pycom10g05850

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005783
Physical Location & Seq
Forward (+)
6500192 .. 6501363
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05850.3

Sequence Viewer

Length: 360 bp
ATGGTGAGCAGGCCACAAGTGGTGGGGCATTCAAGTACGCAGATCTTTTTAAAGAAAAGCTTGGGATTTCTCTTGACAAGGCAGATGAAATGGACTGTCTTGTGGCCGGAGCAAATTTTCTGCTTAAGGTGGGATCCTAAGACCACTTACATTCAGTCTAATCCTGTTATATTCAGTACTTACTGCAAGCATTTGTGTCTACTTACTAGTTGTACAGCTACTTTCCTCATTTTAATGGTTCAACTCGGTGGTGGTTATCATTTTGGGCTACCTTTTGGCTTTGTTGCTGATTCAATCGGAGCCACTTTAGGTGCAGGGGCTGCTTTCCTTCTCGGAAGAACTGCTGCAACTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

120

Amino Acids

13.12

Weight (kDa)

9.07

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AclWI GGATC 2 cut(s) 128, 141
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 3 cut(s) 37, 178, 214
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 33, 242, 294
AhlI ACTAGT 1 cut(s) 206
AluBI AGCT 2 cut(s) 60, 218
AluI AGCT 2 cut(s) 60, 218
AlwI GGATC 2 cut(s) 128, 141
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 2 cut(s) 11, 104
ApeKI GCWGC 2 cut(s) 320, 344
ApoI RAATTY 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 307, 331
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 124
BglII AGATCT 1 cut(s) 42
BisI GCNGC 2 cut(s) 321, 345
BlsI GCNGC 2 cut(s) 322, 346
BmcAI AGTACT 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 135, 301
BseXI GCAGC 2 cut(s) 307, 331
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 2 cut(s) 13, 106
BsiSI CCGG 1 cut(s) 107
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 2 cut(s) 13, 106
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 2 cut(s) 42, 133
BspANI GGCC 2 cut(s) 13, 106
BspLI GGNNCC 2 cut(s) 135, 301
BspPI GGATC 2 cut(s) 128, 141
BspTI CTTAAG 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 212
BssMI GATC 2 cut(s) 42, 133
Bst4CI ACNGT 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 11, 188
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 2 cut(s) 45, 136
BstMBI GATC 2 cut(s) 42, 133
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 307, 331
BstX2I RGATCY 2 cut(s) 42, 133
BstYI RGATCY 2 cut(s) 42, 133
BsuRI GGCC 2 cut(s) 13, 106
Cac8I GCNNGC 2 cut(s) 11, 188
CaiI CAGNNNCTG 1 cut(s) 320
Csp6I GTAC 3 cut(s) 36, 177, 213
CviJI RGCY 8 cut(s) 13, 60, 106, 218, 268, 279, 302, 320
CviKI_1 RGCY 8 cut(s) 13, 60, 106, 218, 268, 279, 302, 320
CviQI GTAC 3 cut(s) 36, 177, 213
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 44, 135
DpnII GATC 2 cut(s) 42, 133
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 104
FaiI YATR 1 cut(s) 170
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 321, 345
Fsp4HI GCNGC 2 cut(s) 321, 345
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 321, 345
HaeIII GGCC 2 cut(s) 13, 106
HapII CCGG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 299, 335
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 186, 314, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 42, 133
LmnI GCTCC 2 cut(s) 109, 299
LpnPI CCDG 3 cut(s) 120, 177, 300
Lsp1109I GCAGC 2 cut(s) 307, 331
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 44, 135
MboI GATC 2 cut(s) 42, 133
MboII GAAGA 1 cut(s) 348
MflI RGATCY 2 cut(s) 42, 133
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 236
MseI TTAA 3 cut(s) 50, 125, 233
MslI CAYNNNNRTG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 2 cut(s) 42, 133
NlaIV GGNNCC 2 cut(s) 135, 301
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 322, 346
PspN4I GGNNCC 2 cut(s) 135, 301
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 2 cut(s) 42, 133
RsaI GTAC 3 cut(s) 37, 178, 214
RsaNI GTAC 3 cut(s) 36, 177, 213
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 3 cut(s) 50, 125, 233
SatI GCNGC 2 cut(s) 321, 345
Sau3AI GATC 2 cut(s) 42, 133
ScaI AGTACT 1 cut(s) 178
SetI ASST 5 cut(s) 62, 131, 220, 274, 313
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 97
TasI AATT 1 cut(s) 114
TatI WGTACW 2 cut(s) 176, 212
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 3 cut(s) 50, 125, 233
Tru9I TTAA 3 cut(s) 50, 125, 233
TseI GCWGC 2 cut(s) 320, 344
TspDTI ATGAA 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 124
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.