DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020 |
| fragaria_vesca | FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 |
| malus_domestica | MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1 |
| prunus_persica | Prupe.5G089300_v2.0.a1 |
| pyrus_communis | pycom04g06250 |
| rosa_chinensis | RchiOBHm_Chr7g0199481 |
| rosa_laevigata | RLG00000003790 |
| rosa_multiflora | Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00256700 |
| rosa_rugosa | Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500 |
| rosa_samantha | Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200 |
| rosa_wichuraiana | Rw7G015760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3719 |
| Acc16I | TGCGCA | 1 cut(s) | 4070 |
| Acc36I | ACCTGC | 2 cut(s) | 493, 1458 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3430 |
| AccII | CGCG | 2 cut(s) | 681, 1859 |
| AciI | CCGC | 9 cut(s) | 464, 718, 958, 1481, 1740, 1859, 1934, 2506, 3537 |
| AclWI | GGATC | 5 cut(s) | 128, 881, 923, 971, 1267 |
| AcoI | YGGCCR | 1 cut(s) | 2653 |
| AcsI | RAATTY | 7 cut(s) | 276, 416, 605, 816, 1911, 2262, 3196 |
| AcuI | CTGAAG | 7 cut(s) | 1629, 1653, 1731, 2712, 2777, 3780, 4119 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 143, 1328, 1780, 2077, 3313, 3430, 3797 |
| AflII | CTTAAG | 2 cut(s) | 2171, 3355 |
| AgeI | ACCGGT | 1 cut(s) | 4323 |
| AjnI | CCWGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 198, 230, 2750, 2782 |
| AleI | CACNNNNGTG | 1 cut(s) | 4272 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4155, 4187 |
| Alw21I | GWGCWC | 3 cut(s) | 173, 441, 4288 |
| Alw26I | GTCTC | 8 cut(s) | 47, 1725, 1855, 2433, 2814, 3219, 3425, 3527 |
| AlwI | GGATC | 5 cut(s) | 128, 881, 923, 971, 1267 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 122, 3803 |
| Ama87I | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| AoxI | GGCC | 5 cut(s) | 327, 1190, 1226, 1482, 2653 |
| ApeKI | GCWGC | 9 cut(s) | 715, 1802, 2066, 2285, 2696, 3128, 3539, 3725, 3882 |
| ApoI | RAATTY | 7 cut(s) | 276, 416, 605, 816, 1911, 2262, 3196 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1781, 1813 |
| AseI | ATTAAT | 1 cut(s) | 1428 |
| AsiGI | ACCGGT | 1 cut(s) | 4323 |
| AspLEI | GCGC | 1 cut(s) | 4071 |
| AspS9I | GGNCC | 4 cut(s) | 327, 738, 1483, 1861 |
| AsuHPI | GGTGA | 9 cut(s) | 986, 1114, 1343, 1355, 1560, 2548, 3244, 3289, 3356 |
| AvaI | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| AvaII | GGWCC | 2 cut(s) | 738, 1861 |
| BaeGI | GKGCMC | 1 cut(s) | 2686 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3651, 3684 |
| BalI | TGGCCA | 1 cut(s) | 2655 |
| BanII | GRGCYC | 1 cut(s) | 441 |
| BauI | CACGAG | 1 cut(s) | 795 |
| BbsI | GAAGAC | 3 cut(s) | 2720, 2842, 3985 |
| Bbv12I | GWGCWC | 3 cut(s) | 173, 441, 4288 |
| BbvI | GCAGC | 9 cut(s) | 727, 1789, 2053, 2272, 2683, 3140, 3551, 3712, 3894 |
| BceAI | ACGGC | 1 cut(s) | 2354 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2090, 2124, 3796, 3830 |
