Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Reverse (-)

23354685 .. 23362589

Gene Structure 7905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4362 bp

ATGGAAGACGATTGTGAGGAGCTTCAGGTTCCCGTGGGAACTCTAACCTCGATAGGTTTTAGCATTTCAAACAACAATGATCGAGATAAAATGTCTGTGCTAGAGGTTGAAGCACCGAATCAGGTGACTGATTCTCGGCTAGGATTACCGAATCCGGATTCTGTCTGCAGAACCTGTGGCAGCAAAGATCGAAAAGTTTGCGAAGGGCATTTCGGGGTTATAAACTTCGCGTACTCGATAATAAACCCGTATTTCCTCAAGGAGGTAGCTGCGTTGTTAAACAAAATCTGTCCGGGGTGTAAATACATTCGAAAAAAGCAGTTTCAGATTACCGAAGACCAGCCTGAGAGATGTAGATACTGCACTTTGAATACCGGTTATCCTCTAATGAAGTTTAGGGTAACTACTAAAGAAGTCTTCAGGCGATCCGGAATCGTTGTTGAAGTAAACGAAGAGAGTCTGATGAAACTCAAGAAACGGGGAGTGTTAACATTGCCTCCTGACTATTGGAGTTTTTTGCCGCAAGACTCTAATATCGACGAGAGCTGTTTGAAACCAACAAGGCGAATAATAACGCATGCACAGGTTTATGCTCTGTTATTAGGGATTGATCAGAGGCTCATCAAGAAGGATATCCCTATGTTCAACTCTCTTGGTCTGACATCTTTTCCTGTTACACCAAATGGTTACCGTGTAACCGAAATAGTTCATCAGTTCAACGGAGCTCGGCTAATATTTGATGAACGGACTCGGATCTACAAGAAACTAGTCGGCTTTGAGGGAAACACACTTGAATTGAGTTCTCGTGTGATGGAATGCATGCAATATTCCAGACTCTTTTCGGAAACTGTGTCTTCGAGTAAAGATTCCGCAAATCCGTACCAGAAGAAGTCTGATACACCAAAACTTTGCGGTCTAAGGTTCATGAAAGACGTGCTGCTCGGTAAAAGAAGTGATCATACATTCCGGACAGTAGTTGTTGGTGATCCGTCCTTGAAGCTCAACGAGATTGGCATACCCGAGAGTATCGCAAAAAGGCTTCAAGTATCAGAGCATCTCAACCAGTGCAATAAAGAAAGGCTTGTCACTTCCTTTGTCCCCACACTGTTGGACAATAAAGAGATGCATGTGAGAAGAGGAGATAGATTGGTGGCTATTCAAGTCAATGACCTCCAAACCGGAGACAAAATATTCCGGAGTTTAATGGATGGAGACACTGTGCTGATGAACAGACCGCCTTCGATTCATCAGCATTCGCTTATTGCAATGACAGTTAGAATCCTCCCAACGACTTCTGTTGTCTCCTTGAACCCGATCTGCTGTTTGCCGTTCCGTGGTGATTTTGATGGAGATTGTCTCCACGGTTACGTTCCTCAGTCCATTCAAGCAAAGGTCGAGCTTGATGAGCTTGTTGCTTTGGATAAGCAGCTTATCAACAGACAGAATGGTCGGAACTTGCTTTCTTTAGGACAAGATAGCTTGACGGCGGCTTATCTGGTCAATGTTGAGAAGAACTGTTATCTTAATCGAGCTCAGATGCAGCAGCTTCAAATGTATTGCCCATTTCAGCTTCCTCCGCCTGCAATTATCAAAGCTTCTCCTTCGAGCACTGAGCCTCAATGGACGGGAATGCAGCTATTCGGAATGCTGTTTCCTCCCGGGTTTGACTACACTTATCCTCTGAATAATGTAGTTGTGAGTAACGGCGAGCTTTTGTCTTTCTCTGAAGGATCTGCTTGGCTCAGAGATGGAGAAGGGAATTTCATCGAGAGATTGCTCAAACACGACAAAGGGAAAGTTCTTGATATCATCTATTCCGCTCAAGAAATGCTATCTCAGTGGTTGCTGATGCGCGGTTTGAGTGTGTCCTTGGCGGATTTGTACCTTTCCTCTGATCTGCAGTCTCGAAAAAACTTGACTGAAGAGATATCATACGGGTTGCGGGAAGCTGAGCAAGTTTGCAACAAGCAACAGCTAATGGTTGAATCTTGGAGAGATTTCCTTGCAGTTAATGGGGAGGATAAGGAAGAGGATTCAGTATCGGATTTGGCCCGATTCTGCTATGAGAGACAAAAATCCGCTACATTAAGCGAACTTGCAGTCAGTGCTTTTAAGGATGCTTACAGAGATGTTCAGGCACTAGCATATAGGTATGGTGATCAATCCAACTCTTTTTTGATCATGTCGAAAGCCGGCAGCAAAGGGAATATCGGGAAGCTGGTTCAGCACAGCATGTGTATCGGTCTGCAGAATTCAGCAGTTTCTTTGTCCTTTGGGTTTCCGCGTGAACTGACTTGCGCTGCTTGGAATGACCCGAACAGTCCACTTCGTGGCGCAAAGGGAAAAGACAGTACCACTACTGAGTCATATGTTCCTTATGGAGTCATTGAGAACTCGTTTCTAACGGGTCTGAATCCATTGGAATCTTTTGTTCATTCAGTTACAAGTCGTGACAGTTCATTCAGTGGTAATGCTGATCTCCCGGGGACACTGAGCAGAAGATTAATGTTCTTCATGCGGGACATATACGCTGCTTATGATGGCACTGTGAGAAATTCTTTCGGAAACCAGTTAGTCCAGTTTACTTATGAGACTGATGGTCCCGTTGAAGATATCACAGGTGAGGCACTTGGCTCACTTTCTGCTTGTGCATTATCTGAGGCAGCTTACAGCGCGCTGGACCAGCCAATCAGCCTTCTTGAAACTTCGCCGCTTCTGAATCTTAAGAATGTATTGGAGTGTGGATCAAAGAAAGGTCAACGAGAACAGACAATGTCTTTGTATTTGTCTGAATACCTTTCAAAGAAAAAGCACGGGTTCGAATACGGGTCACTTGAGATCAAGAACCACTTGGAGAAACTTAGTTTCTCAGAGATCGTTTCAACATCTATGATAATATTCTCTCCAAGTTCTAACACGAAAGTACCGTTAAGCCCGTGGGTTTGCCATTTTCATATCTCTGAGAAAGTACTGAAGCGGAAACAACTGAGCGCAGAATCCGTTGTTTCATCTTTAAACGAGCAGTACAAGAGCAGGAACAGAGAACTGAAGCTTGATATAGTTGACTTAGATATACAAAACACAAACCACTGCTCTTCAGACGATCAGGCAATGAAGGATGATAACGTTTGCATCACGGTGACTGTAGTTGAAGCCTCAAAGCACTCGGTTTTGGAACTGGATGCTATTCGTCTCGTTTTGATCCCTTTTCTTCTTGACTCTCCTGTCAAAGGTGATCAAGGGATCAAAAAGGTGAATATTTTGTGGACTGACCGACCAAAAGCGCCAAAAAGGAATGGGAATCATTTGGCGGGTGAGCTGTACTTGAAGGTTACAATGTATGGAGATCGGGGCAAAAGAAACTGTTGGACCGCTCTTTTAGAAACCTGCCTTCCCATCATGGATATGATTGACTGGGGCCGAAGCCATCCTGATAATATCCGACAATGCTGCTCAGTTTATGGAATAGATGCTGGACGCAGCATTTTCGTAGCAAATTTGGAGTCCGCGGTGTCAGATACTGGTAAGGAGATACTAAGAGAGCATCTGCTTCTCGTAGCTGATAGTCTCTCTGTTACGGGAGAGTTTGTGGCATTAAACGCCAAAGGTTGGAGTAAACAAAGACAGGTCGAGTCCACGCCTGCACCTTTTACTCAAGCATGCTTCTCAAGCCCAAGTCAATGCTTTCTCAAAGCTGCTAAGGAAGGTGTCAGAGACGATCTTCAAGGGTCTATCGACGCTTTAGCTTGGGGAAAAGTTCCTGGTTTCGGAACTGGAGATCAGTTCGAAATCATCATTTCGCCAAAGGTTCACGGGTTTACTACACCGGTAGATGTGTATGACCTTTTGAGTAGTACAAAGACGATGCGTAGAACAAACTCTGCGCCTAAATCAGACAAAGCCACGGTCCAGCCTTTTGGCTTGCTACATTCCGCATTCCTGAAAGATATCAAGGTACTCGATGGGAAAGGGATTCCTATGTCACTGCTTAGAACGATCTTTACATGGAAAAACATCGAGTTGCTTTCCCAGTCATTGAAACGCATTCTCCACAGTTACGAGATCAATGAACTGTTGAATGAGAGGGACGAAGGACTTGTGAAGATGGTTCTGCAGTTGCACCCCAACAGTGTTGAGAAAATTGGACCAGGCGTCAAAGGAATCCGGGTCGCTAAATCGAAGCACGGAGATTCTTGTTGCTTCGAGGTTGTAAGAATAGACGGGACATTCGAAGACTTCTCATACCACAAGTGTGTCTTGGGAGCAACAAAGATAATTGCCCCAAAGAAAATGAACTTCTACAAGTCAAAGTATCTTAAAAATGGTACACTCGAGTCCGGTGGTTTCTCCGAAAACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1453

Amino Acids

162.52

Weight (kDa)

7.44

