Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0005783

Physical Location & Seq

Genomic Coordinates Reverse (-)

39974 .. 43245

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001426.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atggaggaatcatcgcaagctcaaatttcccatcttgctttggatattggaggctctttgattaagctggtctatttttcacaaaacagtgatggtggttgttcaaagagtagcgtacaagtttctaatggaaatgaaggtggtcctgttcttcaagggaagctccattttgcgaaatttgaaacggctaaaatacatgattgcatagacttcattcaatccaagcaacttcgcattactggctgccagcataatggtgcttctgccaatgagaagtgcgttattaaggccacaggtggtggggcatacaagttcgcagatctctttaaagaaaagcttgggatttgtcttggcaaagaagatgaaatggacagtcttgtagctggagcaaattttctgcttaagtcagttcatgatgaagcatttacatacatggatggtcagaaggaatttgcgcagattgatcaggaagatctatacccctatctcctggttaatattggctctggtgtcagtatgatcaaggtagatgcgcctggtaaatttgagcgtgtaagtggaacgaatgtgggtggtggcactttttggggtttaggaaggcttttaacaaagtgccagagttttgatgagttgctggagttaagtcatcggggaaataatagagtggtagacatgcttgttggggacatatatggtggcacagactataaaaagataggcctttcatcaactgccattgcttctagctttggcaaggcaatatctgataataaggagctggaagattacaaacctgaagatatttctcggtcccttttaagaatgatttcaaataacattggacagatttcatacttgaatgcactaaggtttgggctcaagcgcatattttttgcgggatttttccttcggggtcatgcttacaccatggacaccattgctgttgctgttcatttctggtctaaaggtgaagccaaagcaatgtttttaaggcacgaagggtttcttggagcattgggtgcattcatgagctatgagaagcatggctttgataacttgatggtccatcagttggtgcaacaatccccaagtgcatcccatggaggagatgagttttctgcagactcggaattgaatgacaacccaagcataaattgcagtatatacttgtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Fumble

Protein Analysis

391

Amino Acids

42.66

Weight (kDa)

