Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Forward (+)

26316428 .. 26320256

Gene Structure 3829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCAGCAGACTGCAGACCAACAAGTGCACAATTTGATTCGAGGTGCAGGAAAAGCTAAAGGAGAGAGAGGCCGAGCCAAAATGGATATTGTTGAAAGCAAACAGATTTCAGAACCCATCAAATCGGAAGCTCAAATTTCCCATCTTGCTTTGGATATTGGAGGCTCTCTGATAAAGCTGGTTTATTTCTCAACAAACAGTGATTCTTCTTCTTCTTCTTCAAAGGACAGTGTAGCAGTTTCTAGTGGCAATGAAGGCCGTCCTGTTCTTGAAGGGAAGCTCCATTTTGCGAAGTTTGAAACCGCCAAGATAAATGATTGCATAGACTTCATTCGGTCCAAGCAACTTCGCCTTAGTGGCTTCCAGAAACATGGGGCTCCAGCCGGCGAGAGGTGCACTATTAAGGCCACAGGTGGTGGGGCATACAAGTACGCAGATCTCTTTAAGGAAAAGCTTGGGATTTGTCTTGACAAGGAAGATGAAATGGACTGTCTCGTGGCTGGATCAAATTTTCTGCTTAAGGCAGTTCACACCGAAGCATTCACATACATGGATGGTCAGAAGGAATTTGTGCAGATTGACCATGATGATCTATATCCCTATATGCTTGTTAATATTGGTTCTGGTGTCAGTATGATCAAGGTAGATGGACCTGGTAAGTTTGAGCGAGTAAGTGGAACCAATGTTGGTGGCGGCACCTTTTGGGGTTTGGGGAGGCTTTTAACAAAGTGCAAGAGTTTTGACGAGTTGCTGGAGTTAAGTCATCGGGGAAATAATAGGGTGATAGACATGCTTGTTGGGGACATCTATGGTGGAATGGACTATACAAAGATTGGTCTTTCATCAACAACCATTGCTTCTAGCTTTGGCAAGGCTATTTCTGATAACAAGGAACTGGAAGATTACAAACCCGAAGATATCTCTCGATCCCTCTTAAGAATGATTTCAAATAATATTGGACAGATCTCATACTTGAATGCACTGAGGTTTGGGCTCAAGCGGATATTTTTTGCTGGCTTTTTCATTCGGGGTCATGCTTACACCATGGACACGATTGCTGTTGCCGTTCATTTCTGGTCTAAAGGTGAAGCAAAAGCAATGTTCTTAAAACATGAAGGATTTCTTGGAGCTTTGGGTTCATTCATGAGCTATGAAAAGCATGGTTTTCTTAACTTGAAGGTCCACCAGTTGGTGCAACAATCTCCAGTTGATGCATCCCGTGGAGGAGATAAGATTCATGATCCACCAAACGGGGAATTGAATGAAAATCAAAGTATAGATTGCAGTATCTGCCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

434

Amino Acids

47.47

Weight (kDa)