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	40 - 106	4.7e-09	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	315 - 471	7.1e-33	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	476 - 627	2.3e-22	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	697 - 754	4.6e-09	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	1022 - 1210	2.6e-06	RNA polymerase Rpb1, domain 5
DUF3223	PF11523	1333 - 1405	2e-23	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AasI	GACNNNNNNGTC	2 cut(s)	1446, 3224
Acc36I	ACCTGC	1 cut(s)	3395
AccB7I	CCANNNNNTGG	2 cut(s)	2330, 3609
AccBSI	CCGCTC	2 cut(s)	1820, 3374
AccII	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
AccIII	TCCGGA	4 cut(s)	154, 428, 966, 1194
AclI	AACGTT	1 cut(s)	3126
AclWI	GGATC	7 cut(s)	420, 761, 980, 1738, 2752, 3196, 3251
AcsI	RAATTY	4 cut(s)	1759, 2251, 2554, 3496
AcuI	CTGAAG	7 cut(s)	8, 403, 1746, 1941, 2993, 3068, 3081
AcyI	GRCGYC	1 cut(s)	4152
AdeI	CACNNNGTG	1 cut(s)	2330
AfiI	CCNNNNNNNGG	6 cut(s)	262, 1334, 2330, 3230, 3609, 3767
AflII	CTTAAG	1 cut(s)	2723
AgeI	ACCGGT	2 cut(s)	374, 3826
AhdI	GACNNNNNGTC	2 cut(s)	2598, 4151
AhlI	ACTAGT	1 cut(s)	766
AjiI	CACGTC	1 cut(s)	934
AjnI	CCWGG	2 cut(s)	3760, 4147
AleI	CACNNNNGTG	1 cut(s)	4251
Alw21I	GWGCWC	3 cut(s)	727, 1534, 1610
AlwI	GGATC	7 cut(s)	420, 761, 980, 1738, 2752, 3196, 3251
AlwNI	CAGNNNCTG	2 cut(s)	174, 3521
Ama87I	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
Aor13HI	TCCGGA	4 cut(s)	154, 428, 966, 1194
AoxI	GGCC	2 cut(s)	2049, 3418
ApoI	RAATTY	4 cut(s)	1759, 2251, 2554, 3496
AseI	ATTAAT	1 cut(s)	2504
AsiGI	ACCGGT	2 cut(s)	374, 3826
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	8 cut(s)	1854, 2300, 2336, 2675, 2677, 2993, 3286, 3886
AspS9I	GGNCC	7 cut(s)	2050, 2600, 2680, 3369, 3418, 3907, 4145
AsuC2I	CCSGG	6 cut(s)	294, 1659, 1660, 2483, 2484, 4166
AsuHPI	GGTGA	9 cut(s)	136, 995, 1349, 2168, 2633, 3151, 3245, 3265, 3326
AsuII	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
AvaI	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
AvaII	GGWCC	5 cut(s)	2600, 2680, 3369, 3907, 4145
BaeI	ACNNNNGTAYC	2 cut(s)	2907, 2940
BanII	GRGCYC	2 cut(s)	727, 1534
BarI	GAAGNNNNNNTAC	2 cut(s)	943, 975
BauI	CACGAG	1 cut(s)	804
BbsI	GAAGAC	5 cut(s)	12, 342, 409, 846, 4239
Bbv12I	GWGCWC	3 cut(s)	727, 1534, 1610
BceAI	ACGGC	3 cut(s)	1312, 1500, 1720
BcgI	CGANNNNNNTGC	8 cut(s)	180, 214, 2221, 2255, 3432, 3466, 3469, 3503
BciT130I	CCWGG	2 cut(s)	3762, 4149
BclI	TGATCA	5 cut(s)	610, 955, 2158, 2178, 3235
BcnI	CCSGG	6 cut(s)	294, 1659, 1660, 2483, 2484, 4166
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	4 cut(s)	101, 140, 767, 2141
