Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Forward (+)

32133470 .. 32137085

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34240.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTGCTTCTGCCAATGAGGAGTGTGTTATTAAGTGATAATGGTGAGAAGGCGACAGGTGGTGGAGCACACAAGTTTGCGGATCTCTTTAAAGAAAAGCTTGGGGTTTGTCTTGGCAAGGAAGATGAAATGGACAGTCTTGTGGCTGGAGCAAATTTTCTGCTTAAGTCAGTTCAAGATGAAGCATTTACGTACATGGATGGTCAGAAGGAATTTGCGCAGATTGATCAGGACGATCTATACCCCTATCTTCTGGTTAATATTGGCTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAATTTGAGCGTGTAAGCGGGACCAATGTTGGTGGTGGCACCTTTTGGGGTCTGGGAAGGCTTTTAACAAAGTGCAATAGTTTTGATGAGTTGCTGGAGTTAAGTCATCGGGGAAACAATAGAGCGATAGACATGCTTGTTGGGGACATATATGGTGGTACAGACTATAAAAAGATAGGCCTTACGTCGACTGCCATTGCGTCTAGCTTTGGCAAGGCAATATCTGATAATAAGGAGCTGGATGATTACAAACCCGAAGATATTACTCGGTCCCTTTTGAGAATGATTTCCAATAACATTGGACAGATCTCATACTTGAATGCACTAAGGTTTGGGCTCAAGCGCATATTTTTTGCGGGATTTTTCCTTCGGGGTCATGCTTACACCATGGACACGATTGCTGTTGCTGTTCATTTCTGGTCTAAAGGTGAAGCCAAAGCAATGTTTTTAAGGCACGAAGGGTTTCTTGGAGCATTGGGTGCATTCATGAGCTATGAAAAGCATGGCTTTGATAACTTGATGGTCCATCAGTTAGTGCAACAATCCCCAATCTGTGCATCCCATGGAGGAGATAAAACGCACAGTCCTGCCGACTCGGAATTGAATGACAATCCAAGCATAGATTGCAGTTTATGCTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

316

Amino Acids

34.45

Weight (kDa)

