Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

6596691 .. 6599804

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1093600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAACTGGGAGCACTAAACTTACAGAGATTTCAAAACCCACCAATTCGGAAGCTCAAATTTCCCACCTTGCTCTCGATATTGGAGGTTCTTTGATAAAGTTGGTGTATTTCTCAACGAACAGTGTCGACTCTTCTTCTTCTTCGAATGAGAGTTTAGCAGCTTCTAATGGCGATAGAGGGCGCCATGTTCTTGAAGGGAAGCTCCATTTTGCAAAGTTTGAAACTGAGAAAATCAATGACTGTATAGACTTCATTCGGTCCAAGCAACTTCTCCTTGCTGGCTCCCAACAAGAAGGAGCTTCTGGGAGCGCGAAGTGCGTTATCAAGGCCACAGGCGGTGGGGCATACAAATTCCCAGATCTCTTCAAAGAAAAGCTTGGGATTTCTCTTGACAAGGCAGATGAAATGGACTGTCTTGTGGCCGGATCAAATTTTCTGCTCAAGGCGGTTCAACGCGAAGCATTCACATACATGGATGGTCAGAGAGAATTTGTGAAGATTGACCATGATGATCTATATCCTTATCTGCTTGTCAATATTGGCTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAGTTTGAGCGAGTAAGTGGAACCAGTGTTGGTGGTGGAACCTTTTGGGGTTTGGGGAAGCTTTTAACAAAGTGCAAGAATTTTGACGAGTTGCTCGAGTTAAGTCATCAGGGAAATAATAGAGTGATAGACATGCTTGTCGGGGACATCTATGGTGGAATGGACTATACAAAGATTGGTCTTATATCAACAGCCATTGCTTCTAGCTTCAGCAAGGTAATTTCTGACGATAAGGAGCTGAAAGATTACAAACCTGAAGATATTTCTCGGTCCCTCTTAAGAATGATTTCAAATAATATTGGACAGATCTCATACTTGAATGCACTGAGATTCGGGCTCAAGCGAATAATTTTTGCCGGATTTTTTATTCGGGGTCATGCTTACACCATGGACACGATTGCTGTTGGCGTTCATTTCTGGTCTAAAGGTGAAGCAAAAGCAATGTTCTTAAAACGCCGAAGGATTTCTTGGAGCATTGGGTTCATTCATGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

360

Amino Acids

39.45

Weight (kDa)

8.18

Isoelectric Point (pI)