BfmI	CTRYAG	5 cut(s)	166, 1898, 2246, 3144, 4112
BfoI	RGCGCY	1 cut(s)	3287
BfrI	CTTAAG	1 cut(s)	2723
BfuAI	ACCTGC	1 cut(s)	3395
BlpI	GCTNAGC	1 cut(s)	1950
BmcAI	AGTACT	1 cut(s)	2970
Bme1390I	CCNGG	8 cut(s)	294, 1659, 1660, 2483, 2484, 3762, 4149, 4166
Bme18I	GGWCC	5 cut(s)	2600, 2680, 3369, 3907, 4145
BmeRI	GACNNNNNGTC	2 cut(s)	2598, 4151
BmeT110I	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
BmgBI	CACGTC	1 cut(s)	934
BmgT120I	GGNCC	7 cut(s)	2050, 2600, 2680, 3369, 3418, 3907, 4145
BmiI	GGNNCC	3 cut(s)	30, 2602, 3419
BmrFI	CCNGG	8 cut(s)	294, 1659, 1660, 2483, 2484, 3762, 4149, 4166
BmrI	ACTGGG	2 cut(s)	3424, 4024
BmuI	ACTGGG	2 cut(s)	3424, 4024
BpiI	GAAGAC	5 cut(s)	12, 342, 409, 846, 4239
BplI	GAGNNNNNCTC	2 cut(s)	1341, 1373
BpmI	CTGGAG	1 cut(s)	3795
Bpu10I	CCTNAGC	1 cut(s)	3699
Bpu1102I	GCTNAGC	1 cut(s)	1950
Bpu14I	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
BpuEI	CTTGAG	6 cut(s)	242, 455, 1806, 2855, 3639, 3652
BpuMI	CCSGG	6 cut(s)	294, 1659, 1660, 2483, 2484, 4166
BsaHI	GRCGYC	1 cut(s)	4152
BsaWI	WCCGGW	8 cut(s)	154, 374, 428, 966, 1178, 1194, 3826, 4337
BsaXI	ACNNNNNCTCC	8 cut(s)	481, 511, 1203, 1233, 3573, 3603, 4032, 4062
Bsc4I	CCNNNNNNNGG	6 cut(s)	262, 1334, 2330, 3230, 3609, 3767
Bse118I	RCCGGY	3 cut(s)	374, 2192, 3826
Bse1I	ACTGG	8 cut(s)	1063, 2569, 2578, 3183, 3419, 3526, 3778, 4030
Bse3DI	GCAATG	3 cut(s)	491, 1272, 3117
BseAI	TCCGGA	4 cut(s)	154, 428, 966, 1194
BseBI	CCWGG	2 cut(s)	3762, 4149
BseGI	GGATG	5 cut(s)	1213, 2122, 3124, 3187, 3427
BseLI	CCNNNNNNNGG	6 cut(s)	262, 1334, 2330, 3230, 3609, 3767
BseMI	GCAATG	3 cut(s)	491, 1272, 3117
BseNI	ACTGG	8 cut(s)	1063, 2569, 2578, 3183, 3419, 3526, 3778, 4030
BsePI	GCGCGC	1 cut(s)	2673
BseRI	GAGGAG	2 cut(s)	32, 1152
BsgI	GTGCAG	2 cut(s)	346, 3627
Bsh1236I	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
BshFI	GGCC	2 cut(s)	2051, 3420
BshTI	ACCGGT	2 cut(s)	374, 3826
BsiHKAI	GWGCWC	3 cut(s)	727, 1534, 1610
BsiHKCI	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
BslFI	GGGAC	6 cut(s)	1082, 2500, 2534, 2586, 4100, 4237
BslI	CCNNNNNNNGG	6 cut(s)	262, 1334, 2330, 3230, 3609, 3767
BsmBI	CGTCTC	2 cut(s)	3197, 3708
BsmFI	GGGAC	6 cut(s)	1082, 2500, 2534, 2586, 4100, 4237
BsmI	GAATGC	6 cut(s)	821, 1252, 1635, 1650, 3935, 4044
BsnI	GGCC	2 cut(s)	2051, 3420
BsoBI	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
Bsp119I	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