| BciT130I | CCWGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| BciVI | GTATCC | 1 cut(s) | 3679 |
| BclI | TGATCA | 1 cut(s) | 1491 |
| BcoDI | GTCTC | 8 cut(s) | 47, 1725, 1855, 2433, 2814, 3219, 3425, 3527 |
| BfaI | CTAG | 2 cut(s) | 932, 3944 |
| BfmI | CTRYAG | 1 cut(s) | 3126 |
| BfrI | CTTAAG | 2 cut(s) | 2171, 3355 |
| BfuAI | ACCTGC | 2 cut(s) | 493, 1458 |
| BfuI | GTATCC | 1 cut(s) | 3679 |
| BlpI | GCTNAGC | 2 cut(s) | 864, 2796 |
| BmcAI | AGTACT | 1 cut(s) | 2629 |
| Bme1390I | CCNGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| Bme18I | GGWCC | 2 cut(s) | 738, 1861 |
| BmeT110I | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| BmgT120I | GGNCC | 4 cut(s) | 327, 738, 1483, 1861 |
| BmiI | GGNNCC | 3 cut(s) | 1448, 2555, 2863 |
| BmrFI | CCNGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| BmrI | ACTGGG | 2 cut(s) | 3887, 4289 |
| BmsI | GCATC | 9 cut(s) | 103, 505, 1066, 1104, 1369, 2020, 2080, 3174, 3490 |
| BmuI | ACTGGG | 2 cut(s) | 3887, 4289 |
| BpiI | GAAGAC | 3 cut(s) | 2720, 2842, 3985 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1837, 1869 |
| BpmI | CTGGAG | 2 cut(s) | 3293, 3407 |
| Bpu10I | CCTNAGC | 2 cut(s) | 570, 1806 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 864, 2796 |
| BpuEI | CTTGAG | 4 cut(s) | 350, 928, 1864, 3995 |
| BsaBI | GATNNNNATC | 1 cut(s) | 304 |
| BsaI | GGTCTC | 2 cut(s) | 47, 3527 |
| BsaWI | WCCGGW | 1 cut(s) | 4323 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1197, 1227, 2833, 2863 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 143, 1328, 1780, 2077, 3313, 3430, 3797 |
| Bse118I | RCCGGY | 3 cut(s) | 1188, 3608, 4323 |
| Bse1I | ACTGG | 9 cut(s) | 55, 1618, 2607, 2720, 3385, 3808, 3882, 3897, 4284 |
| Bse3DI | GCAATG | 1 cut(s) | 3639 |
| Bse8I | GATNNNNATC | 1 cut(s) | 304 |
| BseBI | CCWGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| BseJI | GATNNNNATC | 1 cut(s) | 304 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 143, 1328, 1780, 2077, 3313, 3430, 3797 |
| BseMI | GCAATG | 1 cut(s) | 3639 |
| BseNI | ACTGG | 9 cut(s) | 55, 1618, 2607, 2720, 3385, 3808, 3882, 3897, 4284 |
| BseRI | GAGGAG | 2 cut(s) | 2926, 3780 |
| BseSI | GKGCMC | 1 cut(s) | 2686 |
| BseXI | GCAGC | 9 cut(s) | 727, 1789, 2053, 2272, 2683, 3140, 3551, 3712, 3894 |
| BseYI | CCCAGC | 2 cut(s) | 1551, 3503 |
| BsgI | GTGCAG | 1 cut(s) | 2019 |
| Bsh1236I | CGCG | 2 cut(s) | 681, 1859 |
| BshFI | GGCC | 5 cut(s) | 329, 1192, 1228, 1484, 2655 |
| BshTI | ACCGGT | 1 cut(s) | 4323 |
| BsiHKAI | GWGCWC | 3 cut(s) | 173, 441, 4288 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| BsiSI | CCGG | 3 cut(s) | 1189, 3609, 4324 |
| BslFI | GGGAC | 7 cut(s) | 159, 512, 2488, 2904, 3814, 3852, 4118 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 143, 1328, 1780, 2077, 3313, 3430, 3797 |
| BsmAI | GTCTC | 8 cut(s) | 47, 1725, 1855, 2433, 2814, 3219, 3425, 3527 |