6.9

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	695
AccB7I	CCANNNNNTGG	1 cut(s)	1189
AciI	CCGC	3 cut(s)	303, 693, 1000
AclWI	GGATC	3 cut(s)	511, 921, 1235
AcsI	RAATTY	3 cut(s)	135, 508, 566
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	390, 1189, 1250
AflII	CTTAAG	2 cut(s)	518, 934
AgsI	TTSAA	8 cut(s)	95, 222, 272, 299, 948, 976, 1177, 1261
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	1107, 1139
AluBI	AGCT	8 cut(s)	56, 131, 178, 280, 454, 864, 1130, 1149
AluI	AGCT	8 cut(s)	56, 131, 178, 280, 454, 864, 1130, 1149
Alw21I	GWGCWC	2 cut(s)	30, 398
Alw26I	GTCTC	1 cut(s)	497
Alw44I	GTGCAC	2 cut(s)	26, 394
AlwI	GGATC	3 cut(s)	511, 921, 1235
AlwNI	CAGNNNCTG	1 cut(s)	1290
AoxI	GGCC	3 cut(s)	70, 256, 405
ApaLI	GTGCAC	2 cut(s)	26, 394
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	3 cut(s)	135, 508, 566
Asp700I	GAANNNNTTC	2 cut(s)	943, 1119
AspS9I	GGNCC	3 cut(s)	336, 650, 1180
AsuHPI	GGTGA	2 cut(s)	793, 1097
AvaII	GGWCC	3 cut(s)	336, 650, 1180
BaeGI	GKGCMC	2 cut(s)	30, 398
BanI	GGYRCC	1 cut(s)	695
BanII	GRGCYC	2 cut(s)	379, 996
BauI	CACGAG	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	30, 398
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	4 cut(s)	125, 150, 548, 641
BceAI	ACGGC	2 cut(s)	243, 1049
BciT130I	CCWGG	1 cut(s)	654
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	243, 861
BfmI	CTRYAG	1 cut(s)	12
BfrI	CTTAAG	2 cut(s)	518, 934
BglI	GCCNNNNNGGC	1 cut(s)	357
BglII	AGATCT	2 cut(s)	436, 963
BisI	GCNGC	2 cut(s)	5, 694
BlsI	GCNGC	2 cut(s)	6, 695
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	3 cut(s)	336, 650, 1180
BmgT120I	GGNCC	3 cut(s)	336, 650, 1180
BmiI	GGNNCC	3 cut(s)	378, 679, 697
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	1201, 1223
BpmI	CTGGAG	3 cut(s)	363, 773, 1188
BpuEI	CTTGAG	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	1044, 1219
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 1189, 1250
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	900, 1186, 1205
Bse3DI	GCAATG	3 cut(s)	256, 852, 1104
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	1044, 1219
BseGI	GGATG	2 cut(s)	559, 1214
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	390, 1189, 1250
BseMI	GCAATG	3 cut(s)	256, 852, 1104
BseMII	CTCAG	1 cut(s)	974
BseNI	ACTGG	3 cut(s)	900, 1186, 1205
BseRI	GAGGAG	1 cut(s)	1239
BseSI	GKGCMC	2 cut(s)	30, 398
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	2 cut(s)	66, 593
BshFI	GGCC	3 cut(s)	72, 258, 407
BshNI	GGYRCC	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	30, 398
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	3 cut(s)	390, 1189, 1250
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	2 cut(s)	539, 982
BsnI	GGCC	3 cut(s)	72, 258, 407
Bsp1286I	GDGCHC	4 cut(s)	30, 379, 398, 996
Bsp143I	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
Bsp19I	CCATGG	1 cut(s)	1044
BspACI	CCGC	3 cut(s)	303, 693, 1000
BspANI	GGCC	3 cut(s)	72, 258, 407
BspCNI	CTCAG	1 cut(s)	975
BspHI	TCATGA	2 cut(s)	1143, 1237
BspLI	GGNNCC	3 cut(s)	378, 679, 697
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	3 cut(s)	511, 921, 1235
BspT107I	GGYRCC	1 cut(s)	695
BspTI	CTTAAG	2 cut(s)	518, 934
BsrDI	GCAATG	3 cut(s)	256, 852, 1104
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	900, 1186, 1205
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	1044, 1219
BssMI	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	1044
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	200, 230, 491
BstAFI	CTTAAG	2 cut(s)	518, 934
BstAPI	GCANNNNNTGC	1 cut(s)	1290
BstC8I	GCNNGC	2 cut(s)	385, 1015
BstDEI	CTNAG	2 cut(s)	353, 983
BstDSI	CCRYGG	2 cut(s)	1044, 1219
BstF5I	GGATG	2 cut(s)	559, 1214
BstKTI	GATC	7 cut(s)	439, 506, 592, 639, 929, 966, 1243
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 255, 357, 393, 1290
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	2 cut(s)	30, 398
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	436, 963
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	2 cut(s)	436, 963
BsuRI	GGCC	3 cut(s)	72, 258, 407
BtgI	CCRYGG	2 cut(s)	1044, 1219
BtsCI	GGATG	2 cut(s)	559, 1214
BtsIMutI	CAGTG	3 cut(s)	205, 235, 980
Cac8I	GCNNGC	2 cut(s)	385, 1015
CaiI	CAGNNNCTG	1 cut(s)	1290
CciI	TCATGA	2 cut(s)	1143, 1237
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	336, 650, 1180
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	353, 983
DpnI	GATC	7 cut(s)	438, 505, 591, 638, 928, 965, 1242