Bsp1286I	GDGCHC	3 cut(s)	727, 1534, 1610
Bsp13I	TCCGGA	4 cut(s)	154, 428, 966, 1194
Bsp1720I	GCTNAGC	1 cut(s)	1950
BspANI	GGCC	2 cut(s)	2051, 3420
BspEI	TCCGGA	4 cut(s)	154, 428, 966, 1194
BspFNI	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	3 cut(s)	30, 2602, 3419
BspMAI	CTGCAG	4 cut(s)	170, 1902, 2250, 4116
BspMI	ACCTGC	1 cut(s)	3395
BspPI	GGATC	7 cut(s)	420, 761, 980, 1738, 2752, 3196, 3251
BspQI	GCTCTTC	1 cut(s)	3100
BspT104I	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
BspTI	CTTAAG	1 cut(s)	2723
BsrBI	CCGCTC	2 cut(s)	1820, 3374
BsrDI	GCAATG	3 cut(s)	491, 1272, 3117
BsrFI	RCCGGY	3 cut(s)	374, 2192, 3826
BsrI	ACTGG	8 cut(s)	1063, 2569, 2578, 3183, 3419, 3526, 3778, 4030
BssAI	RCCGGY	3 cut(s)	374, 2192, 3826
BssHII	GCGCGC	1 cut(s)	2673
BssNI	GRCGYC	1 cut(s)	4152
BssSI	CACGAG	1 cut(s)	804
BssT1I	CCWWGG	1 cut(s)	1869
Bst2BI	CACGAG	1 cut(s)	804
Bst2UI	CCWGG	2 cut(s)	3762, 4149
Bst6I	CTCTTC	5 cut(s)	447, 1129, 1917, 2022, 3100
BstACI	GRCGYC	1 cut(s)	4152
BstAFI	CTTAAG	1 cut(s)	2723
BstAPI	GCANNNNNTGC	1 cut(s)	2105
BstBI	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
BstC8I	GCNNGC	9 cut(s)	579, 821, 1581, 1709, 2194, 2675, 3642, 3661, 3923
BstDSI	CCRYGG	6 cut(s)	33, 1333, 1360, 2936, 3507, 3903
BstEII	GGTNACC	1 cut(s)	686
BstENI	CCTNNNNNAGG	2 cut(s)	260, 3228
BstF5I	GGATG	5 cut(s)	1213, 2122, 3124, 3187, 3427
BstFNI	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
BstH2I	RGCGCY	1 cut(s)	3287
BstHHI	GCGC	8 cut(s)	1854, 2300, 2336, 2675, 2677, 2993, 3286, 3886
BstMWI	GCNNNNNNNGC	8 cut(s)	1405, 1576, 2105, 2224, 2672, 2683, 3599, 3669
BstNI	CCWGG	2 cut(s)	3762, 4149
BstNSI	RCATGY	5 cut(s)	581, 823, 1130, 2236, 3663
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	8 cut(s)	292, 1657, 1658, 2481, 2482, 3760, 4147, 4164
BstSFI	CTRYAG	5 cut(s)	166, 1898, 2246, 3144, 4112
BstUI	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
BstV2I	GAAGAC	5 cut(s)	12, 342, 409, 846, 4239
BstX2I	RGATCY	2 cut(s)	753, 1730
BstXI	CCANNNNNNTGG	2 cut(s)	1108, 3917
BstYI	RGATCY	2 cut(s)	753, 1730
BsuRI	GGCC	2 cut(s)	2051, 3420
BtgI	CCRYGG	6 cut(s)	33, 1333, 1360, 2936, 3507, 3903
BtrI	CACGTC	1 cut(s)	934
BtsCI	GGATG	5 cut(s)	1213, 2122, 3124, 3187, 3427
BtsI	GCAGTG	2 cut(s)	3088, 3983
BveI	ACCTGC	1 cut(s)	3395
Cac8I	GCNNGC	9 cut(s)	579, 821, 1581, 1709, 2194, 2675, 3642, 3661, 3923
CaiI	CAGNNNCTG	2 cut(s)	174, 3521