| BsmFI | GGGAC | 7 cut(s) | 159, 512, 2488, 2904, 3814, 3852, 4118 |
| BsmI | GAATGC | 5 cut(s) | 697, 3028, 3634, 3913, 4216 |
| BsnI | GGCC | 5 cut(s) | 329, 1192, 1228, 1484, 2655 |
| Bso31I | GGTCTC | 2 cut(s) | 47, 3527 |
| BsoBI | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| Bsp1286I | GDGCHC | 4 cut(s) | 173, 441, 2686, 4288 |
| Bsp1407I | TGTACA | 2 cut(s) | 2514, 3682 |
| Bsp143I | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 864, 2796 |
| Bsp19I | CCATGG | 1 cut(s) | 2969 |
| BspACI | CCGC | 9 cut(s) | 464, 718, 958, 1481, 1740, 1859, 1934, 2506, 3537 |
| BspANI | GGCC | 5 cut(s) | 329, 1192, 1228, 1484, 2655 |
| BspFNI | CGCG | 2 cut(s) | 681, 1859 |
| BspHI | TCATGA | 3 cut(s) | 2047, 2086, 2922 |
| BspLI | GGNNCC | 3 cut(s) | 1448, 2555, 2863 |
| BspMAI | CTGCAG | 1 cut(s) | 3130 |
| BspMI | ACCTGC | 2 cut(s) | 493, 1458 |
| BspPI | GGATC | 5 cut(s) | 128, 881, 923, 971, 1267 |
| BspTI | CTTAAG | 2 cut(s) | 2171, 3355 |
| BspTNI | GGTCTC | 2 cut(s) | 47, 3527 |
| BsrDI | GCAATG | 1 cut(s) | 3639 |
| BsrFI | RCCGGY | 3 cut(s) | 1188, 3608, 4323 |
| BsrGI | TGTACA | 2 cut(s) | 2514, 3682 |
| BsrI | ACTGG | 9 cut(s) | 55, 1618, 2607, 2720, 3385, 3808, 3882, 3897, 4284 |
| BssAI | RCCGGY | 3 cut(s) | 1188, 3608, 4323 |
| BssMI | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| BssSI | CACGAG | 1 cut(s) | 795 |
| BssT1I | CCWWGG | 4 cut(s) | 330, 2224, 2969, 3729 |
| Bst2BI | CACGAG | 1 cut(s) | 795 |
| Bst2UI | CCWGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| Bst6I | CTCTTC | 1 cut(s) | 1998 |
| BstAFI | CTTAAG | 2 cut(s) | 2171, 3355 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 461, 2705 |
| BstAUI | TGTACA | 2 cut(s) | 2514, 3682 |
| BstC8I | GCNNGC | 3 cut(s) | 1634, 2308, 3712 |
| BstDSI | CCRYGG | 2 cut(s) | 2370, 2969 |
| BstEII | GGTNACC | 1 cut(s) | 2974 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2075, 3795 |
| BstFNI | CGCG | 2 cut(s) | 681, 1859 |
| BstHHI | GCGC | 1 cut(s) | 4071 |
| BstKTI | GATC | 8 cut(s) | 136, 889, 918, 979, 1275, 1494, 2467, 2716 |
| BstMAI | GTCTC | 8 cut(s) | 47, 1725, 1855, 2433, 2814, 3219, 3425, 3527 |
| BstMBI | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 335, 461, 1092, 1399, 1940, 2167, 2705, 4066 |
| BstNI | CCWGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| BstNSI | RCATGY | 5 cut(s) | 1121, 1636, 2310, 2621, 3141 |
| BstPI | GGTNACC | 1 cut(s) | 2974 |
| BstSCI | CCNGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| BstSFI | CTRYAG | 1 cut(s) | 3126 |
| BstSLI | GKGCMC | 1 cut(s) | 2686 |
| BstUI | CGCG | 2 cut(s) | 681, 1859 |
| BstV1I | GCAGC | 9 cut(s) | 727, 1789, 2053, 2272, 2683, 3140, 3551, 3712, 3894 |
| BstV2I | GAAGAC | 3 cut(s) | 2720, 2842, 3985 |
| BstX2I | RGATCY | 1 cut(s) | 1272 |
| BstYI | RGATCY | 1 cut(s) | 1272 |
| BsuI | GTATCC | 1 cut(s) | 3679 |
| BsuRI | GGCC | 5 cut(s) | 329, 1192, 1228, 1484, 2655 |
| BtgI | CCRYGG | 2 cut(s) | 2370, 2969 |