5.75

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60440 AT1G60440 AT1G60440
fragaria_vesca	FvH4_4g34190 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240 FvH4_4g34240
malus_domestica	MD07G1093400.v1.1 MD13G1093600.v1.1 MD16G1094800.v1.1
prunus_persica	Prupe.1G251800_v2.0.a1
pyrus_communis	pycom02g16110 pycom10g05850 pycom13g08150 pycom14g06910 pycom16g08060
rosa_chinensis	RchiOBHm_Chr4g0443701
rosa_laevigata	RLG00000005901
rosa_multiflora	Rmu_sc0001426.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384240
rosa_samantha	Rh4AG406300 Rh4BG417300 Rh4CG431800 Rh4DG412900
rosa_wichuraiana	Rw4G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	1 cut(s)	896
AcsI	RAATTY	5 cut(s)	24, 176, 391, 449, 542
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	1072
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	7 cut(s)	105, 155, 182, 218, 831, 859, 1135
AjnI	CCWGG	2 cut(s)	489, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	990, 1022
AluBI	AGCT	8 cut(s)	20, 67, 163, 337, 383, 747, 778, 1032
AluI	AGCT	8 cut(s)	20, 67, 163, 337, 383, 747, 778, 1032
AoxI	GGCC	2 cut(s)	288, 718
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	5 cut(s)	24, 176, 391, 449, 542
Asp700I	GAANNNNTTC	2 cut(s)	826, 1002
AspLEI	GCGC	3 cut(s)	457, 535, 885
AspS9I	GGNCC	3 cut(s)	143, 810, 1063
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	3 cut(s)	143, 810, 1063
BanII	GRGCYC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	5 cut(s)	39, 86, 431, 1054, 1074
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	491, 537
BclI	TGATCA	2 cut(s)	463, 519
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	1119
BfrI	CTTAAG	1 cut(s)	401
BglII	AGATCT	2 cut(s)	319, 472
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	491, 537
Bme18I	GGWCC	3 cut(s)	143, 810, 1063
BmgT120I	GGNCC	3 cut(s)	143, 810, 1063
BmiI	GGNNCC	1 cut(s)	812
BmrFI	CCNGG	2 cut(s)	491, 537
BmsI	GCATC	2 cut(s)	520, 1103
BpmI	CTGGAG	2 cut(s)	405, 656
BpuEI	CTTGAG	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	927, 1099
Bsc4I	CCNNNNNNNGG	1 cut(s)	1072
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	3 cut(s)	735, 936, 987
BseBI	CCWGG	2 cut(s)	491, 537
BseDI	CCNNGG	2 cut(s)	927, 1099
BseGI	GGATG	2 cut(s)	442, 1094
BseLI	CCNNNNNNNGG	1 cut(s)	1072
BseMI	GCAATG	3 cut(s)	735, 936, 987
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	1119
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	290, 720
BslFI	GGGAC	2 cut(s)	698, 796
BslI	CCNNNNNNNGG	1 cut(s)	1072
BsmFI	GGGAC	2 cut(s)	698, 796
BsmI	GAATGC	2 cut(s)	865, 1022
BsnI	GGCC	2 cut(s)	290, 720
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	319, 463, 472, 519
Bsp19I	CCATGG	2 cut(s)	927, 1099
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	2 cut(s)	290, 720
BspHI	TCATGA	2 cut(s)	412, 1026
BspLI	GGNNCC	1 cut(s)	812
BspMAI	CTGCAG	1 cut(s)	1123
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	3 cut(s)	735, 936, 987
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	927, 1099
BssMI	GATC	4 cut(s)	319, 463, 472, 519
BssT1I	CCWWGG	2 cut(s)	927, 1099
Bst2UI	CCWGG	2 cut(s)	491, 537
Bst4CI	ACNGT	2 cut(s)	89, 374
BstAFI	CTTAAG	1 cut(s)	401
BstAPI	GCANNNNNTGC	2 cut(s)	1019, 1155
BstC8I	GCNNGC	2 cut(s)	18, 248
BstDEI	CTNAG	2 cut(s)	866, 1173
BstDSI	CCRYGG	2 cut(s)	927, 1099
BstF5I	GGATG	2 cut(s)	442, 1094
BstHHI	GCGC	3 cut(s)	457, 535, 885
BstKTI	GATC	4 cut(s)	322, 466, 475, 522
BstMBI	GATC	4 cut(s)	319, 463, 472, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 1019, 1155
BstNI	CCWGG	2 cut(s)	491, 537
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	489, 535
BstSFI	CTRYAG	1 cut(s)	1119
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	319, 472
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	2 cut(s)	319, 472
BsuRI	GGCC	2 cut(s)	290, 720
BtgI	CCRYGG	2 cut(s)	927, 1099
BtsCI	GGATG	2 cut(s)	442, 1094
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	18, 248
CciI	TCATGA	2 cut(s)	412, 1026
CfoI	GCGC	3 cut(s)	457, 535, 885
Cfr13I	GGNCC	3 cut(s)	143, 810, 1063
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	9 cut(s)	197, 413, 433, 673, 917, 928, 1027, 1043, 1100
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	866, 1173
DpnI	GATC	4 cut(s)	321, 465, 474, 521
DpnII	GATC	4 cut(s)	319, 463, 472, 519
DraI	TTTAAA	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	927, 1099
Eco147I	AGGCCT	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	3 cut(s)	143, 810, 1063
