Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

10022717 .. 10026699

Gene Structure 3983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1093400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATCCTCTCCTCGTGGGCTGTCCTCCAGTGTTCTTTGATAGAATTGGTGTATTTCTCAACGAACAGTGACGATTCGTCTTCTTTGAATGAGAGTTTAGCAGCTTCTAATGGCGATAGAGGGCGTCCTGTTCTTGAAGGGAAGCTCCATTTTGCAAAGTTTGAAACTCAGAAAATCAATGACTGTATAGACTTCATTCGATCCAAGCAACTTCGCCTTACTGGCTCCCAACAACACGGAGCTTCTGGGAGCGCCAAGTGCGTTATTAAGGCCACAGGTGGTGGGGCATTAAGTACGCAGATCTTTTTAAAGAAAAGCTTGGGATTTCTCTTGACAAGGCAGATGAAATGGACTGTTTTGTGGCCGGAGCAAATTTTCTGCTTAAGGTGGGATCCTAAAACCACTTACATTCAGTCTAATCCTGTTATCTTCAGTACTTACTGTAAGCATTTGGGTCTACTTACTAGTTGTACAGCTAATTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

9.03

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	11 - 114	3.1e-13	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	457
AclWI	GGATC	3 cut(s)	195, 386, 399
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	3 cut(s)	295, 436, 472
AflII	CTTAAG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	88, 137, 164
AhdI	GACNNNNNGTC	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	464
AluBI	AGCT	5 cut(s)	104, 145, 242, 318, 476
AluI	AGCT	5 cut(s)	104, 145, 242, 318, 476
AlwI	GGATC	3 cut(s)	195, 386, 399
AoxI	GGCC	2 cut(s)	270, 362
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	113
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	226, 393
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	28, 226
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	28, 226
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	272, 364
BsiSI	CCGG	1 cut(s)	365
BsnI	GGCC	2 cut(s)	272, 364
Bsp1407I	TGTACA	1 cut(s)	470
Bsp143I	GATC	4 cut(s)	3, 200, 300, 391
BspANI	GGCC	2 cut(s)	272, 364
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	226, 393
BspPI	GGATC	3 cut(s)	195, 386, 399
BspTI	CTTAAG	1 cut(s)	382
BsrGI	TGTACA	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	28, 226
BssMI	GATC	4 cut(s)	3, 200, 300, 391
BssNI	GRCGYC	1 cut(s)	124
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	68, 185, 355, 443
BstACI	GRCGYC	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	6, 203, 303, 394
BstMBI	GATC	4 cut(s)	3, 200, 300, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 258
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	300, 391
BstYI	RGATCY	2 cut(s)	300, 391
BsuRI	GGCC	2 cut(s)	272, 364
BtsIMutI	CAGTG	2 cut(s)	35, 73
CfoI	GCGC	1 cut(s)	254
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	294, 435, 471
CviJI	RGCY	9 cut(s)	20, 104, 145, 225, 242, 272, 318, 364, 476
CviKI_1	RGCY	9 cut(s)	20, 104, 145, 225, 242, 272, 318, 364, 476
CviQI	GTAC	3 cut(s)	294, 435, 471
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	5, 202, 302, 393
DpnII	GATC	4 cut(s)	3, 200, 300, 391
DraI	TTTAAA	1 cut(s)	309
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	362
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	415
FaiI	YATR	2 cut(s)	188, 487
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	272, 364
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	134, 331
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	4 cut(s)	68, 185, 355, 443
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 258
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	124
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	3, 200, 300, 391
LmnI	GCTCC	5 cut(s)	150, 230, 239, 249, 367
LpnPI	CCDG	7 cut(s)	41, 141, 207, 231, 261, 378, 435
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	5, 202, 302, 393
MboI	GATC	4 cut(s)	3, 200, 300, 391
MboII	GAAGA	2 cut(s)	72, 421
MflI	RGATCY	2 cut(s)	300, 391
MluCI	AATT	3 cut(s)	44, 372, 478
MnlI	CCTC	4 cut(s)	17, 22, 35, 113
MseI	TTAA	4 cut(s)	267, 290, 308, 383
MspCI	CTTAAG	1 cut(s)	382
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	222, 258
NdeII	GATC	4 cut(s)	3, 200, 300, 391
NlaIV	GGNNCC	2 cut(s)	226, 393
NmuCI	GTSAC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	226, 393
PsuI	RGATCY	2 cut(s)	300, 391
RsaI	GTAC	3 cut(s)	295, 436, 472
RsaNI	GTAC	3 cut(s)	294, 435, 471
SaqAI	TTAA	4 cut(s)	267, 290, 308, 383
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	4 cut(s)	3, 200, 300, 391
ScaI	AGTACT	1 cut(s)	436
SetI	ASST	7 cut(s)	106, 147, 244, 280, 320, 389, 478
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	3 cut(s)	44, 372, 478
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	68, 185, 355, 443
TaqI	TCGA	1 cut(s)	199
TasI	AATT	3 cut(s)	44, 372, 478
TatI	WGTACW	2 cut(s)	434, 470
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	4 cut(s)	267, 290, 308, 383
Tru9I	TTAA	4 cut(s)	267, 290, 308, 383
TscAI	CASTG	2 cut(s)	35, 73
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	184, 359
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	35, 73
Vha464I	CTTAAG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	457
XspI	CTAG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.