| BtgZI | GCGATG | 1 cut(s) | 662 |
| BtsI | GCAGTG | 2 cut(s) | 2517, 2744 |
| BveI | ACCTGC | 2 cut(s) | 493, 1458 |
| Cac8I | GCNNGC | 3 cut(s) | 1634, 2308, 3712 |
| CaiI | CAGNNNCTG | 2 cut(s) | 122, 3803 |
| CciI | TCATGA | 3 cut(s) | 2047, 2086, 2922 |
| CfoI | GCGC | 1 cut(s) | 4071 |
| Cfr10I | RCCGGY | 3 cut(s) | 1188, 3608, 4323 |
| Cfr13I | GGNCC | 4 cut(s) | 327, 738, 1483, 1861 |
| CseI | GACGC | 1 cut(s) | 3979 |
| CspAI | ACCGGT | 1 cut(s) | 4323 |
| DpnI | GATC | 8 cut(s) | 135, 888, 917, 978, 1274, 1493, 2466, 2715 |
| DpnII | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| DraI | TTTAAA | 3 cut(s) | 282, 445, 1954 |
| EaeI | YGGCCR | 1 cut(s) | 2653 |
| Eam1104I | CTCTTC | 1 cut(s) | 1998 |
| EarI | CTCTTC | 1 cut(s) | 1998 |
| Ecl136II | GAGCTC | 1 cut(s) | 439 |
| Eco130I | CCWWGG | 4 cut(s) | 330, 2224, 2969, 3729 |
| Eco147I | AGGCCT | 1 cut(s) | 1228 |
| Eco24I | GRGCYC | 1 cut(s) | 441 |
| Eco31I | GGTCTC | 2 cut(s) | 47, 3527 |
| Eco32I | GATATC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 2 cut(s) | 738, 1861 |
| Eco53kI | GAGCTC | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 7 cut(s) | 1629, 1653, 1731, 2712, 2777, 3780, 4119 |
| Eco88I | CYCGRG | 3 cut(s) | 3222, 4289, 4349 |
| Eco91I | GGTNACC | 1 cut(s) | 2974 |
| EcoICRI | GAGCTC | 1 cut(s) | 439 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2075, 3795 |
| EcoO65I | GGTNACC | 1 cut(s) | 2974 |
| EcoRI | GAATTC | 1 cut(s) | 2262 |
| EcoRII | CCWGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| EcoRV | GATATC | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 4 cut(s) | 330, 2224, 2969, 3729 |
| EcoT22I | ATGCAT | 4 cut(s) | 699, 1119, 2548, 3913 |
| EcoT38I | GRGCYC | 1 cut(s) | 441 |
| ErhI | CCWWGG | 4 cut(s) | 330, 2224, 2969, 3729 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2750, 2782, 4100, 4132 |
| FaqI | GGGAC | 7 cut(s) | 159, 512, 2488, 2904, 3814, 3852, 4118 |
| FauI | CCCGC | 1 cut(s) | 2499 |
| FauNDI | CATATG | 2 cut(s) | 2548, 3490 |
| FbaI | TGATCA | 1 cut(s) | 1491 |
| FriOI | GRGCYC | 1 cut(s) | 441 |
| FspBI | CTAG | 2 cut(s) | 932, 3944 |
| FspI | TGCGCA | 1 cut(s) | 4070 |
| GlaI | GCGC | 1 cut(s) | 4070 |
| GsaI | CCCAGC | 2 cut(s) | 1555, 3507 |
| GsuI | CTGGAG | 2 cut(s) | 3293, 3407 |
| HaeIII | GGCC | 5 cut(s) | 329, 1192, 1228, 1484, 2655 |
| HapII | CCGG | 3 cut(s) | 1189, 3609, 4324 |
| HgaI | GACGC | 1 cut(s) | 3979 |
| HhaI | GCGC | 1 cut(s) | 4071 |
| Hin6I | GCGC | 1 cut(s) | 4069 |
| HinP1I | GCGC | 1 cut(s) | 4069 |
| HincII | GTYRAC | 1 cut(s) | 3040 |
| HindII | GTYRAC | 1 cut(s) | 3040 |
| HindIII | AAGCTT | 3 cut(s) | 755, 2828, 3927 |
| HpaII | CCGG | 3 cut(s) | 1189, 3609, 4324 |
| HphI | GGTGA | 9 cut(s) | 986, 1114, 1343, 1355, 1560, 2548, 3244, 3289, 3356 |
| Hpy166II | GTNNAC | 5 cut(s) | 2517, 3040, 3347, 4044, 4277 |
| Hpy8I | GTNNAC | 5 cut(s) | 2517, 3040, 3347, 4044, 4277 |