5.6

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	21 - 295	2.6e-105	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	3 cut(s)	80, 321, 659
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	154, 212, 305
AfaI	GTAC	2 cut(s)	194, 463
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	176, 622, 907
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AluBI	AGCT	4 cut(s)	100, 510, 541, 795
AluI	AGCT	4 cut(s)	100, 510, 541, 795
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	481
ApoI	RAATTY	3 cut(s)	154, 212, 305
Asp700I	GAANNNNTTC	2 cut(s)	589, 765
AspLEI	GCGC	2 cut(s)	220, 648
AspS9I	GGNCC	4 cut(s)	296, 324, 573, 826
AsuHPI	GGTGA	2 cut(s)	56, 743
AvaII	GGWCC	4 cut(s)	296, 324, 573, 826
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	4 cut(s)	194, 287, 817, 837
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	2 cut(s)	226, 282
BfaI	CTAG	1 cut(s)	507
BfrI	CTTAAG	1 cut(s)	164
BglII	AGATCT	1 cut(s)	609
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	4 cut(s)	296, 324, 573, 826
BmgT120I	GGNCC	4 cut(s)	296, 324, 573, 826
BmiI	GGNNCC	3 cut(s)	325, 343, 575
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	869
BpmI	CTGGAG	2 cut(s)	168, 419
BpuEI	CTTGAG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	690, 865
Bse3DI	GCAATG	2 cut(s)	498, 750
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	690, 865
BseGI	GGATG	3 cut(s)	205, 550, 860
BseMI	GCAATG	2 cut(s)	498, 750
BseRI	GAGGAG	2 cut(s)	34, 885
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	3 cut(s)	337, 461, 559
BsmFI	GGGAC	3 cut(s)	337, 461, 559
BsmI	GAATGC	2 cut(s)	628, 785
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	70, 642
Bsp143I	GATC	5 cut(s)	82, 226, 235, 282, 609
Bsp19I	CCATGG	2 cut(s)	690, 865
BspACI	CCGC	3 cut(s)	80, 321, 659
BspANI	GGCC	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	3 cut(s)	325, 343, 575
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	341
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	498, 750
BssECI	CCNNGG	2 cut(s)	690, 865
BssMI	GATC	5 cut(s)	82, 226, 235, 282, 609
BssT1I	CCWWGG	2 cut(s)	690, 865
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	137, 887
BstAFI	CTTAAG	1 cut(s)	164
BstAPI	GCANNNNNTGC	3 cut(s)	782, 927, 936
BstBAI	YACGTR	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	629, 945
BstDSI	CCRYGG	2 cut(s)	690, 865
BstF5I	GGATG	3 cut(s)	205, 550, 860
BstHHI	GCGC	2 cut(s)	220, 648
BstKTI	GATC	5 cut(s)	85, 229, 238, 285, 612
BstMBI	GATC	5 cut(s)	82, 226, 235, 282, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	782, 927, 936
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	298
BstSNI	TACGTA	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	82, 609
BstYI	RGATCY	2 cut(s)	82, 609
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	690, 865
BtsCI	GGATG	3 cut(s)	205, 550, 860
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	2 cut(s)	220, 648
Cfr13I	GGNCC	4 cut(s)	296, 324, 573, 826
CseI	GACGC	1 cut(s)	492
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	193, 462
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	7 cut(s)	196, 436, 680, 691, 790, 806, 866
CviQI	GTAC	2 cut(s)	193, 462
DdeI	CTNAG	2 cut(s)	629, 945
DpnI	GATC	5 cut(s)	84, 228, 237, 284, 611
DpnII	GATC	5 cut(s)	82, 226, 235, 282, 609
DraI	TTTAAA	1 cut(s)	91
Eco105I	TACGTA	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	690, 865
Eco147I	AGGCCT	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	642
Eco47I	GGWCC	4 cut(s)	296, 324, 573, 826
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	690, 865
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	2 cut(s)	690, 865
FaeI	CATG	7 cut(s)	199, 439, 683, 694, 793, 809, 869
FalI	AAGNNNNNCTT	6 cut(s)	84, 116, 753, 785, 794, 826
FaqI	GGGAC	3 cut(s)	337, 461, 559
FatI	CATG	7 cut(s)	195, 435, 679, 690, 789, 805, 865
FauI	CCCGC	2 cut(s)	314, 652
FbaI	TGATCA	2 cut(s)	226, 282
FblI	GTMKAC	1 cut(s)	491
FokI	GGATG	3 cut(s)	212, 557, 847
FriOI	GRGCYC	1 cut(s)	642
FspBI	CTAG	1 cut(s)	507
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	2 cut(s)	219, 647
GsuI	CTGGAG	2 cut(s)	168, 419
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	2 cut(s)	220, 648
Hin1II	CATG	7 cut(s)	199, 439, 683, 694, 793, 809, 869
Hin6I	GCGC	2 cut(s)	218, 646
HinP1I	GCGC	2 cut(s)	218, 646
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	896
HphI	GGTGA	2 cut(s)	56, 743
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	3 cut(s)	207, 529, 901
Hpy188III	TCNNGA	3 cut(s)	176, 230, 790
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	5 cut(s)	43, 202, 354, 680, 755
HpyCH4III	ACNGT	2 cut(s)	137, 887
HpyCH4IV	ACGT	2 cut(s)	191, 488
HpyCH4V	TGCA	6 cut(s)	378, 626, 785, 841, 860, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	782, 927, 936
HpyF3I	CTNAG	2 cut(s)	629, 945
HpySE526I	ACGT	2 cut(s)	191, 488
Hsp92II	CATG	7 cut(s)	199, 439, 683, 694, 793, 809, 869
HspAI	GCGC	2 cut(s)	218, 646
Ksp22I	TGATCA	2 cut(s)	226, 282
Kzo9I	GATC	5 cut(s)	82, 226, 235, 282, 609
LmnI	GCTCC	4 cut(s)	65, 149, 538, 773
LweI	GCATC	1 cut(s)	869
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	191, 488
MalI	GATC	5 cut(s)	84, 228, 237, 284, 611
MboI	GATC	5 cut(s)	82, 226, 235, 282, 609
MboII	GAAGA	3 cut(s)	134, 242, 572
MflI	RGATCY	2 cut(s)	82, 609
MhlI	GDGCHC	2 cut(s)	70, 642
MluCI	AATT	4 cut(s)	154, 212, 305, 902
MlyI	GAGTC	1 cut(s)	890
MnlI	CCTC	2 cut(s)	12, 863
MroXI	GAANNNNTTC	2 cut(s)	589, 765
MseI	TTAA	7 cut(s)	32, 90, 165, 258, 368, 404, 752
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	628, 785
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	782, 927, 936
NcoI	CCATGG	2 cut(s)	690, 865
NdeII	GATC	5 cut(s)	82, 226, 235, 282, 609
NlaIII	CATG	7 cut(s)	199, 439, 683, 694, 793, 809, 869
NlaIV	GGNNCC	3 cut(s)	325, 343, 575
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	483
PctI	GAATGC	2 cut(s)	628, 785
PdmI	GAANNNNTTC	2 cut(s)	589, 765
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
Ppu21I	YACGTR	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	325, 343, 575
PspPI	GGNCC	4 cut(s)	296, 324, 573, 826
PsuI	RGATCY	2 cut(s)	82, 609
RsaI	GTAC	2 cut(s)	194, 463
RsaNI	GTAC	2 cut(s)	193, 462
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	7 cut(s)	32, 90, 165, 258, 368, 404, 752
Sau3AI	GATC	5 cut(s)	82, 226, 235, 282, 609
Sau96I	GGNCC	4 cut(s)	296, 324, 573, 826
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	70, 642
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	869
SinI	GGWCC	4 cut(s)	296, 324, 573, 826
SmlI	CTYRAG	2 cut(s)	164, 641
SmoI	CTYRAG	2 cut(s)	164, 641
SnaBI	TACGTA	1 cut(s)	192
Sse9I	AATT	4 cut(s)	154, 212, 305, 902
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	80, 321, 659
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	690, 865
TaaI	ACNGT	2 cut(s)	137, 887
TaiI	ACGT	2 cut(s)	194, 491
TaqI	TCGA	1 cut(s)	491
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	4 cut(s)	154, 212, 305, 902
Tru1I	TTAA	7 cut(s)	32, 90, 165, 258, 368, 404, 752
Tru9I	TTAA	7 cut(s)	32, 90, 165, 258, 368, 404, 752
TspDTI	ATGAA	5 cut(s)	141, 195, 704, 778, 813
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	4 cut(s)	296, 324, 573, 826
XapI	RAATTY	3 cut(s)	154, 212, 305
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	589, 765
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.