Eco57I	CTGAAG	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	489, 535
EcoT14I	CCWWGG	2 cut(s)	927, 1099
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	2 cut(s)	927, 1099
FaeI	CATG	9 cut(s)	200, 416, 436, 676, 920, 931, 1030, 1046, 1103
FalI	AAGNNNNNCTT	6 cut(s)	321, 353, 990, 1022, 1031, 1063
FaqI	GGGAC	2 cut(s)	698, 796
FatI	CATG	9 cut(s)	196, 412, 432, 672, 916, 927, 1026, 1042, 1099
FauI	CCCGC	1 cut(s)	889
FbaI	TGATCA	2 cut(s)	463, 519
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	449, 1081
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	744
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	3 cut(s)	456, 534, 884
GluI	GCNGC	1 cut(s)	244
GsuI	CTGGAG	2 cut(s)	405, 656
HaeIII	GGCC	2 cut(s)	290, 720
HhaI	GCGC	3 cut(s)	457, 535, 885
Hin1II	CATG	9 cut(s)	200, 416, 436, 676, 920, 931, 1030, 1046, 1103
Hin6I	GCGC	3 cut(s)	455, 533, 883
HinP1I	GCGC	3 cut(s)	455, 533, 883
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	8, 1124
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	3 cut(s)	444, 766, 1129
Hpy188III	TCNNGA	3 cut(s)	413, 467, 1027
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	5 cut(s)	131, 439, 591, 917, 992
HpyCH4III	ACNGT	2 cut(s)	89, 374
HpyCH4V	TGCA	7 cut(s)	204, 863, 1022, 1078, 1094, 1121, 1158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 1019, 1155
HpyF3I	CTNAG	2 cut(s)	866, 1173
Hsp92II	CATG	9 cut(s)	200, 416, 436, 676, 920, 931, 1030, 1046, 1103
HspAI	GCGC	3 cut(s)	455, 533, 883
Ksp22I	TGATCA	2 cut(s)	463, 519
Kzo9I	GATC	4 cut(s)	319, 463, 472, 519
LmnI	GCTCC	4 cut(s)	168, 386, 775, 1010
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	520, 1103
MaeI	CTAG	1 cut(s)	744
MalI	GATC	4 cut(s)	321, 465, 474, 521
MboI	GATC	4 cut(s)	319, 463, 472, 519
MboII	GAAGA	5 cut(s)	143, 371, 482, 794, 809
MflI	RGATCY	2 cut(s)	319, 472
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	7 cut(s)	24, 176, 391, 449, 542, 1130, 1153
MlyI	GAGTC	1 cut(s)	1118
MnlI	CCTC	2 cut(s)	44, 1097
MroXI	GAANNNNTTC	2 cut(s)	826, 1002
MseI	TTAA	9 cut(s)	63, 285, 327, 402, 495, 605, 641, 818, 989
MslI	CAYNNNNRTG	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	491, 537
Mva1269I	GAATGC	2 cut(s)	865, 1022
MvaI	CCWGG	2 cut(s)	491, 537
MwoI	GCNNNNNNNGC	3 cut(s)	240, 1019, 1155
NcoI	CCATGG	2 cut(s)	927, 1099
NdeII	GATC	4 cut(s)	319, 463, 472, 519
NlaIII	CATG	9 cut(s)	200, 416, 436, 676, 920, 931, 1030, 1046, 1103
NlaIV	GGNNCC	1 cut(s)	812
NsbI	TGCGCA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	2 cut(s)	412, 1026
PceI	AGGCCT	1 cut(s)	720
PctI	GAATGC	2 cut(s)	865, 1022
PdmI	GAANNNNTTC	2 cut(s)	826, 1002
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	1072
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	1118
PpsI	GAGTC	1 cut(s)	1118
Psp6I	CCWGG	2 cut(s)	489, 535
PspGI	CCWGG	2 cut(s)	489, 535
PspN4I	GGNNCC	1 cut(s)	812
PspPI	GGNCC	3 cut(s)	143, 810, 1063
PstI	CTGCAG	1 cut(s)	1123
PsuI	RGATCY	2 cut(s)	319, 472
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	9 cut(s)	63, 285, 327, 402, 495, 605, 641, 818, 989
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	4 cut(s)	319, 463, 472, 519
Sau96I	GGNCC	3 cut(s)	143, 810, 1063
SchI	GAGTC	1 cut(s)	1118
ScrFI	CCNGG	2 cut(s)	491, 537
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	2 cut(s)	520, 1103
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	3 cut(s)	143, 810, 1063
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	401, 878
SmoI	CTYRAG	2 cut(s)	401, 878
Sse9I	AATT	7 cut(s)	24, 176, 391, 449, 542, 1130, 1153
SseBI	AGGCCT	1 cut(s)	720
SsiI	CCGC	1 cut(s)	896
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	489, 535
StyI	CCWWGG	2 cut(s)	927, 1099
TaaI	ACNGT	2 cut(s)	89, 374
TaqII	GACCGA	1 cut(s)	798
TasI	AATT	7 cut(s)	24, 176, 391, 449, 542, 1130, 1153
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	9 cut(s)	63, 285, 327, 402, 495, 605, 641, 818, 989
Tru9I	TTAA	9 cut(s)	63, 285, 327, 402, 495, 605, 641, 818, 989
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	243
TspDTI	ATGAA	9 cut(s)	150, 202, 378, 401, 432, 714, 840, 941, 1015
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	1072
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	3 cut(s)	143, 810, 1063
XapI	RAATTY	5 cut(s)	24, 176, 391, 449, 542
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	2 cut(s)	826, 1002
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.