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	8 cut(s)	1854, 2300, 2336, 2675, 2677, 2993, 3286, 3886
Cfr10I	RCCGGY	3 cut(s)	374, 2192, 3826
Cfr13I	GGNCC	7 cut(s)	2050, 2600, 2680, 3369, 3418, 3907, 4145
Cfr42I	CCGCGG	1 cut(s)	3510
Cfr9I	CCCGGG	2 cut(s)	1658, 2482
CseI	GACGC	3 cut(s)	3486, 3746, 4141
CspAI	ACCGGT	2 cut(s)	374, 3826
DraI	TTTAAA	1 cut(s)	3015
DraIII	CACNNNGTG	1 cut(s)	2330
DrdI	GACNNNNNNGTC	2 cut(s)	1446, 3224
DriI	GACNNNNNGTC	2 cut(s)	2598, 4151
DseDI	GACNNNNNNGTC	2 cut(s)	1446, 3224
Eam1104I	CTCTTC	5 cut(s)	447, 1129, 1917, 2022, 3100
Eam1105I	GACNNNNNGTC	2 cut(s)	2598, 4151
EarI	CTCTTC	5 cut(s)	447, 1129, 1917, 2022, 3100
EciI	GGCGGA	2 cut(s)	1566, 1889
Ecl136II	GAGCTC	2 cut(s)	725, 1532
Eco130I	CCWWGG	1 cut(s)	1869
Eco24I	GRGCYC	2 cut(s)	727, 1534
Eco32I	GATATC	5 cut(s)	634, 1807, 1929, 2614, 3949
Eco47I	GGWCC	5 cut(s)	2600, 2680, 3369, 3907, 4145
Eco53kI	GAGCTC	2 cut(s)	725, 1532
Eco57I	CTGAAG	7 cut(s)	8, 403, 1746, 1941, 2993, 3068, 3081
Eco88I	CYCGRG	4 cut(s)	1019, 1658, 2482, 4331
Eco91I	GGTNACC	1 cut(s)	686
EcoICRI	GAGCTC	2 cut(s)	725, 1532
EcoNI	CCTNNNNNAGG	2 cut(s)	260, 3228
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	2251
EcoRII	CCWGG	2 cut(s)	3760, 4147
EcoRV	GATATC	5 cut(s)	634, 1807, 1929, 2614, 3949
EcoT14I	CCWWGG	1 cut(s)	1869
EcoT22I	ATGCAT	2 cut(s)	821, 1128
EcoT38I	GRGCYC	2 cut(s)	727, 1534
ErhI	CCWWGG	1 cut(s)	1869
Esp3I	CGTCTC	2 cut(s)	3197, 3708
FalI	AAGNNNNNCTT	6 cut(s)	1065, 1097, 2834, 2866, 4241, 4273
FaqI	GGGAC	6 cut(s)	1082, 2500, 2534, 2586, 4100, 4237
FauI	CCCGC	3 cut(s)	1935, 2511, 3304
FauNDI	CATATG	1 cut(s)	2368
FbaI	TGATCA	5 cut(s)	610, 955, 2158, 2178, 3235
FokI	GGATG	5 cut(s)	1220, 2129, 3131, 3194, 3414
FriOI	GRGCYC	2 cut(s)	727, 1534
FspBI	CTAG	4 cut(s)	101, 140, 767, 2141
GlaI	GCGC	8 cut(s)	1853, 2299, 2335, 2674, 2676, 2992, 3285, 3885
GsuI	CTGGAG	1 cut(s)	3795
HaeII	RGCGCY	1 cut(s)	3287
HaeIII	GGCC	2 cut(s)	2051, 3420
HgaI	GACGC	3 cut(s)	3486, 3746, 4141
HhaI	GCGC	8 cut(s)	1854, 2300, 2336, 2675, 2677, 2993, 3286, 3886
Hin1I	GRCGYC	1 cut(s)	4152
Hin6I	GCGC	8 cut(s)	1852, 2298, 2334, 2673, 2675, 2991, 3284, 3884
HinP1I	GCGC	8 cut(s)	1852, 2298, 2334, 2673, 2675, 2991, 3284, 3884
HincII	GTYRAC	3 cut(s)	489, 2759, 3064
HindII	GTYRAC	3 cut(s)	489, 2759, 3064
HindIII	AAGCTT	2 cut(s)	1593, 3050
HpaI	GTTAAC	1 cut(s)	489
HphI	GGTGA	9 cut(s)	136, 995, 1349, 2168, 2633, 3151, 3245, 3265, 3326
Hpy99I	CGWCG	2 cut(s)	542, 3740