| HpyCH4IV | ACGT | 3 cut(s) | 3468, 3920, 4216 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 335, 461, 1092, 1399, 1940, 2167, 2705, 4066 |
| HpySE526I | ACGT | 3 cut(s) | 3468, 3920, 4216 |
| HspAI | GCGC | 1 cut(s) | 4069 |
| Ksp22I | TGATCA | 1 cut(s) | 1491 |
| Kzo9I | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| LmnI | GCTCC | 4 cut(s) | 1641, 1696, 2861, 4306 |
| Lsp1109I | GCAGC | 9 cut(s) | 727, 1789, 2053, 2272, 2683, 3140, 3551, 3712, 3894 |
| LweI | GCATC | 9 cut(s) | 103, 505, 1066, 1104, 1369, 2020, 2080, 3174, 3490 |
| MaeI | CTAG | 2 cut(s) | 932, 3944 |
| MaeII | ACGT | 3 cut(s) | 3468, 3920, 4216 |
| MalI | GATC | 8 cut(s) | 135, 888, 917, 978, 1274, 1493, 2466, 2715 |
| MboI | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| MfeI | CAATTG | 1 cut(s) | 1421 |
| MflI | RGATCY | 1 cut(s) | 1272 |
| MhlI | GDGCHC | 4 cut(s) | 173, 441, 2686, 4288 |
| MlsI | TGGCCA | 1 cut(s) | 2655 |
| MluNI | TGGCCA | 1 cut(s) | 2655 |
| MlyI | GAGTC | 6 cut(s) | 1874, 2360, 2476, 3035, 3834, 4039 |
| MmeI | TCCRAC | 3 cut(s) | 1053, 1518, 2928 |
| Mox20I | TGGCCA | 1 cut(s) | 2655 |
| Mph1103I | ATGCAT | 4 cut(s) | 699, 1119, 2548, 3913 |
| MscI | TGGCCA | 1 cut(s) | 2655 |
| MslI | CAYNNNNRTG | 6 cut(s) | 63, 2136, 3759, 3775, 4209, 4272 |
| Msp20I | TGGCCA | 1 cut(s) | 2655 |
| MspA1I | CMGCKG | 2 cut(s) | 718, 3211 |
| MspCI | CTTAAG | 2 cut(s) | 2171, 3355 |
| MspI | CCGG | 3 cut(s) | 1189, 3609, 4324 |
| MspR9I | CCNGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| MunI | CAATTG | 1 cut(s) | 1421 |
| Mva1269I | GAATGC | 5 cut(s) | 697, 3028, 3634, 3913, 4216 |
| MvaI | CCWGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| MvnI | CGCG | 2 cut(s) | 681, 1859 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 335, 461, 1092, 1399, 1940, 2167, 2705, 4066 |
| NcoI | CCATGG | 1 cut(s) | 2969 |
| NdeI | CATATG | 2 cut(s) | 2548, 3490 |
| NdeII | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| NlaIV | GGNNCC | 3 cut(s) | 1448, 2555, 2863 |
| NmuCI | GTSAC | 6 cut(s) | 118, 127, 682, 944, 3172, 3447 |
| NsbI | TGCGCA | 1 cut(s) | 4070 |
| NsiI | ATGCAT | 4 cut(s) | 699, 1119, 2548, 3913 |
| NspI | RCATGY | 5 cut(s) | 1121, 1636, 2310, 2621, 3141 |
| OliI | CACNNNNGTG | 1 cut(s) | 4272 |
| PaeI | GCATGC | 2 cut(s) | 1636, 2310 |
| PaeR7I | CTCGAG | 2 cut(s) | 3222, 4289 |
| PagI | TCATGA | 3 cut(s) | 2047, 2086, 2922 |
| PasI | CCCWGGG | 1 cut(s) | 3312 |
| PceI | AGGCCT | 1 cut(s) | 1228 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3150 |
| PctI | GAATGC | 5 cut(s) | 697, 3028, 3634, 3913, 4216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3430 |
| PfoI | TCCNGGA | 1 cut(s) | 3270 |
| PinAI | ACCGGT | 1 cut(s) | 4323 |
| PleI | GAGTC | 6 cut(s) | 1874, 2359, 2476, 3035, 3834, 4039 |
| PpsI | GAGTC | 6 cut(s) | 1874, 2359, 2476, 3035, 3834, 4039 |
| PshBI | ATTAAT | 1 cut(s) | 1428 |
| PsiI | TTATAA | 1 cut(s) | 3719 |
| Psp124BI | GAGCTC | 1 cut(s) | 441 |
