FvH4_4g34190

Pantothenate kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
32110791 .. 32111585
795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34190.t1

Sequence Viewer

Length: 426 bp
ATGGACATTCATTGTGAGAATAACCCTTTTCAACTTCTATATGGTTGCCAATATGTTACTTGTTCAGTCTCTCATTTGATCACTGTTAAAGAAGCTTTCAGATGCACTGTCATTGTAGTAATTAGTTCTCGTAGTTCTGGTCATTTGCTTATCATTGTAGACAATGTTTCACGGTGCCAGCATAATGGTGCTTCTGCCAATGAGGAGTGCGTTATTAAGGTGGTGGAGCTTACAATTTTGCGGATCTCTTTAAAGAAAAGCTTGACAGAGGTCTGTCTTAGCAAGGAAGATGAAATGGACAGTCTTGTAGCTGGAGCAAATTTTCTGCTTAAGGATGGCAAGGAAATATGGATGCATGGGAGGAACTATGATATGGCAATGGCTCCAGTCCCCCCAACGGTGGAGGGAGGCATGAGTCGGATATAA

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

5.92

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 397, 400
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 4 cut(s) 95, 229, 261, 311
AluI AGCT 4 cut(s) 95, 229, 261, 311
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 319
BanI GGYRCC 1 cut(s) 174
BccI CCATC 1 cut(s) 329
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 176, 384
BmsI GCATC 2 cut(s) 92, 342
BoxI GACNNNNGTC 1 cut(s) 269
BpmI CTGGAG 2 cut(s) 333, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 400
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 384
BseGI GGATG 2 cut(s) 340, 357
BseLI CCNNNNNNNGG 2 cut(s) 397, 400
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 174
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 397, 400
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 374
Bsp143I GATC 2 cut(s) 78, 243
BspACI CCGC 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 176, 384
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 386
BssMI GATC 2 cut(s) 78, 243
Bst4CI ACNGT 5 cut(s) 85, 109, 174, 302, 400
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 340, 357
BstKTI GATC 2 cut(s) 81, 246
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 78, 243
BstPAI GACNNNNGTC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 243
BtsCI GGATG 2 cut(s) 340, 357
BtsIMutI CAGTG 2 cut(s) 81, 105
Cac8I GCNNGC 1 cut(s) 179
CviAII CATG 2 cut(s) 356, 412
CviJI RGCY 5 cut(s) 95, 229, 261, 311, 383
CviKI_1 RGCY 5 cut(s) 95, 229, 261, 311, 383
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 80, 245
DpnII GATC 2 cut(s) 78, 243
DraI TTTAAA 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 357
FaeI CATG 2 cut(s) 359, 415
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 374
FatI CATG 2 cut(s) 355, 411
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 159
FokI GGATG 2 cut(s) 347, 364
GsuI CTGGAG 2 cut(s) 333, 369
Hin1II CATG 2 cut(s) 359, 415
HindIII AAGCTT 2 cut(s) 93, 259
HinfI GANTC 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 101, 420
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4III ACNGT 5 cut(s) 85, 109, 174, 302, 400
HpyCH4V TGCA 2 cut(s) 105, 355
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 359, 415
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 243
LmnI GCTCC 3 cut(s) 226, 314, 388
LpnPI CCDG 4 cut(s) 123, 191, 297, 399
LweI GCATC 2 cut(s) 92, 342
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 80, 245
MboI GATC 2 cut(s) 78, 243
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 243
MluCI AATT 3 cut(s) 120, 234, 319
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 5 cut(s) 196, 262, 354, 397, 401
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 4 cut(s) 87, 216, 251, 330
MslI CAYNNNNRTG 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 329
NdeII GATC 2 cut(s) 78, 243
NlaIII CATG 2 cut(s) 359, 415
NlaIV GGNNCC 2 cut(s) 176, 384
NsiI ATGCAT 1 cut(s) 357
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PshAI GACNNNNGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 176, 384
PsuI RGATCY 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 4 cut(s) 87, 216, 251, 330
Sau3AI GATC 2 cut(s) 78, 243
SchI GAGTC 1 cut(s) 424
SetI ASST 6 cut(s) 97, 222, 231, 263, 273, 313
SfaNI GCATC 2 cut(s) 92, 342
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 120, 234, 319
SsiI CCGC 1 cut(s) 241
TaaI ACNGT 5 cut(s) 85, 109, 174, 302, 400
TasI AATT 3 cut(s) 120, 234, 319
Tru1I TTAA 4 cut(s) 87, 216, 251, 330
Tru9I TTAA 4 cut(s) 87, 216, 251, 330
TscAI CASTG 2 cut(s) 88, 112
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 88, 112
Vha464I CTTAAG 1 cut(s) 329
XapI RAATTY 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.