DpnII	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
Eco130I	CCWWGG	1 cut(s)	1044
Eco24I	GRGCYC	2 cut(s)	379, 996
Eco32I	GATATC	1 cut(s)	919
Eco47I	GGWCC	3 cut(s)	336, 650, 1180
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	919
EcoT14I	CCWWGG	1 cut(s)	1044
EcoT22I	ATGCAT	1 cut(s)	1216
EcoT38I	GRGCYC	2 cut(s)	379, 996
ErhI	CCWWGG	1 cut(s)	1044
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	1 cut(s)	815
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	2 cut(s)	5, 694
FokI	GGATG	2 cut(s)	566, 1201
FriOI	GRGCYC	2 cut(s)	379, 996
Fsp4HI	GCNGC	2 cut(s)	5, 694
FspBI	CTAG	2 cut(s)	243, 861
GluI	GCNGC	2 cut(s)	5, 694
GsuI	CTGGAG	3 cut(s)	363, 773, 1188
HaeIII	GGCC	3 cut(s)	72, 258, 407
HapII	CCGG	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	37, 203, 1234
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	793, 1097
Hpy166II	GTNNAC	4 cut(s)	28, 396, 529, 1183
Hpy188I	TCNGA	5 cut(s)	112, 127, 171, 561, 883
Hpy188III	TCNNGA	6 cut(s)	269, 364, 467, 924, 1144, 1238
Hpy8I	GTNNAC	4 cut(s)	28, 396, 529, 1183
HpyAV	CCTTC	5 cut(s)	248, 266, 556, 1109, 1171
HpyCH4III	ACNGT	3 cut(s)	200, 230, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 255, 357, 393, 1290
HpyF3I	CTNAG	2 cut(s)	353, 983
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
LmnI	GCTCC	3 cut(s)	285, 382, 1127
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	1201, 1223
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	243, 861
MalI	GATC	7 cut(s)	438, 505, 591, 638, 928, 965, 1242
MboI	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
MboII	GAAGA	8 cut(s)	198, 201, 204, 207, 210, 488, 911, 926
MflI	RGATCY	2 cut(s)	436, 963
MhlI	GDGCHC	4 cut(s)	30, 379, 398, 996
MluCI	AATT	5 cut(s)	31, 135, 508, 566, 1256
MnlI	CCTC	8 cut(s)	35, 62, 155, 384, 708, 941, 978, 1217
Mph1103I	ATGCAT	1 cut(s)	1216
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	2 cut(s)	943, 1119
MseI	TTAA	9 cut(s)	402, 444, 519, 612, 722, 758, 935, 1106, 1170
MslI	CAYNNNNRTG	1 cut(s)	548
MspCI	CTTAAG	2 cut(s)	518, 934
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	654
Mva1269I	GAATGC	2 cut(s)	539, 982
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	53, 255, 357, 393, 1290
NaeI	GCCGGC	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	1044
NdeII	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
NgoMIV	GCCGGC	1 cut(s)	383
NlaIV	GGNNCC	3 cut(s)	378, 679, 697
NmeAIII	GCCGAG	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	1 cut(s)	793
PagI	TCATGA	2 cut(s)	1143, 1237
PctI	GAATGC	2 cut(s)	539, 982
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	2 cut(s)	943, 1119
PfeI	GAWTC	3 cut(s)	37, 203, 1234
PflMI	CCANNNNNTGG	1 cut(s)	1189
PkrI	GCNGC	2 cut(s)	6, 695
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	3 cut(s)	378, 679, 697
PspPI	GGNCC	3 cut(s)	336, 650, 1180
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	1290
PsuI	RGATCY	2 cut(s)	436, 963
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	9 cut(s)	402, 444, 519, 612, 722, 758, 935, 1106, 1170
SatI	GCNGC	2 cut(s)	5, 694
Sau3AI	GATC	7 cut(s)	436, 503, 589, 636, 926, 963, 1240
Sau96I	GGNCC	3 cut(s)	336, 650, 1180
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	4 cut(s)	30, 379, 398, 996
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	1201, 1223
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	336, 650, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	3 cut(s)	518, 934, 995
SmoI	CTYRAG	3 cut(s)	518, 934, 995
Sse9I	AATT	5 cut(s)	31, 135, 508, 566, 1256
SsiI	CCGC	3 cut(s)	303, 693, 1000
SspI	AATATT	2 cut(s)	616, 955
SspMI	CTAG	2 cut(s)	243, 861
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	1 cut(s)	1044
TaaI	ACNGT	3 cut(s)	200, 230, 491
TaqI	TCGA	2 cut(s)	40, 925
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	5 cut(s)	31, 135, 508, 566, 1256
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	37, 203, 1234
Tru1I	TTAA	9 cut(s)	402, 444, 519, 612, 722, 758, 935, 1106, 1170
Tru9I	TTAA	9 cut(s)	402, 444, 519, 612, 722, 758, 935, 1106, 1170
TscAI	CASTG	3 cut(s)	205, 235, 987
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	3 cut(s)	205, 235, 987
Van91I	CCANNNNNTGG	1 cut(s)	1189
Vha464I	CTTAAG	2 cut(s)	518, 934
VneI	GTGCAC	2 cut(s)	26, 394
VpaK11BI	GGWCC	3 cut(s)	336, 650, 1180
XapI	RAATTY	3 cut(s)	135, 508, 566
XceI	RCATGY	1 cut(s)	793
XmnI	GAANNNNTTC	2 cut(s)	943, 1119
XspI	CTAG	2 cut(s)	243, 861
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.