21.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	23 - 345	7.2e-129	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	314, 459
AciI	CCGC	2 cut(s)	339, 449
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	5 cut(s)	60, 353, 433, 491, 661
AcuI	CTGAAG	2 cut(s)	775, 858
AcyI	GRCGYC	1 cut(s)	184
AflII	CTTAAG	1 cut(s)	859
AgsI	TTSAA	7 cut(s)	36, 197, 224, 370, 455, 873, 901
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	1033, 1065
AluBI	AGCT	9 cut(s)	56, 164, 205, 302, 379, 643, 789, 820, 1075
AluI	AGCT	9 cut(s)	56, 164, 205, 302, 379, 643, 789, 820, 1075
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	2 cut(s)	330, 423
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	5 cut(s)	60, 353, 433, 491, 661
Asp700I	GAANNNNTTC	2 cut(s)	868, 1045
AspLEI	GCGC	2 cut(s)	186, 314
AspS9I	GGNCC	3 cut(s)	261, 575, 852
AsuHPI	GGTGA	1 cut(s)	1022
AsuII	TTCGAA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	3 cut(s)	261, 575, 852
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	473, 566
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	561
BfaI	CTAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	187
BfrI	CTTAAG	1 cut(s)	859
BglII	AGATCT	2 cut(s)	361, 888
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	3 cut(s)	261, 575, 852
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	261, 575, 852
BmiI	GGNNCC	5 cut(s)	185, 286, 604, 622, 854
BmrFI	CCNGG	1 cut(s)	579
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	428, 905
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	969
Bse1I	ACTGG	2 cut(s)	13, 606
Bse3DI	GCAATG	2 cut(s)	777, 1029
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	519
BseMI	GCAATG	2 cut(s)	777, 1029
BseMII	CTCAG	2 cut(s)	219, 899
BseNI	ACTGG	2 cut(s)	13, 606
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	314, 459
BshFI	GGCC	2 cut(s)	332, 425
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	2 cut(s)	426, 939
BslFI	GGGAC	2 cut(s)	740, 838
BsmFI	GGGAC	2 cut(s)	740, 838
BsmI	GAATGC	2 cut(s)	464, 907
BsnI	GGCC	2 cut(s)	332, 425
BsoBI	CYCGRG	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	17, 921
Bsp143I	GATC	5 cut(s)	361, 428, 514, 561, 888
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	2 cut(s)	339, 449
BspANI	GGCC	2 cut(s)	332, 425
BspCNI	CTCAG	2 cut(s)	220, 900
BspFNI	CGCG	2 cut(s)	314, 459
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	5 cut(s)	185, 286, 604, 622, 854
BspPI	GGATC	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	859
BsrDI	GCAATG	2 cut(s)	777, 1029
BsrI	ACTGG	2 cut(s)	13, 606
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	5 cut(s)	361, 428, 514, 561, 888
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	969
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	125, 245, 416
Bst6I	CTCTTC	2 cut(s)	139, 371
BstACI	GRCGYC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	859
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	228, 908
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	314, 459
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	186, 314
BstKTI	GATC	5 cut(s)	364, 431, 517, 564, 891
BstMBI	GATC	5 cut(s)	361, 428, 514, 561, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	577
BstUI	CGCG	2 cut(s)	314, 459
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	361, 888
BstYI	RGATCY	2 cut(s)	361, 888
BsuRI	GGCC	2 cut(s)	332, 425
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	3 cut(s)	130, 613, 905
Cac8I	GCNNGC	1 cut(s)	283
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	2 cut(s)	186, 314
Cfr13I	GGNCC	3 cut(s)	261, 575, 852
CsiI	ACCWGGT	1 cut(s)	577
CviAII	CATG	7 cut(s)	188, 475, 509, 715, 959, 970, 1070
DdeI	CTNAG	2 cut(s)	228, 908
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	5 cut(s)	363, 430, 516, 563, 890
DpnII	GATC	5 cut(s)	361, 428, 514, 561, 888
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	139, 371
EarI	CTCTTC	2 cut(s)	139, 371
Eco130I	CCWWGG	1 cut(s)	969
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	3 cut(s)	261, 575, 852
Eco57I	CTGAAG	2 cut(s)	775, 858
Eco88I	CYCGRG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	969
EcoT38I	GRGCYC	1 cut(s)	921
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	7 cut(s)	191, 478, 512, 718, 962, 973, 1073
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 1033, 1065
FaqI	GGGAC	2 cut(s)	740, 838
FatI	CATG	7 cut(s)	187, 474, 508, 714, 958, 969, 1069
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	2 cut(s)	185, 313
GluI	GCNGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	332, 425
HapII	CCGG	2 cut(s)	426, 939
HhaI	GCGC	2 cut(s)	186, 314
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	7 cut(s)	191, 478, 512, 718, 962, 973, 1073
Hin6I	GCGC	2 cut(s)	184, 312
HinP1I	GCGC	2 cut(s)	184, 312
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	377, 641
HinfI	GANTC	2 cut(s)	131, 912
HpaII	CCGG	2 cut(s)	426, 939
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	52, 486, 808
Hpy188III	TCNNGA	4 cut(s)	77, 194, 392, 1070
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	191, 290, 1035
HpyCH4III	ACNGT	3 cut(s)	125, 245, 416
HpyCH4V	TGCA	3 cut(s)	215, 657, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	228, 908
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	7 cut(s)	191, 478, 512, 718, 962, 973, 1073
HspAI	GCGC	2 cut(s)	184, 312
KasI	GGCGCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	361, 428, 514, 561, 888
LmnI	GCTCC	7 cut(s)	12, 210, 290, 299, 309, 817, 1053
Lsp1109I	GCAGC	1 cut(s)	173
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	786
MalI	GATC	5 cut(s)	363, 430, 516, 563, 890
MboI	GATC	5 cut(s)	361, 428, 514, 561, 888
MboII	GAAGA	7 cut(s)	126, 129, 132, 135, 358, 511, 851
MflI	RGATCY	2 cut(s)	361, 888
MhlI	GDGCHC	2 cut(s)	17, 921
MluCI	AATT	8 cut(s)	46, 60, 353, 433, 491, 661, 801, 930
Mly113I	GGCGCC	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	80, 173, 866
MroXI	GAANNNNTTC	2 cut(s)	868, 1045
MseI	TTAA	4 cut(s)	647, 683, 860, 1031
MslI	CAYNNNNRTG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	2 cut(s)	426, 939
MspR9I	CCNGG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	464, 907
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	2 cut(s)	314, 459
MwoI	GCNNNNNNNGC	1 cut(s)	318
NarI	GGCGCC	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	5 cut(s)	361, 428, 514, 561, 888
NlaIII	CATG	7 cut(s)	191, 478, 512, 718, 962, 973, 1073
NlaIV	GGNNCC	5 cut(s)	185, 286, 604, 622, 854
NspI	RCATGY	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	677
PagI	TCATGA	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	2 cut(s)	464, 907
PdmI	GAANNNNTTC	2 cut(s)	868, 1045
PfeI	GAWTC	1 cut(s)	912
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	125
PluTI	GGCGCC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	5 cut(s)	185, 286, 604, 622, 854
PspPI	GGNCC	3 cut(s)	261, 575, 852
PspXI	VCTCGAGB	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	361, 888
RseI	CAYNNNNRTG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	647, 683, 860, 1031
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	5 cut(s)	361, 428, 514, 561, 888
Sau96I	GGNCC	3 cut(s)	261, 575, 852
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	2 cut(s)	17, 921
SexAI	ACCWGGT	1 cut(s)	577
SfoI	GGCGCC	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	3 cut(s)	261, 575, 852
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	4 cut(s)	443, 677, 859, 920
SmoI	CTYRAG	4 cut(s)	443, 677, 859, 920
Sse9I	AATT	8 cut(s)	46, 60, 353, 433, 491, 661, 801, 930
SsiI	CCGC	2 cut(s)	339, 449
SspDI	GGCGCC	1 cut(s)	183
SspI	AATATT	2 cut(s)	541, 880
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	3 cut(s)	125, 245, 416
TaqI	TCGA	4 cut(s)	78, 129, 146, 678
TaqII	GACCGA	2 cut(s)	249, 840
TasI	AATT	8 cut(s)	46, 60, 353, 433, 491, 661, 801, 930
TfiI	GAWTC	1 cut(s)	912
Tru1I	TTAA	4 cut(s)	647, 683, 860, 1031
Tru9I	TTAA	4 cut(s)	647, 683, 860, 1031
TscAI	CASTG	3 cut(s)	130, 613, 912
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	5 cut(s)	244, 420, 983, 1054, 1058
TspRI	CASTG	3 cut(s)	130, 613, 912
Vha464I	CTTAAG	1 cut(s)	859
VpaK11BI	GGWCC	3 cut(s)	261, 575, 852
XapI	RAATTY	5 cut(s)	60, 353, 433, 491, 661
XceI	RCATGY	1 cut(s)	718
XhoI	CTCGAG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	868, 1045
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.