	454, 712
Hpy188I	TCNGA	4 cut(s)	37, 486, 808, 1177
Hpy188III	TCNNGA	3 cut(s)	10, 509, 1069
Hpy8I	GTNNAC	2 cut(s)	454, 712
HpyAV	CCTTC	5 cut(s)	173, 481, 633, 959, 1034
HpyCH4III	ACNGT	3 cut(s)	131, 416, 737
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	8 cut(s)	246, 657, 905, 1064, 1120, 1136, 1169, 1206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 1061, 1203
HpyF3I	CTNAG	2 cut(s)	908, 1221
HpySE526I	ACGT	1 cut(s)	27
HspAI	GCGC	2 cut(s)	497, 925
Ksp22I	TGATCA	2 cut(s)	505, 561
Kzo9I	GATC	4 cut(s)	361, 505, 514, 561
LmnI	GCTCC	4 cut(s)	210, 428, 817, 1052
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	1145
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	363, 507, 516, 563
MboI	GATC	4 cut(s)	361, 505, 514, 561
MboII	GAAGA	5 cut(s)	185, 413, 524, 836, 851
MflI	RGATCY	2 cut(s)	361, 514
MhlI	GDGCHC	1 cut(s)	921
MluCI	AATT	7 cut(s)	66, 218, 433, 491, 584, 1178, 1201
MlyI	GAGTC	1 cut(s)	1166
MnlI	CCTC	3 cut(s)	40, 86, 1139
MroXI	GAANNNNTTC	2 cut(s)	868, 1044
MseI	TTAA	9 cut(s)	105, 327, 369, 444, 537, 647, 683, 860, 1031
MslI	CAYNNNNRTG	1 cut(s)	297
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	533, 579
Mva1269I	GAATGC	2 cut(s)	907, 1064
MvaI	CCWGG	2 cut(s)	533, 579
MvnI	CGCG	2 cut(s)	276, 359
MwoI	GCNNNNNNNGC	3 cut(s)	282, 1061, 1203
NcoI	CCATGG	3 cut(s)	42, 969, 1141
NdeII	GATC	4 cut(s)	361, 505, 514, 561
NlaIV	GGNNCC	4 cut(s)	14, 604, 622, 854
NsbI	TGCGCA	1 cut(s)	498
NspI	RCATGY	1 cut(s)	718
PagI	TCATGA	1 cut(s)	1068
PceI	AGGCCT	1 cut(s)	762
PctI	GAATGC	2 cut(s)	907, 1064
PdmI	GAANNNNTTC	2 cut(s)	868, 1044
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	1166
PpsI	GAGTC	1 cut(s)	1166
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	531, 577
PspGI	CCWGG	2 cut(s)	531, 577
PspN4I	GGNNCC	4 cut(s)	14, 604, 622, 854
PspPI	GGNCC	5 cut(s)	185, 575, 852, 1105, 1163
PstI	CTGCAG	1 cut(s)	1171
PsuI	RGATCY	2 cut(s)	361, 514
RsaI	GTAC	2 cut(s)	30, 159
RsaNI	GTAC	2 cut(s)	29, 158
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	9 cut(s)	105, 327, 369, 444, 537, 647, 683, 860, 1031
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	4 cut(s)	361, 505, 514, 561
Sau96I	GGNCC	5 cut(s)	185, 575, 852, 1105, 1163
SchI	GAGTC	1 cut(s)	1166
ScrFI	CCNGG	2 cut(s)	533, 579
SduI	GDGCHC	1 cut(s)	921
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	1145
SfcI	CTRYAG	1 cut(s)	1167
SinI	GGWCC	5 cut(s)	185, 575, 852, 1105, 1163
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	443, 920
SmoI	CTYRAG	2 cut(s)	443, 920
Sse9I	AATT	7 cut(s)	66, 218, 433, 491, 584, 1178, 1201
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	2 cut(s)	359, 938
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	786
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	531, 577
StyI	CCWWGG	3 cut(s)	42, 969, 1141
TaaI	ACNGT	3 cut(s)	131, 416, 737
TaiI	ACGT	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	840
TasI	AATT	7 cut(s)	66, 218, 433, 491, 584, 1178, 1201
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	9 cut(s)	105, 327, 369, 444, 537, 647, 683, 860, 1031
Tru9I	TTAA	9 cut(s)	105, 327, 369, 444, 537, 647, 683, 860, 1031
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	7 cut(s)	192, 244, 420, 756, 882, 983, 1057
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	1114
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	5 cut(s)	185, 575, 852, 1105, 1163
XapI	RAATTY	5 cut(s)	66, 218, 433, 491, 584
XceI	RCATGY	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	711
XmnI	GAANNNNTTC	2 cut(s)	868, 1044
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.