HpyCH4IV	ACGT	3 cut(s)	933, 1368, 3126
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1405, 1576, 2105, 2224, 2672, 2683, 3599, 3669
HpySE526I	ACGT	3 cut(s)	933, 1368, 3126
Hsp92I	GRCGYC	1 cut(s)	4152
HspAI	GCGC	8 cut(s)	1852, 2298, 2334, 2673, 2675, 2991, 3284, 3884
Kpn2I	TCCGGA	4 cut(s)	154, 428, 966, 1194
KroI	GCCGGC	1 cut(s)	2192
KroNI	GCCGGC	1 cut(s)	2194
Ksp22I	TGATCA	5 cut(s)	610, 955, 2158, 2178, 3235
KspAI	GTTAAC	1 cut(s)	489
KspI	CCGCGG	1 cut(s)	3510
LguI	GCTCTTC	1 cut(s)	3100
LmnI	GCTCC	3 cut(s)	19, 722, 4262
MaeI	CTAG	4 cut(s)	101, 140, 767, 2141
MaeII	ACGT	3 cut(s)	933, 1368, 3126
MbiI	CCGCTC	2 cut(s)	1820, 3374
MflI	RGATCY	2 cut(s)	753, 1730
MhlI	GDGCHC	3 cut(s)	727, 1534, 1610
MluCI	AATT	8 cut(s)	794, 1584, 1759, 2251, 2554, 3496, 4140, 4275
MmeI	TCCRAC	6 cut(s)	1089, 1430, 2190, 3347, 3466, 3590
Mph1103I	ATGCAT	2 cut(s)	821, 1128
MroI	TCCGGA	4 cut(s)	154, 428, 966, 1194
MroNI	GCCGGC	1 cut(s)	2192
MroXI	GAANNNNTTC	1 cut(s)	705
MslI	CAYNNNNRTG	3 cut(s)	3137, 3404, 4251
MspA1I	CMGCKG	1 cut(s)	3509
MspCI	CTTAAG	1 cut(s)	2723
MspR9I	CCNGG	8 cut(s)	294, 1659, 1660, 2483, 2484, 3762, 4149, 4166
Mva1269I	GAATGC	6 cut(s)	821, 1252, 1635, 1650, 3935, 4044
MvaI	CCWGG	2 cut(s)	3762, 4149
MvnI	CGCG	5 cut(s)	230, 1854, 2284, 2675, 3509
MwoI	GCNNNNNNNGC	8 cut(s)	1405, 1576, 2105, 2224, 2672, 2683, 3599, 3669
NaeI	GCCGGC	1 cut(s)	2194
NciI	CCSGG	6 cut(s)	294, 1659, 1660, 2483, 2484, 4166
NdeI	CATATG	1 cut(s)	2368
NgoMIV	GCCGGC	1 cut(s)	2192
NlaIV	GGNNCC	3 cut(s)	30, 2602, 3419
NmeAIII	GCCGAG	2 cut(s)	115, 706
NmuCI	GTSAC	6 cut(s)	124, 1084, 2450, 2829, 3139, 3981
NsiI	ATGCAT	2 cut(s)	821, 1128
NspI	RCATGY	5 cut(s)	581, 823, 1130, 2236, 3663
NspV	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
OliI	CACNNNNGTG	1 cut(s)	4251
PaeI	GCATGC	3 cut(s)	581, 823, 3663
PaeR7I	CTCGAG	1 cut(s)	4331
PagI	TCATGA	1 cut(s)	924
PauI	GCGCGC	1 cut(s)	2673
PciSI	GCTCTTC	1 cut(s)	3100
PcsI	WCGNNNNNNNCGW	2 cut(s)	2924, 4227
PctI	GAATGC	6 cut(s)	821, 1252, 1635, 1650, 3935, 4044
PdiI	GCCGGC	1 cut(s)	2194
PdmI	GAANNNNTTC	1 cut(s)	705
PflFI	GACNNNGTC	1 cut(s)	2773
PflMI	CCANNNNNTGG	2 cut(s)	2330, 3609
PinAI	ACCGGT	2 cut(s)	374, 3826
PshBI	ATTAAT	1 cut(s)	2504
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	727, 1534
Psp1406I	AACGTT	1 cut(s)	3126
Psp6I	CCWGG	2 cut(s)	3760, 4147
PspEI	GGTNACC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	3760, 4147