| Psp6I | CCWGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| PspEI | GGTNACC | 1 cut(s) | 2974 |
| PspFI | CCCAGC | 2 cut(s) | 1551, 3503 |
| PspGI | CCWGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| PspN4I | GGNNCC | 3 cut(s) | 1448, 2555, 2863 |
| PspPI | GGNCC | 4 cut(s) | 327, 738, 1483, 1861 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 376, 408 |
| PstI | CTGCAG | 1 cut(s) | 3130 |
| PstNI | CAGNNNCTG | 2 cut(s) | 122, 3803 |
| PsuI | RGATCY | 1 cut(s) | 1272 |
| PvuII | CAGCTG | 1 cut(s) | 3211 |
| RseI | CAYNNNNRTG | 6 cut(s) | 63, 2136, 3759, 3775, 4209, 4272 |
| SacI | GAGCTC | 1 cut(s) | 441 |
| Sau3AI | GATC | 8 cut(s) | 133, 886, 915, 976, 1272, 1491, 2464, 2713 |
| Sau96I | GGNCC | 4 cut(s) | 327, 738, 1483, 1861 |
| ScaI | AGTACT | 1 cut(s) | 2629 |
| SchI | GAGTC | 6 cut(s) | 1874, 2360, 2476, 3035, 3834, 4039 |
| ScrFI | CCNGG | 7 cut(s) | 297, 742, 1775, 2472, 3272, 3313, 3705 |
| SduI | GDGCHC | 4 cut(s) | 173, 441, 2686, 4288 |
| SfaNI | GCATC | 9 cut(s) | 103, 505, 1066, 1104, 1369, 2020, 2080, 3174, 3490 |
| SfcI | CTRYAG | 1 cut(s) | 3126 |
| Sfr274I | CTCGAG | 2 cut(s) | 3222, 4289 |
| SinI | GGWCC | 2 cut(s) | 738, 1861 |
| SlaI | CTCGAG | 2 cut(s) | 3222, 4289 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 63, 2136, 3759, 3775, 4209, 4272 |
| SmlI | CTYRAG | 8 cut(s) | 365, 907, 1843, 2171, 3222, 3355, 3974, 4289 |
| SmoI | CTYRAG | 8 cut(s) | 365, 907, 1843, 2171, 3222, 3355, 3974, 4289 |
| SphI | GCATGC | 2 cut(s) | 1636, 2310 |
| SseBI | AGGCCT | 1 cut(s) | 1228 |
| SsiI | CCGC | 9 cut(s) | 464, 718, 958, 1481, 1740, 1859, 1934, 2506, 3537 |
| SspI | AATATT | 4 cut(s) | 380, 480, 877, 3515 |
| SspMI | CTAG | 2 cut(s) | 932, 3944 |
| SstI | GAGCTC | 1 cut(s) | 441 |
| StuI | AGGCCT | 1 cut(s) | 1228 |
| StyD4I | CCNGG | 7 cut(s) | 295, 740, 1773, 2470, 3270, 3311, 3703 |
| StyI | CCWWGG | 4 cut(s) | 330, 2224, 2969, 3729 |
| TaiI | ACGT | 3 cut(s) | 3471, 3923, 4219 |
| TatI | WGTACW | 5 cut(s) | 1558, 2514, 2627, 3682, 4276 |
| TauI | GCSGC | 2 cut(s) | 1484, 1743 |
| TseFI | GTSAC | 6 cut(s) | 118, 127, 682, 944, 3172, 3447 |
| TseI | GCWGC | 9 cut(s) | 715, 1802, 2066, 2285, 2696, 3128, 3539, 3725, 3882 |
| Tsp45I | GTSAC | 6 cut(s) | 118, 127, 682, 944, 3172, 3447 |
| TspGWI | ACGGA | 6 cut(s) | 751, 2394, 2416, 2854, 3022, 3159 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3430 |
| Vha464I | CTTAAG | 2 cut(s) | 2171, 3355 |
| VpaK11BI | GGWCC | 2 cut(s) | 738, 1861 |
| VspI | ATTAAT | 1 cut(s) | 1428 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2075, 3795 |
| XapI | RAATTY | 7 cut(s) | 276, 416, 605, 816, 1911, 2262, 3196 |
| XceI | RCATGY | 5 cut(s) | 1121, 1636, 2310, 2621, 3141 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1610 |
| XhoI | CTCGAG | 2 cut(s) | 3222, 4289 |
| XspI | CTAG | 2 cut(s) | 932, 3944 |
| ZrmI | AGTACT | 1 cut(s) | 2629 |
| Zsp2I | ATGCAT | 4 cut(s) | 699, 1119, 2548, 3913 |