Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

5417224 .. 5418893

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACTGTCTTGTGGCCGGATCAAATTTTCTGCTCAAGGCAGTTCACCCCGAAGCATTCACATACATGGATGGTCAAAAGGAATTTGTGAAGATTGACCATGATGATCTATATCCTTATCTGCTTGTCAACATTGGTTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAGTTTGAGCGAGTAAGTGGAACCAATGTTGGTGGTGGAACCTTTTGGGGTTTGGGGAAGCTTTTAACAAAATGCAAGAATTTTGACGAGTTGCTCGAGTTAAGTCATCAGGGAAATAATAGAGTGATAGACATGCTTGTCGGGGACATCTATGGTGGAATGGACTATACAAAGATTGGTCTTATATCAACAGCCATTGCTTCTAGCTTCGGCAAGGTAATTTCTGACGATAAGGAGCTGAAGGATTACAAATCTGAAGATATTTCTCGGTCACTCTTAAGAATGATTTCAAATAATATTGGGCAGATCTCATACTTGAATGCACTGAGATTCGGGCTCAAGCGAATAATTTTTGCCGGATTTTTTATTCGGGGTCATGCTGACACCTTGGACACGATTGCTGTTGCCGTTCATTTCTGGTCTAAAGGTGAAGCAAAAGCAATGTTCTTAAAACACGAAGGATTTCTTGGAGCATTGGGTTCATTCATGAGCTATGAAAAGCATGGTTTTGATGACTTGAAAGTCCATCAGTCTGTGCAACAATCCCCAGCGGGTGATCGATCCACCAAACGGGGAATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

253

Amino Acids

27.82

Weight (kDa)

6.71

Isoelectric Point (pI)

25.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	311, 695
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	2 cut(s)	28, 729
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	3 cut(s)	25, 83, 253
AcuI	CTGAAG	2 cut(s)	434, 450
AfiI	CCNNNNNNNGG	1 cut(s)	744
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	465, 493, 694, 755
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	4 cut(s)	235, 381, 412, 666
AluI	AGCT	4 cut(s)	235, 381, 412, 666
AlwI	GGATC	2 cut(s)	28, 729
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	3 cut(s)	25, 83, 253
Asp700I	GAANNNNTTC	2 cut(s)	460, 636
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	38, 614, 740
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	513
BccI	CCATC	3 cut(s)	65, 158, 708
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	153
BfaI	CTAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	451
BglII	AGATCT	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	196, 214
BmrFI	CCNGG	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	20, 497
Bsa29I	ATCGAT	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse3DI	GCAATG	2 cut(s)	369, 621
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseMI	GCAATG	2 cut(s)	369, 621
BseMII	CTCAG	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	721
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	18, 531
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	2 cut(s)	56, 499
BsnI	GGCC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	492
BspDI	ATCGAT	1 cut(s)	733
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	196, 214
BspPI	GGATC	2 cut(s)	28, 729
BspTI	CTTAAG	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	369, 621
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	6 cut(s)	23, 109, 156, 483, 733, 737
BstMBI	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	733
CsiI	ACCWGGT	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	6 cut(s)	67, 101, 307, 551, 661, 677
CviJI	RGCY	7 cut(s)	17, 235, 368, 381, 412, 511, 666
CviKI_1	RGCY	7 cut(s)	17, 235, 368, 381, 412, 511, 666
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	6 cut(s)	22, 108, 155, 482, 732, 736
DpnII	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
DrdI	GACNNNNNNGTC	2 cut(s)	311, 695
DseDI	GACNNNNNNGTC	2 cut(s)	311, 695
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	434, 450
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	6 cut(s)	70, 104, 310, 554, 664, 680
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	6 cut(s)	66, 100, 306, 550, 660, 676
FauI	CCCGC	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	153
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	18, 531
Hin1II	CATG	6 cut(s)	70, 104, 310, 554, 664, 680
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	18, 531
HphI	GGTGA	3 cut(s)	38, 614, 740
Hpy166II	GTNNAC	2 cut(s)	46, 130
Hpy188I	TCNGA	2 cut(s)	400, 430
Hpy188III	TCNNGA	1 cut(s)	661
Hpy8I	GTNNAC	2 cut(s)	46, 130
HpyAV	CCTTC	2 cut(s)	409, 626
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	249, 497, 712
HpyF3I	CTNAG	1 cut(s)	500
Hsp92II	CATG	6 cut(s)	70, 104, 310, 554, 664, 680
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
LmnI	GCTCC	2 cut(s)	409, 644
LpnPI	CCDG	8 cut(s)	31, 126, 156, 183, 269, 544, 577, 735
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	6 cut(s)	22, 108, 155, 482, 732, 736
MboI	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
MboII	GAAGA	2 cut(s)	103, 443
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	6 cut(s)	25, 83, 253, 393, 522, 750
MroXI	GAANNNNTTC	2 cut(s)	460, 636
MseI	TTAA	4 cut(s)	239, 275, 452, 623
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	2 cut(s)	18, 531
MspR9I	CCNGG	1 cut(s)	171
Mva1269I	GAATGC	2 cut(s)	56, 499
MvaI	CCWGG	1 cut(s)	171
NdeII	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
NlaIII	CATG	6 cut(s)	70, 104, 310, 554, 664, 680
NlaIV	GGNNCC	2 cut(s)	196, 214
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	56, 499
PdmI	GAANNNNTTC	2 cut(s)	460, 636
PfeI	GAWTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	196, 214
PspPI	GGNCC	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	239, 275, 452, 623
Sau3AI	GATC	6 cut(s)	20, 106, 153, 480, 730, 734
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	513
SexAI	ACCWGGT	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	4 cut(s)	35, 269, 451, 512
SmoI	CTYRAG	4 cut(s)	35, 269, 451, 512
Sse9I	AATT	6 cut(s)	25, 83, 253, 393, 522, 750
SsiI	CCGC	1 cut(s)	725
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	270, 733
TaqII	GACCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	25, 83, 253, 393, 522, 750
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	4 cut(s)	239, 275, 452, 623
Tru9I	TTAA	4 cut(s)	239, 275, 452, 623
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	4 cut(s)	575, 645, 649, 684
TspRI	CASTG	1 cut(s)	504
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	3 cut(s)	25, 83, 253
XceI	RCATGY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	2 cut(s)	460, 636
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.