PspN4I	GGNNCC	3 cut(s)	30, 2602, 3419
PspPI	GGNCC	7 cut(s)	2050, 2600, 2680, 3369, 3418, 3907, 4145
PspXI	VCTCGAGB	1 cut(s)	4331
PsrI	GAACNNNNNNTAC	2 cut(s)	3985, 4017
PstI	CTGCAG	4 cut(s)	170, 1902, 2250, 4116
PstNI	CAGNNNCTG	2 cut(s)	174, 3521
PsuI	RGATCY	2 cut(s)	753, 1730
PsyI	GACNNNGTC	1 cut(s)	2773
PteI	GCGCGC	1 cut(s)	2673
RseI	CAYNNNNRTG	3 cut(s)	3137, 3404, 4251
SacI	GAGCTC	2 cut(s)	727, 1534
SacII	CCGCGG	1 cut(s)	3510
SapI	GCTCTTC	1 cut(s)	3100
Sau96I	GGNCC	7 cut(s)	2050, 2600, 2680, 3369, 3418, 3907, 4145
ScaI	AGTACT	1 cut(s)	2970
ScrFI	CCNGG	8 cut(s)	294, 1659, 1660, 2483, 2484, 3762, 4149, 4166
SduI	GDGCHC	3 cut(s)	727, 1534, 1610
SfcI	CTRYAG	5 cut(s)	166, 1898, 2246, 3144, 4112
Sfr274I	CTCGAG	1 cut(s)	4331
Sfr303I	CCGCGG	1 cut(s)	3510
SfuI	TTCGAA	4 cut(s)	310, 2820, 3786, 4230
SgrBI	CCGCGG	1 cut(s)	3510
SinI	GGWCC	5 cut(s)	2600, 2680, 3369, 3907, 4145
SlaI	CTCGAG	1 cut(s)	4331
SmaI	CCCGGG	2 cut(s)	1660, 2484
SmiMI	CAYNNNNRTG	3 cut(s)	3137, 3404, 4251
SmlI	CTYRAG	8 cut(s)	257, 470, 1821, 2723, 2834, 3654, 3667, 4331
SmoI	CTYRAG	8 cut(s)	257, 470, 1821, 2723, 2834, 3654, 3667, 4331
SpeI	ACTAGT	1 cut(s)	766
SphI	GCATGC	3 cut(s)	581, 823, 3663
Sse9I	AATT	8 cut(s)	794, 1584, 1759, 2251, 2554, 3496, 4140, 4275
SspI	AATATT	5 cut(s)	735, 827, 1191, 2898, 3259
SspMI	CTAG	4 cut(s)	101, 140, 767, 2141
SstI	GAGCTC	2 cut(s)	727, 1534
StyD4I	CCNGG	8 cut(s)	292, 1657, 1658, 2481, 2482, 3760, 4147, 4164
StyI	CCWWGG	1 cut(s)	1869
TaiI	ACGT	3 cut(s)	936, 1371, 3129
TaqII	GACCGA	2 cut(s)	2231, 3288
TasI	AATT	8 cut(s)	794, 1584, 1759, 2251, 2554, 3496, 4140, 4275
TatI	WGTACW	4 cut(s)	2968, 3024, 3321, 3854
TauI	GCSGC	3 cut(s)	523, 1490, 2713
TseFI	GTSAC	6 cut(s)	124, 1084, 2450, 2829, 3139, 3981
Tsp45I	GTSAC	6 cut(s)	124, 1084, 2450, 2829, 3139, 3981
TspGWI	ACGGA	7 cut(s)	735, 760, 867, 978, 1322, 2989, 4200
TspMI	CCCGGG	2 cut(s)	1658, 2482
Tth111I	GACNNNGTC	1 cut(s)	2773
Van91I	CCANNNNNTGG	2 cut(s)	2330, 3609
Vha464I	CTTAAG	1 cut(s)	2723
VpaK11BI	GGWCC	5 cut(s)	2600, 2680, 3369, 3907, 4145
VspI	ATTAAT	1 cut(s)	2504
XagI	CCTNNNNNAGG	2 cut(s)	260, 3228
XapI	RAATTY	4 cut(s)	1759, 2251, 2554, 3496
XceI	RCATGY	5 cut(s)	581, 823, 1130, 2236, 3663
XhoI	CTCGAG	1 cut(s)	4331
XmaI	CCCGGG	2 cut(s)	1658, 2482
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	4 cut(s)	101, 140, 767, 2141
ZrmI	AGTACT	1 cut(s)	2970
Zsp2I	ATGCAT	2 cut(s)	821, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.